TCONS_00010208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010208
Unique NameTCONS_00010208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010208 ID=TCONS_00010208|Name=TCONS_00010208|organism=Clytia hemisphaerica|type=transcript|length=1212bp
TTCACCATCCTGCATCCATTTCCTCATCGCCATCTACCCCAACCACCAAA
TCCAAAACGAAGAAACCAATGGCAATGAGAAAGAAAGTTGATAAAGCTCG
GTCTTTTGTTGATTCTTCTGATGAATATCAATCTGAAGATCAAGATTCAT
CAGCACCTTTGTTTTCGCCAAAAACATCAACTCCATCGCAAAATGTGAAC
AAAGAGCTGAAGGACGCCAAAACAGAAATAGATAATTTGAAGCAGTTGTG
TTCGAAAATGCAAGAACAATTAGAAGACCTGCAAGCAAAGTCATCAAAAG
GAGGAAGAAAGAGGAAATTAGAGGCTTCTATTAAAGCTAAGAGACGTGTT
CGTAAAAGTGTTGGTGACTCAATGGATGTTGATGGGTATTGTTGGGACTT
ATCCAATGGTAAAGGcCCTTTTTCTGGTGACAATAAGAAGCTATCTGGGC
ATGCTATCGAAAAGGTTCTTGGACTTTACCCTGAAATGGACAAAGTAGAG
ATTGAAAATGCTATTCGTATTAACTTTCGTTCACGAAAAGACAACAAGCG
CAAACTAGAAAACAATCCTAATTACCGCGCAGATTCATCCAAAAACAGCA
GAAAAGACACTAAACTGAACAATCGCTTGAAGGCATTAAAGCATCTGAAT
GTAGATGATGAAACAAGGAGTGCCATTTCTGGTATTCTTGTTCGTCCACT
TATGTCCTCGGATGATGAAGAAATAGACGGAAACAAGAAGACATTTATTG
TTCGTAAACCATGTTGGAGGACCGAAGGTGTAACCAATTGCTTCCATACT
CTTGATGAGGCACGTCAGAGTAATCTGTCCAAACATTCTCTTTTCCGTCT
CATGGATAGAAAAGATGGTCCACCCTCTGATAGGGAAGAACCGAAATGGT
CGGAGGAGATGGTGAAAGccatcaaattttttgattgaataataGTCCAA
ATGTTCCAGTCAGAATAGCATGAAAAACTAatatagaaaatatttgaaat
ctaGGAATACGAGGAAAATGAGGCTTATGACGTCATGACAATAATATTTG
GAATTTAGCTATCTTAAATTCATtcttatcagtttttcatgccctttcaa
ctggtatatttttttaattttgagctTAAATATTTATTCTATCTATAATA
CCTGGTCATGGCATTTTGTCACCTAAATTTTGCAACATAATATTAATCTT
TAAcaaaaattg
Run BLAST on NCBI

protein sequence of TCONS_00010208-protein

>TCONS_00010208-protein ID=TCONS_00010208-protein|Name=TCONS_00010208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
HHPASISSSPSTPTTKSKTKKPMAMRKKVDKARSFVDSSDEYQSEDQDSS
APLFSPKTSTPSQNVNKELKDAKTEIDNLKQLCSKMQEQLEDLQAKSSKG
GRKRKLEASIKAKRRVRKSVGDSMDVDGYCWDLSNGKGPFSGDNKKLSGH
AIEKVLGLYPEMDKVEIENAIRINFRSRKDNKRKLENNPNYRADSSKNSR
KDTKLNNRLKALKHLNVDDETRSAISGILVRPLMSSDDEEIDGNKKTFIV
RKPCWRTEGVTNCFHTLDEARQSNLSKHSLFRLMDRKDGPPSDREEPKWS
EEMVKAIKFFD
Run BLAST on NCBI

transcript from alignment at sc0000103:338827..342166-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010208 ID=TCONS_00010208|Name=TCONS_00010208|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at sc0000103:338827..342166- (Clytia hemisphaerica)
TTCACCATCCTGCATCCATTTCCTCATCGCCATCTACCCCAACCACCAAA
TCCAAAACGAAGAAACCAATGGCAATGAGAAAGAAAGTTGATAAAGCTCG
GTCTTTTGTTGATTCTTCTGATGAATATCAATCTGAAGATCAAGATTCAT
CAGCACCTTTGTTTTCGCCAAAAACATCAACTCCATCGCAAAATGTGAAC
AAAGAGCTGAAGGACGCCAAAACAGGTACGTCAGAATGCTTTTATTTTTC
CTTATTTTCTATGAAATACTATCTTAATCTGCATTCTGTGTTCTGACATT
TTGTTTTATTAACAGTGGACTGAAGCACTTAAATTTTTGAAGATTAGAAA
CAATGTGCTAAAAACACTTTTGAAAACTACCTTGATTTTGACAGTAGTCG
TAGTGATAAATGTATTCCATTATTAATGCATTAACATAGTAATGAACAAC
TTCTTAGGGGTCTGATCCTTGATTTAAAGGGGTTTGGAGAGCATTATTTA
AAAATTTTATCTGGGTTGTTTTAAGGGTCCTGGAATGCTCCTCACAAGAG
GTTTGGGGTCACTGGGAAGCTAAATTTATTTTGATATTTGTGTTTTCAGA
AATAGATAATTTGAAGCAGTTGTGTTCGAAAATGCAAGAACAATTAGAAG
ACCTGCAAGCAAAGTCATCAAAAGGAGGAAGAAAGAGGAAATTAGAGGCT
TCTATTAAAGCTAAGGTTAGAAAGGATCTAGACTATTCAAATATTCATAA
TCAAACATTAGCATTACAGAGAATCAAGATAGTCAGACTTCAAGAGAATT
ATTAAATTATTATTATTTTTAAAAATGAGTTAACTTTAGAACTATGAGTA
AAATATAGTTACTAGTACAATTGATTGACAATTAGGTTGTTATTTTTCTT
GAGGAAATATCTAATGTTCTTGCTGTTATAAACATAGAAAATATTTAAGA
AAGGTTTATAAAAGATTTTCTTTTATCTAGAGACGTGTTCGTAAAAGTGT
TGGTGACTCAATGGATGTTGATGGGTATTGTTGGGACTTATCCAATGGTA
AAGGGTGAGTGAAAGTCTTATACTCATTTTTTTAAGAGATATATACAAGT
TTTGATGGACACTATGATAAGTTCTTCTTATTTAAGGCTTTGCAGGCTCT
TAGAACACTCAATTTCTTAGGAAAGACAAAAATACTCACAAAATTGTGTT
CACATTAAGAAAATTTTCTGTCTTATAACCATAAGGCCTGAAAAGTTTTT
GAAATGTTACTTTTAATAATCTTTGACCAAGGTAAATAAATAACCTTGTT
TTGCCTTTTTTATTTCATTTCAGTTCAAATATGTCATTTTAGAGACATAA
ACATAGGTCTAAGTTAGTTTTGACACTGAAAAAATACTTTTGTCATAATA
GGACTTAGCTTTTTCGTCATGCCTTACATCTGATTGTTTCAAATTAATGC
CTCTCCTAGTGGGGTGTTTACTTGAGCAGGCATTAAAAAGAAGGGGCGTT
TGTTACAGGCAATACAGTACTTAAAAATTACAACCCAATTCTGTTGTTGT
GGGCTAATTTAAATTATTGTTGTTGTTTCCCTACAATCACTTGAAACGTG
GGCCTATGCTGGAGTTAAAATATTTAAATATATACAATATATTTAATTTA
TTTTCAGCCCTTTTTCTGGTGACAATAAGAAGCTATCTGGGCATGCTATC
GAAAAGGTTCTTGGACTTTACCCTGAAATGGACAAAGTAGAGATTGAAAG
TAAGTTCAGGTCCTAAATCCTTACATATTTTTACTTTTGTGTAGCAGATG
TTTATATTCTGTTTTCATTTGCCCTTTTTATACTGATTTCGATGAGCTTT
AGAATTTTTGCAAGCTCTCATTACTTGACCTCGGGTAATATTTCTCTATA
CAGCCCTCACTATTACTGTATTAGGAGGACCTTTATCCATGATAGATAAT
TTTAATAAATATTATATAAAAGGTAAAACAAATATGAGTTATATCAATTA
AAAAAAATTGCTTATATTTTAGATGCTATTCGTATTAACTTTCGTTCACG
AAAAGACAACAAGCGCAAACTAGAAAACAATCCTAATTACCGCGCAGATT
CATCCAAAAACAGCAGAAAAGACACTGTAAGTAATATAATCTTTATTTGA
ATCCAAATACTATTAGGACACATCTTTTGCAAGAACTGACTTACTGAAAA
ACTAAATTCTTCAAAGAAAATTTACCATAGAACTTTTTTTGGTGGGAACT
AATTTTGACGAATGGCAAAAATCGAAAAATCCTGAAAATTTTTTATTTTG
GCGAGAACTAATTTTGGGAAATGACAGCGTAAATTTATCTTGCCTCATTT
AAAGCTTTTTTGTGAACTCAAGATATATTTAGGCAACATACCAAAAAATT
TAATTGTTTCACTTTGCTGAATTTTGTCTAAATTTGTTGAATTCAACAAA
ATTAGTTCCCGCCAGAATTCTAAAATGTTTTCAAGCAAGTAGCATTATAT
TCAAGGGGGGATGCTCGATTTTTGACATTATTCAGTTAGAATTGTCAAGC
AGATAGTTTGAAGGAAGTGACCCTAGAAATTTAGACCTCATGTATAGTTA
GCAACAAAATGCCTTCATCTGACAAAATACAGCAGATATTCCTATGAACT
GCTCGTCGGACGCTTCTCTATATTGAATGTTTGAGTCATTATAAATCCTG
ATTGACGACTTTCTTTAATTGTTTCTTTAATATTTTTAGAAACTGAACAA
TCGCTTGAAGGCATTAAAGCATCTGAATGTAGATGATGAAACAAGGAGTG
CCATTTCTGGTATTCTTGTTCGTCCACTTATGTCCTCGGATGATGAAGAA
ATAGACGGAAACAAGAAGACATTTATTGTTCGTAAACCATGTTGGAGGAC
CGAAGGTGTAACCAATTGCTTCCATACTCTTGATGAGGCACGTCAGAGTA
ATCTGTCCAAACATTCTCTTTTCCGTCTCATGGATAGAAAAGATGGTCCA
CCCTCTGATAGGGAAGAACCGAAATGGTCGGAGGAGATGGTGAAAGCCAT
CAAATTTTTTGATTGAATAATAGTCCAAATGTTCCAGTCAGAATAGCATG
AAAAACTAATATAGAAAATATTTGAAATCTAGGAATACGAGGAAAATGAG
GCTTATGACGTCATGACAATAATATTTGGAATTTAGCTATCTTAAATTCA
TTCTTATCAGTTTTTCATGCCCTTTCAACTGGTATATTTTTTTAATTTTG
AGCTTAAATATTTATTCTATCTATAATACCTGGTCATGGCATTTTGTCAC
CTAAATTTTGCAACATAATATTAATCTTTAACAAAAATTG

Coding sequence (CDS) from alignment at sc0000103:338827..342166-

>TCONS_00010208 ID=TCONS_00010208|Name=TCONS_00010208|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000103:338827..342166- (Clytia hemisphaerica)
CACCATCCTGCATCCATTTCCTCATCGCCATCTACCCCAACCACCAAATC
CAAAACGAAGAAACCAATGGCAATGAGAAAGAAAGTTGATAAAGCTCGGT
CTTTTGTTGATTCTTCTGATGAATATCAATCTGAAGATCAAGATTCATCA
GCACCTTTGTTTTCGCCAAAAACATCAACTCCATCGCAAAATGTGAACAA
AGAGCTGAAGGACGCCAAAACAGAAATAGATAATTTGAAGCAGTTGTGTT
CGAAAATGCAAGAACAATTAGAAGACCTGCAAGCAAAGTCATCAAAAGGA
GGAAGAAAGAGGAAATTAGAGGCTTCTATTAAAGCTAAGAGACGTGTTCG
TAAAAGTGTTGGTGACTCAATGGATGTTGATGGGTATTGTTGGGACTTAT
CCAATGGTAAAGGCCCTTTTTCTGGTGACAATAAGAAGCTATCTGGGCAT
GCTATCGAAAAGGTTCTTGGACTTTACCCTGAAATGGACAAAGTAGAGAT
TGAAAATGCTATTCGTATTAACTTTCGTTCACGAAAAGACAACAAGCGCA
AACTAGAAAACAATCCTAATTACCGCGCAGATTCATCCAAAAACAGCAGA
AAAGACACTAAACTGAACAATCGCTTGAAGGCATTAAAGCATCTGAATGT
AGATGATGAAACAAGGAGTGCCATTTCTGGTATTCTTGTTCGTCCACTTA
TGTCCTCGGATGATGAAGAAATAGACGGAAACAAGAAGACATTTATTGTT
CGTAAACCATGTTGGAGGACCGAAGGTGTAACCAATTGCTTCCATACTCT
TGATGAGGCACGTCAGAGTAATCTGTCCAAACATTCTCTTTTCCGTCTCA
TGGATAGAAAAGATGGTCCACCCTCTGATAGGGAAGAACCGAAATGGTCG
GAGGAGATGGTGAAAGCCATCAAATTTTTTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005728XLOC_005728Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010208-proteinTCONS_00010208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010208-exon-sc0000103-1575043694:341942..342166TCONS_00010208-exon-sc0000103-1575043694:341942..342166Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1575043694:341452..341567TCONS_00010208-exon-sc0000103-1575043694:341452..341567Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1575043694:341113..341186TCONS_00010208-exon-sc0000103-1575043694:341113..341186Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1575043694:340418..340509TCONS_00010208-exon-sc0000103-1575043694:340418..340509Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1575043694:340041..340144TCONS_00010208-exon-sc0000103-1575043694:340041..340144Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1575043694:338827..339427TCONS_00010208-exon-sc0000103-1575043694:338827..339427Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1510915933:341942..342166TCONS_00010208-exon-sc0000103-1510915933:341942..342166Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1510915933:341452..341567TCONS_00010208-exon-sc0000103-1510915933:341452..341567Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1510915933:341113..341186TCONS_00010208-exon-sc0000103-1510915933:341113..341186Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1510915933:340418..340509TCONS_00010208-exon-sc0000103-1510915933:340418..340509Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1510915933:340041..340144TCONS_00010208-exon-sc0000103-1510915933:340041..340144Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1510915933:338827..339427TCONS_00010208-exon-sc0000103-1510915933:338827..339427Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1491911889:341942..342166TCONS_00010208-exon-sc0000103-1491911889:341942..342166Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1491911889:341452..341567TCONS_00010208-exon-sc0000103-1491911889:341452..341567Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1491911889:341113..341186TCONS_00010208-exon-sc0000103-1491911889:341113..341186Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1491911889:340418..340509TCONS_00010208-exon-sc0000103-1491911889:340418..340509Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1491911889:340041..340144TCONS_00010208-exon-sc0000103-1491911889:340041..340144Clytia hemisphaericaexon
TCONS_00010208-exon-sc0000103-1491911889:338827..339427TCONS_00010208-exon-sc0000103-1491911889:338827..339427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:338827..342166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187187	0.232084	0.560694	0.352772	2.89157	1.51078	0.987016	0.899605	0	0.442254	0.573379	0.589698	0.246502	0	0.223481	0.215893	0.673941	0.321619	0.586761	0.196733	0	0.27709	0.183943	0.364025	0.22333	0	0.291009	0	0.209455	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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