TCONS_00010224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010224
Unique NameTCONS_00010224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010224 ID=TCONS_00010224|Name=TCONS_00010224|organism=Clytia hemisphaerica|type=transcript|length=212bp
agtaagttttatgttctttgaatatgctgttaggggtttttggaccaata
tagtttgatttcctaaagatcacaaacaagcgaggggtccctttaacTCA
GGTTTCAATTGGTTGATTAGAAGTGCCTCGAAAGTCATTAAGTGTCTTTC
ATTTCTCGATGATGACGCAATGATTTCTACGTCATCAAAGGACAGTTCAC
AAGCGCAAGAAT
Run BLAST on NCBI

transcript from alignment at sc0000103:373895..374106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010224 ID=TCONS_00010224|Name=TCONS_00010224|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at sc0000103:373895..374106 (Clytia hemisphaerica)
ATTCTTGCGCTTGTGAACTGTCCTTTGATGACGTAGAAATCATTGCGTCA
TCATCGAGAAATGAAAGACACTTAATGACTTTCGAGGCACTTCTAATCAA
CCAATTGAAACCTGAgttaaagggacccctcgcttgtttgtgatctttag
gaaatcaaactatattggtccaaaaacccctaacagcatattcaaagaac
ataaaacttact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005742XLOC_005742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010224-exon-sc0000103-1491911889:373895..374106TCONS_00010224-exon-sc0000103-1491911889:373895..374106Clytia hemisphaericaexon
TCONS_00010224-exon-sc0000103-1510915933:373895..374106TCONS_00010224-exon-sc0000103-1510915933:373895..374106Clytia hemisphaericaexon
TCONS_00010224-exon-sc0000103-1575043694:373895..374106TCONS_00010224-exon-sc0000103-1575043694:373895..374106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:373895..374106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79694	1.36373	4.75025	1.54913	15.0873	10.4319	5.39386	5.04966	3.53539	1.45972	2.83367	5.58823	1.86016	1.93179	3.17639	1.70437	4.1993	0	1.4866	6.22249	1.35212	1.97855	0	0	0	1.3855	0	0	1.55219	1.58144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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