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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010229 ID=TCONS_00010229|Name=TCONS_00010229|organism=Clytia hemisphaerica|type=transcript|length=1074bp
CGCCATGGAAAGAGCCGACCAAATGAAAATCTCACTCGGTAGAGGTGGAT
TCCGATTAAAAGGCTTCACGATCCTCCAGAATCACTCTCCAAAGATGGCA
AATCAATCGGTGTAGGAGGAATGATTTGGTATCCTAAAGATGACGAAGTA
TCGATCGACGTATCCGAACTAAACTTCGCCAAGAAACGACGAGGAAAGAA
ACCAGATGAGAAAGTTGGTATCGTTCCATCCACCCTCACAAAGCGTCATT
GCGTATCCAAGGTGCACGAGCTATTCGACATCACTGGGAAGATCACACCA
ATCACTGCGTCACTCAAGATTGATCTCCACAACATCGTACAACGTGGTTT
GAAGTGGGACGATGCCATACCGGACAACCATAGAGCCATATGGGAATCCA
ACTTCGAAATGATTCAAGAGATAAAATCAATTCGATACGCCAGAGCCATC
GTGCCTGATGATGCAGCCAACTTAATGATTGAGACCATCGACTTCGGTGA
TGCAACCGTTGCTATCTATGCCAGAATACTACGTTTAAACGGTGAATATT
CGTGCCAACTCGTATTTgctcgatcaaagattttgtcaTCGTCAACTCAA
CCTCGAGCTGAACTCGAAGCAGCTGTCCTCAACACTCATACTTCCGAAGT
CGTCAAACGTGCATTGAAGTCCAAACACAACGGATCAATCAAATTGACAG
ACAGCACCATCGTTCTACACTGGATCAGTAATGATGAAATCTCTCTCAAG
CCATTCGTTCGAAATCGAATAATCGAAATCATTCGACAAACAACTCGTGA
AGATTGGCAACACATCGACACAAACAACATGCTCGCAGATATCGCAACTC
GTAAAGGTgcaacaatagacgatatcagcAGCAAATCAACATGGATCAAT
GGGCACTCCTGGCTCAGGGGTGACAAATCAACCTTCCCAACCAAAACTGT
AAGTCAAATTAATTTCAATTCTACTGACTTATGTGAAATCAAGAATGAGG
CAATTCAAGGCAGTCGTGAAGTTTACTTGGCATCAATGAAGATTGTGTCC
GAAGTTCGAGATCACTATTCATGC Run BLAST on NCBI protein sequence of TCONS_00010229-protein >TCONS_00010229-protein ID=TCONS_00010229-protein|Name=TCONS_00010229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MIWYPKDDEVSIDVSELNFAKKRRGKKPDEKVGIVPSTLTKRHCVSKVHE
LFDITGKITPITASLKIDLHNIVQRGLKWDDAIPDNHRAIWESNFEMIQE
IKSIRYARAIVPDDAANLMIETIDFGDATVAIYARILRLNGEYSCQLVFA
RSKILSSSTQPRAELEAAVLNTHTSEVVKRALKSKHNGSIKLTDSTIVLH
WISNDEISLKPFVRNRIIEIIRQTTREDWQHIDTNNMLADIATRKGATID
DISSKSTWINGHSWLRGDKSTFPTKTVSQINFNSTDLCEIKNEAIQGSRE
VYLASMKIVSEVRDHYSC Run BLAST on NCBI transcript from alignment at sc0000103:386100..387173 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010229 ID=TCONS_00010229|Name=TCONS_00010229|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at sc0000103:386100..387173 (Clytia hemisphaerica)
GCATGAATAGTGATCTCGAACTTCGGACACAATCTTCATTGATGCCAAGT
AAACTTCACGACTGCCTTGAATTGCCTCATTCTTGATTTCACATAAGTCA
GTAGAATTGAAATTAATTTGACTTACAGTTTTGGTTGGGAAGGTTGATTT
GTCACCCCTGAGCCAGGAGTGCCCATTGATCCATGTTGATTTGCTgctga
tatcgtctattgttgcACCTTTACGAGTTGCGATATCTGCGAGCATGTTG
TTTGTGTCGATGTGTTGCCAATCTTCACGAGTTGTTTGTCGAATGATTTC
GATTATTCGATTTCGAACGAATGGCTTGAGAGAGATTTCATCATTACTGA
TCCAGTGTAGAACGATGGTGCTGTCTGTCAATTTGATTGATCCGTTGTGT
TTGGACTTCAATGCACGTTTGACGACTTCGGAAGTATGAGTGTTGAGGAC
AGCTGCTTCGAGTTCAGCTCGAGGTTGAGTTGACGAtgacaaaatctttg
atcgagcAAATACGAGTTGGCACGAATATTCACCGTTTAAACGTAGTATT
CTGGCATAGATAGCAACGGTTGCATCACCGAAGTCGATGGTCTCAATCAT
TAAGTTGGCTGCATCATCAGGCACGATGGCTCTGGCGTATCGAATTGATT
TTATCTCTTGAATCATTTCGAAGTTGGATTCCCATATGGCTCTATGGTTG
TCCGGTATGGCATCGTCCCACTTCAAACCACGTTGTACGATGTTGTGGAG
ATCAATCTTGAGTGACGCAGTGATTGGTGTGATCTTCCCAGTGATGTCGA
ATAGCTCGTGCACCTTGGATACGCAATGACGCTTTGTGAGGGTGGATGGA
ACGATACCAACTTTCTCATCTGGTTTCTTTCCTCGTCGTTTCTTGGCGAA
GTTTAGTTCGGATACGTCGATCGATACTTCGTCATCTTTAGGATACCAAA
TCATTCCTCCTACACCGATTGATTTGCCATCTTTGGAGAGTGATTCTGGA
GGATCGTGAAGCCTTTTAATCGGAATCCACCTCTACCGAGTGAGATTTTC
ATTTGGTCGGCTCTTTCCATGGCG Coding sequence (CDS) from alignment at sc0000103:386100..387173 >TCONS_00010229 ID=TCONS_00010229|Name=TCONS_00010229|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000103:386100..387173 (Clytia hemisphaerica)
GCATGAATAGTGATCTCGAACTTCGGACACAATCTTCATTGATGCCAAGT
AAACTTCACGACTGCCTTGAATTGCCTCATTCTTGATTTCACATAAGTCA
GTAGAATTGAAATTAATTTGACTTACAGTTTTGGTTGGGAAGGTTGATTT
GTCACCCCTGAGCCAGGAGTGCCCATTGATCCATGTTGATTTGCTgctga
tatcgtctattgttgcACCTTTACGAGTTGCGATATCTGCGAGCATGTTG
TTTGTGTCGATGTGTTGCCAATCTTCACGAGTTGTTTGTCGAATGATTTC
GATTATTCGATTTCGAACGAATGGCTTGAGAGAGATTTCATCATTACTGA
TCCAGTGTAGAACGATGGTGCTGTCTGTCAATTTGATTGATCCGTTGTGT
TTGGACTTCAATGCACGTTTGACGACTTCGGAAGTATGAGTGTTGAGGAC
AGCTGCTTCGAGTTCAGCTCGAGGTTGAGTTGACGAtgacaaaatctttg
atcgagcAAATACGAGTTGGCACGAATATTCACCGTTTAAACGTAGTATT
CTGGCATAGATAGCAACGGTTGCATCACCGAAGTCGATGGTCTCAATCAT
TAAGTTGGCTGCATCATCAGGCACGATGGCTCTGGCGTATCGAATTGATT
TTATCTCTTGAATCATTTCGAAGTTGGATTCCCATATGGCTCTATGGTTG
TCCGGTATGGCATCGTCCCACTTCAAACCACGTTGTACGATGTTGTGGAG
ATCAATCTTGAGTGACGCAGTGATTGGTGTGATCTTCCCAGTGATGTCGA
ATAGCTCGTGCACCTTGGATACGCAATGACGCTTTGTGAGGGTGGATGGA
ACGATACCAACTTTCTCATCTGGTTTCTTTCCTCGTCGTTTCTTGGCGAA
GTTTAGTTCGGATACGTCGATCGATACTTCGTCATCTTTAGGATACCAAA
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010229-exon-sc0000103-1491911889:386100..387173 | TCONS_00010229-exon-sc0000103-1491911889:386100..387173 | Clytia hemisphaerica | exon |
| TCONS_00010229-exon-sc0000103-1510915933:386100..387173 | TCONS_00010229-exon-sc0000103-1510915933:386100..387173 | Clytia hemisphaerica | exon |
| TCONS_00010229-exon-sc0000103-1575043694:386100..387173 | TCONS_00010229-exon-sc0000103-1575043694:386100..387173 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:386100..387173 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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