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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010237 ID=TCONS_00010237|Name=TCONS_00010237|organism=Clytia hemisphaerica|type=transcript|length=1712bp
CAACAAATACACCGATATTTCTGATAATGATCTGGACTGTATAATTTCTT
CGTTAAAGAAAGAACACCCTTTAGCAGGGGAGAGAATGATCATTGGTATT
TTGAGGTCAAAGAATATAAGGTTGCAACGTATCAAGATCAGAAACAGTAT
CCACAGGGTCGATCCTGTCAACACTGCTATAAGATGGATAAAAAAAATCC
GAGATGGGCATATTCAGTTGCAGGACCTAATGCCCTTTGGCACAATGACA
GTCTCCACAAATTAATTCACTGGAAGTTTGTTGTACATGCCTGTATTGAT
GGATATTCCAGGTTGATAACTTACCTCAAGTGTGCCCCCGATAATCTTTC
AAGTACTGTTCTCGAAGCATTCTTACATGCAACAAAAAAGTATGGTGTTC
CAGCTAGAATGAGGGGTGATCATGGTGGTGAAAATGTCAAAGTAGCTCAA
TACATGAGAACAGTTAAAGACTCTCATTCAGCATACATTCAAGGTCCTTC
AGTACACAATCAACGCATTGAAAGACTTCACTATGATACCACCCATTGTG
TCCTTAGTCATtacatttctttatttagattcaTGGAAGAAAATGAAATC
CTTGACAGATGTAATGATCTTGACTTATACTGCTTACACAAGGTGTTTTT
ACCTAGAATTCAGTCATCTCTTGATCAATTTGCCAATGGTTGGAATCACC
ATCAAATCTCAACGGAAAGAAACAAATCTCCATTTCAATTATTTACATGT
GGAATGATGGACaagaaaaacaaagatcagCCTGGCGTATCAGCCTACTT
AAATGACAATATGTATGGTGCTCAGCTGATTTCAAATTCCTCAGAATTTC
TTAATGATGAAGCTgttgaaattgaagaaattgaTGTACCACAAAGTGTC
TTGGATTTTCAATGGGGTTTTGATTTATCTACTGATGATGGAAATTTTGG
AATCAATCATTTTGAAAGGCTTAAAGAGGAAATAATGAGTTAACTTTGCA
CAAATTTAAGGTGTGAAGTTGTTCATGATaggcgaaaaatgaaatttgag
caCAGACACCTTCCACGGTGctaatatattatatataagtttattaattt
ttgtgtgCACTTAAAATTTAGCTGTTGGCCGAGAGGCTAATAAATTATGc
tgttaaaatgttcttaaagttAAAACAAATCTTACTACACACAGATTTTG
TGTCTATATCACAAATCTTAAGTGTTTGTTGTATAGCTACTGGTTGtgtc
acaaaaaagtttcactCTTTAAAGTTATTTCTCTCGActtctttaaattt
ttgacaaacaaaatcttttgcaTTACAAAGAGGGAagattaaattaaaat
ttgatgggtcattttatcaaatttggttTCACTGGATCAAAAATTATATG
TCAAACTAtagtaaataaaaaatgttctttcaaAATGGCTCAAAAACGTC
CAAattcgacctatcaaattaatgAGAAGTTATGCACCATATATCCAAAA
CCCTTTGCTTaattaaagtaattaaaacAATTATATTAACTAAAACAATT
ATTGATTGTTGAAATTGGTGGAAGCTCTTAAAAGTGTCAATTCTatactt
ttttgacgtcaaaaaaggacAAAAGCGTTGCAGAAGTGTCACATTTGATG
TCTTTGACATCATTTTTCTCAAGTTAGGTTGAGAAATCAACTATGTTCGC
TTATGAGTCCTC Run BLAST on NCBI protein sequence of TCONS_00010237-protein >TCONS_00010237-protein ID=TCONS_00010237-protein|Name=TCONS_00010237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MDKKNPRWAYSVAGPNALWHNDSLHKLIHWKFVVHACIDGYSRLITYLKC
APDNLSSTVLEAFLHATKKYGVPARMRGDHGGENVKVAQYMRTVKDSHSA
YIQGPSVHNQRIERLHYDTTHCVLSHYISLFRFMEENEILDRCNDLDLYC
LHKVFLPRIQSSLDQFANGWNHHQISTERNKSPFQLFTCGMMDKKNKDQP
GVSAYLNDNMYGAQLISNSSEFLNDEAVEIEEIDVPQSVLDFQWGFDLST
DDGNFGINHFERLKEEIMS Run BLAST on NCBI transcript from alignment at sc0000103:568952..570663 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010237 ID=TCONS_00010237|Name=TCONS_00010237|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at sc0000103:568952..570663 (Clytia hemisphaerica)
GAGGACTCATAAGCGAACATAGTTGATTTCTCAACCTAACTTGAGAAAAA
TGATGTCAAAGACATCAAATGTGACACTTCTGCAACGCTTTTgtcctttt
ttgacgtcaaaaaagtatAGAATTGACACTTTTAAGAGCTTCCACCAATT
TCAACAATCAATAATTGTTTTAGTTAATATAATTgttttaattactttaa
ttAAGCAAAGGGTTTTGGATATATGGTGCATAACTTCTcattaatttgat
aggtcgaatTTGGACGTTTTTGAGCCATTttgaaagaacattttttattt
actaTAGTTTGACATATAATTTTTGATCCAGTGAaaccaaatttgataaa
atgacccatcaaattttaatttaatctTCCCTCTTTGTAAtgcaaaagat
tttgtttgtcaaaaatttaaagaagTCGAGAGAAATAACTTTAAAGagtg
aaacttttttgtgacaCAACCAGTAGCTATACAACAAACACTTAAGATTT
GTGATATAGACACAAAATCTGTGTGTAGTAAGATTTGTTTTaactttaag
aacattttaacagCATAATTTATTAGCCTCTCGGCCAACAGCTAAATTTT
AAGTGcacacaaaaattaataaacttatatataatatattagCACCGTGG
AAGGTGTCTGtgctcaaatttcatttttcgcctATCATGAACAACTTCAC
ACCTTAAATTTGTGCAAAGTTAACTCATTATTTCCTCTTTAAGCCTTTCA
AAATGATTGATTCCAAAATTTCCATCATCAGTAGATAAATCAAAACCCCA
TTGAAAATCCAAGACACTTTGTGGTACAtcaatttcttcaatttcaacAG
CTTCATCATTAAGAAATTCTGAGGAATTTGAAATCAGCTGAGCACCATAC
ATATTGTCATTTAAGTAGGCTGATACGCCAGGctgatctttgtttttctt
GTCCATCATTCCACATGTAAATAATTGAAATGGAGATTTGTTTCTTTCCG
TTGAGATTTGATGGTGATTCCAACCATTGGCAAATTGATCAAGAGATGAC
TGAATTCTAGGTAAAAACACCTTGTGTAAGCAGTATAAGTCAAGATCATT
ACATCTGTCAAGGATTTCATTTTCTTCCAtgaatctaaataaagaaatgt
aATGACTAAGGACACAATGGGTGGTATCATAGTGAAGTCTTTCAATGCGT
TGATTGTGTACTGAAGGACCTTGAATGTATGCTGAATGAGAGTCTTTAAC
TGTTCTCATGTATTGAGCTACTTTGACATTTTCACCACCATGATCACCCC
TCATTCTAGCTGGAACACCATACTTTTTTGTTGCATGTAAGAATGCTTCG
AGAACAGTACTTGAAAGATTATCGGGGGCACACTTGAGGTAAGTTATCAA
CCTGGAATATCCATCAATACAGGCATGTACAACAAACTTCCAGTGAATTA
ATTTGTGGAGACTGTCATTGTGCCAAAGGGCATTAGGTCCTGCAACTGAA
TATGCCCATCTCGGATTTTTTTTATCCATCTTATAGCAGTGTTGACAGGA
TCGACCCTGTGGATACTGTTTCTGATCTTGATACGTTGCAACCTTATATT
CTTTGACCTCAAAATACCAATGATCATTCTCTCCCCTGCTAAAGGGTGTT
CTTTCTTTAACGAAGAAATTATACAGTCCAGATCATTATCAGAAATATCG
GTGTATTTGTTG Coding sequence (CDS) from alignment at sc0000103:568952..570663 >TCONS_00010237 ID=TCONS_00010237|Name=TCONS_00010237|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000103:568952..570663 (Clytia hemisphaerica)
TTAACTCATTATTTCCTCTTTAAGCCTTTCAAAATGATTGATTCCAAAAT
TTCCATCATCAGTAGATAAATCAAAACCCCATTGAAAATCCAAGACACTT
TGTGGTACAtcaatttcttcaatttcaacAGCTTCATCATTAAGAAATTC
TGAGGAATTTGAAATCAGCTGAGCACCATACATATTGTCATTTAAGTAGG
CTGATACGCCAGGctgatctttgtttttcttGTCCATCATTCCACATGTA
AATAATTGAAATGGAGATTTGTTTCTTTCCGTTGAGATTTGATGGTGATT
CCAACCATTGGCAAATTGATCAAGAGATGACTGAATTCTAGGTAAAAACA
CCTTGTGTAAGCAGTATAAGTCAAGATCATTACATCTGTCAAGGATTTCA
TTTTCTTCCAtgaatctaaataaagaaatgtaATGACTAAGGACACAATG
GGTGGTATCATAGTGAAGTCTTTCAATGCGTTGATTGTGTACTGAAGGAC
CTTGAATGTATGCTGAATGAGAGTCTTTAACTGTTCTCATGTATTGAGCT
ACTTTGACATTTTCACCACCATGATCACCCCTCATTCTAGCTGGAACACC
ATACTTTTTTGTTGCATGTAAGAATGCTTCGAGAACAGTACTTGAAAGAT
TATCGGGGGCACACTTGAGGTAAGTTATCAACCTGGAATATCCATCAATA
CAGGCATGTACAACAAACTTCCAGTGAATTAATTTGTGGAGACTGTCATT
GTGCCAAAGGGCATTAGGTCCTGCAACTGAATATGCCCATCTCGGATTTT
TTTTATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010237-exon-sc0000103-1491911889:568952..570663 | TCONS_00010237-exon-sc0000103-1491911889:568952..570663 | Clytia hemisphaerica | exon |
| TCONS_00010237-exon-sc0000103-1510915933:568952..570663 | TCONS_00010237-exon-sc0000103-1510915933:568952..570663 | Clytia hemisphaerica | exon |
| TCONS_00010237-exon-sc0000103-1575043694:568952..570663 | TCONS_00010237-exon-sc0000103-1575043694:568952..570663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:568952..570663 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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