TCONS_00010244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010244
Unique NameTCONS_00010244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010244 ID=TCONS_00010244|Name=TCONS_00010244|organism=Clytia hemisphaerica|type=transcript|length=1097bp
aaagAAGTGTGGCTCCTATGGAAAAATTCGACAAGCTAACCGTTATAATT
GGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTGGTGATGG
TTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTTTCGAGGCTT
TATTGATTCGATACATTATCAATTTAGTTATCGTTTCAAGCAATATGCTA
ATTGAAAAGATTTCACCCATTCAGAGCTTCACGAAAACATGTTATTTAGT
AGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGAATGGCCT
TGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGTACACTTCCT
GCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaacaaaatt
atctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCGTCTTGGTAG
TCTGGGAACGAATTGAGACACCAAAAAATGATTATTATTCATATATTTTG
GGAATCGTTTTCAGTTTATGTTCGGTGTTATCTATATGCTTTTACTGTGt
cgtcataaaaaaaattacagagTCCACTTGCCTTCAAGTGACACTATTCT
ATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCTTGGATATTC
GGCACAAGCTTCGTACTGATCAGATCGCCTCTGATTTTCACGTATCTTCT
ACTGGGAGCTGGAGTTTCATATTTTCTATGTGTCATTTGTGAAGTGATCA
GTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGGAATTCAGAA
TTTGTTTGGGCATATTCCTATGACATGATTATCACGCATATATTTCCGAA
TtggATTGTTATAATCGGCTTGTTGATTGTGATAGTGGCAACTTCAATGA
TTGCAGTCAATATGATTTATGATATCCCTTATTTGGCTACAATCAAACGA
TGGGAATCTAAGATCTGCAAAACTGTTTAGTTCGGCTAATTTGGTTTGCT
TTCCGGACTACAATTCCTTATGCTATTATCATGGCTTGGTAATATTACAC
TCTTAATTTAGCCATTAACAAACGATAAATTTCCTCGTAAAAGGTCC
Run BLAST on NCBI

transcript from alignment at sc0000104:19098..20584+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010244 ID=TCONS_00010244|Name=TCONS_00010244|organism=Clytia hemisphaerica|type=transcript|length=1487bp|location=Sequence derived from alignment at sc0000104:19098..20584+ (Clytia hemisphaerica)
aaagAAGTGTGGCTCCTATGGAAAAATTCGACAAGCTAACCGTTATAATT
GGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTGGTGATGG
TTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTTTCGAGGCTT
TATTGATTCGATACATTATCAATTTAGTTATCGTTTCAAGCAATATGCTA
ATTGAAAAGATTTCACCCATTCAGAGCTTCACGAAAACATGTTATTTAGT
AGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGAATGGCCT
TGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGTACACTTCCT
GCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaacaaaatt
atctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCGTCTTGGTAG
TCTGGGAACGAATTGAGACACCAAAAAATGATTATTATTCATATATTTTG
GGAATCGTTTTCAGTTTATGTTCGGTGTTATCTATATGCTTTTACTGTGt
cgtcataaaaaaaattacagagTCCACTTGCCTTCAAGTGACACTATTCT
ATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCTTGGATATTC
GGCACAAGCTTCGTACTGATCAGATCGCCTCTGATTTTCACGTATCTTCT
ACTGGGAGCTGGAGTTTCATATTTTCTATGTGTCATTTGTGAAGTGATCA
GTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGGAATTCAGAA
TTTGTTTGGGCATATTCCTATGACATGATTATCACGCATATATTTCCGAA
TtgggtaagtttttttttatcattgtaTCTTTATTACCTCTGCAGATTTT
TCTTCTTGAAGAGAATTTTAAACCTTCATATCACAAACCTGTtgaacccc
ttcccactggtATAAAGCATTGATAGGTATAGATAAAAGGATATACAAAC
CATCATAGGCAAAAGAACTACTCGATGATTAGAGATTCCTGAAAGTTCCT
TTTAgtttttctcaacttttttatTGAACGCACATCTGCTCAGATTTGGG
AAAATCTGCAAAGATTTGTGTATTTTTCCCCTgcaaattgaatagaaaat
tagTCATGTGGCAGGATACAccaatcctatgaaataggctaatcaTGGGC
TAATTTATGACAGTTTGTTTTCAGTTTGTTTGTTTACTTTACAGATTGTT
ATAATCGGCTTGTTGATTGTGATAGTGGCAACTTCAATGATTGCAGTCAA
TATGATTTATGATATCCCTTATTTGGCTACAATCAAACGATGGGAATCTA
AGATCTGCAAAACTGTTTAGTTCGGCTAATTTGGTTTGCTTTCCGGACTA
CAATTCCTTATGCTATTATCATGGCTTGGTAATATTACACTCTTAATTTA
GCCATTAACAAACGATAAATTTCCTCGTAAAAGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005762XLOC_005762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010244-exon-sc0000104-1491911889:19098..19951TCONS_00010244-exon-sc0000104-1491911889:19098..19951Clytia hemisphaericaexon
TCONS_00010244-exon-sc0000104-1510915933:19098..19951TCONS_00010244-exon-sc0000104-1510915933:19098..19951Clytia hemisphaericaexon
TCONS_00010244-exon-sc0000104-1575043694:19098..19951TCONS_00010244-exon-sc0000104-1575043694:19098..19951Clytia hemisphaericaexon
TCONS_00010244-exon-sc0000104-1491911889:20342..20584TCONS_00010244-exon-sc0000104-1491911889:20342..20584Clytia hemisphaericaexon
TCONS_00010244-exon-sc0000104-1510915933:20342..20584TCONS_00010244-exon-sc0000104-1510915933:20342..20584Clytia hemisphaericaexon
TCONS_00010244-exon-sc0000104-1575043694:20342..20584TCONS_00010244-exon-sc0000104-1575043694:20342..20584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:19098..20584 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.241258	2.30074	4.30664	0.807389	0.753453	0	1.25508	4.94726	3.03393	2.59399	1.49814	0.906855	2.25156	0.875652	1.17225	18.1613	12.8014	0.310408	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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