TCONS_00010252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010252
Unique NameTCONS_00010252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010252 ID=TCONS_00010252|Name=TCONS_00010252|organism=Clytia hemisphaerica|type=transcript|length=1169bp
CAAAAGTCGAGGACAGGGATGAAGAAGGGGCAAAAGTCGAGGGCAGGGAT
GAAGAAGGGGCAGAAGTCGAGGGTAGGGATGAAGAAGGGGCAGAAGTCGA
GGACAGGGTTGAACAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGG
CAGAAGTTGAGGATAGGGATGAAGAAGGGGCACGAAAAGTCGAGGGTAGG
GATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGGGCAGAAGT
TGAGGACAGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAACAAG
GGGCAGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGAC
AGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGTGCAGA
AGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAAG
AAGGTGCAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGACC
agagacaaaataaaaataaaaaaaaaataaaaggcaGAAGTCGAGGGCGG
AAGAAGAAGGAGTAGGGGTCGGCGTCAGAAGGAAGAGGAGATAGAAGTAG
GTTACTGTCATAGATACAGCTTAAAGCCAACATTCAGCCCATCTCTTGCT
TATTCTAAAGTTAACgagatgattaattttgaagggcaaaaagaaaatgt
gtgaaatattcttccaacgTATAGACAATGCTACACCTGTTGCTTTTATT
TTCAGGAAATTGGATGAGAAAAGTCGTGGGGCAAACAATCGGACGAGCCG
AGCAAATTGAAAACGACAGAGTTGGTATGTGTCCTAATTTCGAGATCAAG
TCAAACAATGGCCGATTCAATGCCAAACCATGCGTTAATTCCGATTATAA
CAGACGTGAAAATTATCTGATAAGATGAATGAAAACGCAATATGCTGACC
GAAGGAGGACAAAGACAAAGGAAGCAAAGGTCGCATGTAATCTGATTATA
GTTGATGATAACGTTACGTATATATTTTACTAGATCATCAGGGTAGATCC
CCTTCCACACATGCTCTTAGTGTACAGGCTTGGACCCGACTATTACTATT
AGAATAAGTGTGAAACCTG
Run BLAST on NCBI

protein sequence of TCONS_00010252-protein

>TCONS_00010252-protein ID=TCONS_00010252-protein|Name=TCONS_00010252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
KVEDRDEEGAKVEGRDEEGAEVEGRDEEGAEVEDRVEQGAEVEDRDEEGA
EVEDRDEEGARKVEGRDEQGAEVEDRDEEGAEVEDRDEQGAEVEDRDEQG
AEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGMNKGQKSRTGMKKVQK
LRIGMKKGQKLRTGMKKVQKLRIGMKKGQKLRPETK
Run BLAST on NCBI

transcript from alignment at sc0000104:305609..307726+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010252 ID=TCONS_00010252|Name=TCONS_00010252|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at sc0000104:305609..307726+ (Clytia hemisphaerica)
CAAAAGTCGAGGACAGGGATGAAGAAGGGGCAAAAGTCGAGGGCAGGGAT
GAAGAAGGGGCAGAAGTCGAGGGTAGGGATGAAGAAGGGGCAGAAGTCGA
GGACAGGGTTGAACAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGG
CAGAAGTTGAGGATAGGGATGAAGAAGGGGCACGAAAAGTCGAGGGTAGG
GATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGGGCAGAAGT
TGAGGACAGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAACAAG
GGGCAGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGAC
AGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGTGCAGA
AGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAAG
AAGGTGCAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGACC
agagacaaaataaaaataaaaaaaaaataaaaggcaGAAGTCGAGGGCGG
AAGAAGAAGGAGTAGGGGTCGGCGTCAGAAGGAAGAGGAGATAGAAGTAG
GTTACTGTCATAGATACAGCTTAAAGCCAACATTCAGCCCATCTCTTGCT
TATTCTAAAGTTAACgagatgattaattttgaagggcaaaaagaaaatgt
gtgaaatattcttccaacgTATAGACAATGCTACACCTGTTGCTTTTATT
TTCAGGAAATTGGATGAGAAAAGTCGTGGGGCAAACAATCGGACGAGCCG
AGCAAATTGAAAACGACAGAGTTGGTATGTGTCCTAATTTCGAGATCAAG
TCAAACAATGGCCGATTCAATGCCAAACCATGCGTTAATTCCGATTATAA
CAGACGTGAAAATTATCTGATAAGATGAATGAAAACGCAATATGCTGACC
GAAGGAGGACAAAGACAAAGGAAGCAAAGGTCGCATGTAATCTGATTATA
GTTGATGATAACGTTACGTATATATTTTACTAGATCATCAGGGTAGATCC
CCTTCCACACATGCTCTTAGTGTACAGGCTTGGACCCGACTATTACTATT
AGAATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGTATTTGGTAag
gaaaataaatgtatttattTTGAGAGGCTTGGACCCGACTATTACTATTA
GAATAAGTGTGAAACCTG

Coding sequence (CDS) from alignment at sc0000104:305609..307726+

>TCONS_00010252 ID=TCONS_00010252|Name=TCONS_00010252|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000104:305609..307726+ (Clytia hemisphaerica)
AAAGTCGAGGACAGGGATGAAGAAGGGGCAAAAGTCGAGGGCAGGGATGA
AGAAGGGGCAGAAGTCGAGGGTAGGGATGAAGAAGGGGCAGAAGTCGAGG
ACAGGGTTGAACAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGGCA
GAAGTTGAGGATAGGGATGAAGAAGGGGCACGAAAAGTCGAGGGTAGGGA
TGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGGGCAGAAGTTG
AGGACAGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAACAAGGG
GCAGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGACAG
GGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGTGCAGAAG
TTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAAGAA
GGTGCAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGACCag
agacaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005767XLOC_005767Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010252-proteinTCONS_00010252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010252-exon-sc0000104-1491911889:305609..306735TCONS_00010252-exon-sc0000104-1491911889:305609..306735Clytia hemisphaericaexon
TCONS_00010252-exon-sc0000104-1510915933:305609..306735TCONS_00010252-exon-sc0000104-1510915933:305609..306735Clytia hemisphaericaexon
TCONS_00010252-exon-sc0000104-1575043694:305609..306735TCONS_00010252-exon-sc0000104-1575043694:305609..306735Clytia hemisphaericaexon
TCONS_00010252-exon-sc0000104-1491911889:307685..307726TCONS_00010252-exon-sc0000104-1491911889:307685..307726Clytia hemisphaericaexon
TCONS_00010252-exon-sc0000104-1510915933:307685..307726TCONS_00010252-exon-sc0000104-1510915933:307685..307726Clytia hemisphaericaexon
TCONS_00010252-exon-sc0000104-1575043694:307685..307726TCONS_00010252-exon-sc0000104-1575043694:307685..307726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:305609..307726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.67402	6.52499	1.58495	1.28453	0.843906	0.787641	1.74235	2.77816	0.964731	3.23308	0.632478	0.904337	0.5653	0.391939	0.293788	0.630558	0.221942	0.0576403	0.0785701	0.041109	0.393043	0.156856	4.27169	3.78868	0.474195	0.743645	0.48671	0.324484	2.61633	3.00059
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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