TCONS_00010254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010254
Unique NameTCONS_00010254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010254 ID=TCONS_00010254|Name=TCONS_00010254|organism=Clytia hemisphaerica|type=transcript|length=766bp
CTATCAGCAACAAACACATAATACTCAAGAACCACAACAGAACTTTCTAC
CTTTCAATACTGCTAATTTTAACCCACGCAAAATGGATTATATTTATCAA
AGTCAAAAGAGTGTAAACCACTTCAACCACCACGGACTTATCGATAAGGT
ACGTTGTAGCGTATACAGCGTTTACGAGCTACTTACGGCTAAGAACAAAG
ATGACACTACCGAACTTGAGCTACCATGCCCAAACGAAAACGATATATCA
AATACGGACGAACCAGAAGATAGCCTGGATGTGGTTGAAGCCACATCAGA
TGATGATGTCCAGGTCGAAGAACCAAACCCCGTTGAGTCTTTGGACGAAC
CGAAGACTACCAAAATAGATGTAAAATTTACACTTCTCGTATTAACTGGT
CTGTTTATCATTGCTGCTATGGCATCGATGGTAGTGGCTTACGCGAAACT
CTGGCTAGATGGAAACTATAAAACCATTTTCCCCGTGTATCCTCCTGTGG
AGAAAATCACGGTATACGAACCCCAACCATTGTACGATGCATTATGGGAA
GAAAtcatcaataaacttttgtgtTTTGTGGACTGGATCCAGTTCAGTTC
CGACCCTATCCCACCACCAGAGCCATCGTTGTATGAGACCATCCAGGAGT
CTCTTTTGGATACCATGAAGTATTGTGGtatCGAATATTTTCTTCCTCCC
GAAGAGCCACCATCACTTTATGACGAAATGCTTATTTACTTTAACCAAAT
CGCTGGTCGAGTTTgg
Run BLAST on NCBI

protein sequence of TCONS_00010254-protein

>TCONS_00010254-protein ID=TCONS_00010254-protein|Name=TCONS_00010254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
YQQQTHNTQEPQQNFLPFNTANFNPRKMDYIYQSQKSVNHFNHHGLIDKV
RCSVYSVYELLTAKNKDDTTELELPCPNENDISNTDEPEDSLDVVEATSD
DDVQVEEPNPVESLDEPKTTKIDVKFTLLVLTGLFIIAAMASMVVAYAKL
WLDGNYKTIFPVYPPVEKITVYEPQPLYDALWEEIINKLLCFVDWIQFSS
DPIPPPEPSLYETIQESLLDTMKYCGIEYFLPPEEPPSLYDEMLIYFNQI
AGRVW
Run BLAST on NCBI

transcript from alignment at sc0000104:368910..385870+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010254 ID=TCONS_00010254|Name=TCONS_00010254|organism=Clytia hemisphaerica|type=transcript|length=16961bp|location=Sequence derived from alignment at sc0000104:368910..385870+ (Clytia hemisphaerica)
CTATCAGCAACAAACACATAATACTCAAGAACCACAACAGAACTTTCTAC
CTTTCAATACTGCTAATTTTAACCCACGCAAAATGGATGTAAGTATACGC
CTTTTTCtaactttaaagaaaaacgTGTCGACATGCAAATCTTCTTTTTG
GAGCATAGTCAGAGGCGATGTTGAATATGATCTTCCTTTGATAGTTGTCT
ACCGGAAGGAAGGAGAGGGCGTCACTAGTTCTCTCTCGATTGCTCCACTA
CCCTCGATCTTAATTACTGAGTATTAAGCAGATGaacacaaagaaaataa
ttcttGGTAATGTAAACGTTATTTTAAATCATAGCTTGGGTTTTTTTACT
TCGTGCATGCATGTCAGAAtgattttgacgattttgagcctcattgttct
tataaaattgttcttatcaaaaaaaagtgtttaacCTTGCTCACCGTGGC
AAGCTGAGTAAAACAAAGTCGTCATACGTTCCTATAATCTTGTATCAGAT
CGATTGTACTAGTTTGACCTGAAAAATACACTACTAACTTACCAAGTACC
TTATCGgcgaaaaaaatgtcgggggaaagtgacgaaaactttgaaggggt
gacgaaattttcccccgacgaatttcttccccgatattttatcaaccGAC
CAAAACTTtaacccgatttttttatccccgacccaaacttttacccgatt
tttaaAACCCCAgctaaaattaaaatctaatttttttacacctttattaa
ccgaaattagtgctttaaacatcgaattacaagatctttttttaaGCTAG
TGAaagaaaccatttcatttggacaatttagttgggtgaaagtgactaaa
ctGTAAATTTCgttggggaaaagtgacgaatttgaaattttagtcggggg
aaagtgacaaaaatgcctctaggtgacgaaatttttccccgacgaaaaat
acccgactaaataaaattcCGACATctttttccccgataaagtaCAGCGA
ATCCAAAAaaaaagtggataaatttttatataaagtaaaatcctcaaaac
tcatcACTCACACACTCATCTTTACTGGACTTAAAATGATTGGAATAAGA
TTATAATTTCCCGTTTAATCAATAGacattcaattcccaagatggTTCAA
TAGGTTTTCGAGATTGAAATTCATTaagtataaaaatcaaaaaagttctt
ataaacttTGAGTATTTTactttaccttaagggaactattttttgctgga
actaatttttgcggttcgcagttcaagatctaatatttaatatttgcagg
aacttaattttgcagatttctcactagaaagaaaattagagccgtactgt
gaattattcgacctttgtttttcgcatttgaaaaattttgcaggaactta
attttacggtttgggcctaaatccgcacaaaccgcaaaatttagttccag
caaaaattagttcccttaaggtatataaaaatttgtcggATTTTCGGGAC
ACACCGTAAATTTCGGCAAAGTTCGGGAATCGAGTCGAGGTTTAAAACTT
ATTGAGTCATTTCTACTGAGTGTCTTGGTCATCGCACGTCTGATTAACTT
AACGTAAACTTTTATATGAAGATTTAGTAAATTGGTTCCTGTTTATTTCA
GTATATTTATCAAAGTCAAAAGAGTGTAAACCACTTCAACCACCACGGAC
TTATCGATAAGGTACGTTGTAGCGTATACAGCGTTTACGAGCTACTTACG
GCTAAGAACAAAGATGACACTACCGAACTTGAGCTACCATGCCCAAACGA
AAACGATATATCAAATACGGACGAACCAGAAGATAGCCTGGATGTGGTTG
AAGCCACATCAGATGATGATGTCCAGGTCGAAGAACCAAAGTATGCTTTT
TATCTTCATTCGCTTTACATACTTTAAATGACTTTTGATGTTCGAATAAT
CAATAACCTTCAATAACAAACTGATTGTGCGTTTTAATAAAGAAAGATAT
AAACTGGAGCATCAGCCCCTAAAGACCTAACAAATTTCCGTGCCTCAAAA
TTATTATGCCCAGGACAGATTAAGGAGAAATTGataatattatttttatc
aTGTGTATTTTTAGCCCCGTTGAGTCTTTGGACGAACCGAAGACTACCAA
AATAGATGTAAAATTTACACTTCTCGTATTAACTGGTCTGTTTATCATTG
CTGCTATGGCATCGATGGTAGTGGCTTACGCGAAACTCTGGCTAGATGGA
AAGTAAGTATCTTCGAATCTGTTCTAAAATGTCGAAATAGCAACAAACAT
CCGCAATTTTTATAAGCGTTTTACTACCTTAGCGAACAAATTCCACAGTG
ACCAATTTTCGTGGAACTAATCTTCGGGTTCTTCGGTGTCTACTAATAAG
TTCCGAGAAATGCAAAATACTATGTACATCCCCTGGGGGTggggggttac
ttaggcaaatggagggtacgggatgtgccgcccttaagggtatctttttt
ggacttccaaagtcccgttaagggtcggaaaaatcagaaaatataatttc
agtcccactaagggtcggaaaaataggaaaatttcaactttttaccccct
gaaagatcgaaatttggtcaaaattggtcaaaatttgttctgctaagggt
cgtaaaattcccaaaattttcctttgttttctcctttttagtcccggcaa
gggtccaaagttcgaaagtcgggcggcatctccccgtcagctcgcaaccc
tagtccccccccccccgggtacaTCCCTTCTTGCAGCTCAAAAAGGAGGT
ATTCACTGAAATTAACTTTTCTAAATCTTCTATGAAATTCTTAAAATGCT
TGTTGGATTCTtggaactttttaaaattgcCGAAAATCCTACAAGTTTTT
AGATGGTTTTGTGAGAAGATATTGAGCTCCTTCCCTCAAACTGTcagtaa
caaaattgttgaaaaaatggCCATGCTGGTTACTGAGAAATAAAGTGGTT
AGTTTCAATggtaaatttgaattatttcaaatcaTCCCCTTCGGACAGCT
TTGCAATATATCATTGACTGAAGATGACATTGAAACTGCGAAATTCATGA
AACAGCTTACAGGGGTCTCTCAGCCTTTGGCCAAGAAACTGGTGAAGCTC
ATTTCGAGATCGTTAAATCAGATTAGATAAGACTCGCTGTTTAACCATAA
TTTAGCATTAGacgaatttttttctgtttacatTTCAGCTATAAAACCAT
TTTCCCCGTGTATCCTCCTGTGGAGAAAATCACGGTATACGAACCCCAAC
CATTGTACGATGCATTATGGGAAGAAAtcatcaataaacttttgtgtTTT
GTGGACTGGATCCAGTTCAGGTAGGTTTCATAGTCAGGAAGCAgaattca
atatctcgagttagaagcgtttttgcttaaccctaaaaaagaatggggta
gttatataccgttggaacggaaattttatgctgattatggaaacccaggt
cgtaaaaagtctatcctggacgattttgaaaacgaggctggagtttgcac
tccttcgtggtgttttttcgattttacttgttttagaaaaatgctgactg
tcagcaaagtaaaagtttttagaatttcatttttttggaaaattgctACC
AATAAAATtgccttttagcaaaaaattcaaaataaaaaaaaacaattttt
ttgcactccttcttggaggttttttgcaaaaatcagcgtttttacaaaaa
tatactgctaAAACAAGTCTGCTGGCAACTGAAATCCGGTTCAAATGACC
CCTATAATGGTTTTGACGGAAGAACTATATCTTACCATGACAAAAAACCG
AAAACTGCtgtcaaaaaacaattatttggctttttgctctccttctttgg
tgttttttgacaaaaatcgattttagccatttttaaccaaaattcgactt
ttACAAACTTTTCCCTTAATTTTGGAAACTGAATGCcttcgtatctctaa
aagttattctccattatgtgaaatgatgaaaaaaatcaaaaattgatctc
ctccgttgatgctttttgaccaaaaagtgaTGTTTTTGAACGAATTTCTG
CCTGTCCAGGGGAATTTCAGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGTCCAG
GGGAATTTCAGGCTTAATTTAGGGAACCCAAAATTTGCGTACacgtgaaa
ttttttgattgaaatgtgttcattaggtccttaggagtgaaaagccatcg
agtgacactttacacaccttgggcattttccataatggtggaaatttcaa
aatggcggaattttttttaaattttgatgtctctgaacatagacatatta
tttaccgttggaaagggttttttcatgctgaacaacttttttgcttacaa
aaaagtcataaaatgtactcaatgtgaGTAGAAAGGGACAGAAGGTGTTA
CAATGATGCCATCATCACtaccaaaaatttgacattcgcttcaaattatt
gaaaaggatttttcattactcacgaaaaagtctgaaatctAATAAGTAAT
GTGTAATGTACGAGTAAAAAGTGATAGAAGGTATCAAAATAACGTCATCA
CTGTCCAAAGAATTGACATTTGCTCCATTATATTGATGAATGTCTATATA
CCATTGGAaagtattttcatgctgatgttGGTGCACCATAAAGAAGCACT
GATTCGACTGTAGCANGGTTGTGTTTAATCTTGCCATGAAGGTTTGATTC
AGTAGTAATTACTTAATCATTTTGAGATTCTCACTTTAACATTCCAGTGG
AGGCTTTGTGACTGCCAAGGTAGTTGAATTCTTCTACATTTTACATTACA
AGAGTATATCCATGTATTCGATCTTTTTTGAGCTAACATGTAGAACTATG
AAAGGAGAAACTTTGATAGTGTGGAAGAGTTTTTCTGCATCTTCGGAATT
GCCCAGATTGTATCTGTAAAGAAGTACCTGCTTCTTGATCTTTGGGGAAT
AACACAGTGGCATATCCACGGGGAGATGGGCAGTTctcccaaaaaaaatc
aaaattgaccaaaaaggtcaaagttttcccaatAGAATGTGAAGgggtct
gtagtttttgtaacctttttctgGCTACATCTGACCTTTTTAAGGCATCC
TTTATAAAGCTGCTTgacatttcttagaaaattctttttgcgttttttac
actttttatgaCTCTATTCTCACTAACTTTGAGATTTCCAATGCCATTTT
TTAAGCTATTTGAACTTGCTTAATAGTACAGCAAAAATTTACGCCTGCGG
CGCATAAGATACGAGAAAAGTTTTCTCCGAAAATTTCCTCTAAAAAAGGT
GTAAATTTTTCCAAtctcgcccccccccccccaaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTCTAGCGACAGTTTAATAGAAAAGGTGCCAGCGCACTT
TTATCGAAGGCATCTGTATCATTTAAAGGCGATTTAACGATGGTATTTGT
TCTGTAATTGAATTGATAATTGGATTACAAAGAATCGGAATCCCAAGTCT
AAAATATAGGCTTGCGTTATGATATAGTTGAGATCTTCAAACTTTTGAAT
CACTATGACAACAAATCAtgtgtttctaaaaaaattaaccAAGAAATAAG
ACTTGAGAACACAGCTCTGAACTGGTAAAAGTTTTCGAAAGTTATGGTGA
TGATCGTGGACCCTATAGCAAATCTCTTTACTATCGAGGCATCAATTAGT
GGAATAGTCTGTctgaaaaagtagttaaatcaTCAATCATCCAAGATATA
AGAGTTTAAAGAAGACCTTGGAAAGACGAAATGTTTGGGTATGATTGAAA
atgtcactattgttgcatatcTGTAATATCTGTATCTTGTAATAAAACAA
AGCAATGTGTGAGTGATTTATAGATGCCCAAGTGCTTGCTTCGGAATCTG
TAAAGCTTTACTATTACTTAGttgggcccccagcggtttgNTGTGCTTGC
TTCGGAATCTGTAAAGCTTTACTATTACTTAGTTGGGTTAATgcgtgaaa
atccatttttttatTGCGTTATGCGTGAATGTAGTTGAAATATCATAGTT
GAAGCTGTTTTTTGTGTGAacacgtgaatttttccttctcACCCAAATTT
GTGCAAATTTCCCCCATCTTTGACAATTTCcctgattttttccaaaaatt
tgagaCGTCATTTTGACACCTATTGCTCATTGAgtttaagcccgaagggc
tagaggagaagctttaacctttcttaggcaagaaaaagtgaagccttaaa
aagtgCGCCGAATTTTTGAGgtcggattgaatctagcgatttctttgttt
ttgagtgatactttttcaaaaatttggcgGTATCAATCCGGCATTTGTTA
GAAATCCAGGCGGGTCGCtctaggccgcgcaactttggtaggattttttg
GCTTTAAGTCCTACCAAaaagattgacttctagccttcggcttataTTTC
ATTGCTATTGCTTTATACTCTACATTACATCCTACATAACACATTACTCA
GTAAAATTTCAGACTTTTTAgtattaagcaaaaaaaatgttcagCTCGAA
AAATCCTTTTCCGGGGTGTCTACAGAATTGTTCTCATTAGTTGCAAGGTT
TTAAGCTTTGTAGGGTCAAATTTTAGGTATTTTTCACGGTTTTCGGTTCA
TTTATTGAGTATCTTTAAGGTTTCTCGGGGTTCCATTTGATTTTGACTGG
TAGTAATATCCTCTTGAACGAGGTGTGTATAAAAGATTATTTCGTAGTAT
TCTCGAGATTACGAGAGAAACGAGAGAAGCAAGCAcgcaatttttttgga
aatattggTTGTATAGAAAGAGACTTCGGGAAAACACAAATCGAACCACA
AGGCAAAATGCTCTTTTTCGAGGTTTTCAAGGAATTCCTTTAGAACATGT
ACACTTTTCAAGGTTGTTTGGTCTATTTTAAAGTTTCttaaaggttttca
aggtccttTAGTCACTCTCTTTTAAATGATTTgaagcaagtgtcaaattt
ttggtggtgatgatgacatcattttaacacCTTTTATCCCCTTTTACtca
cattgagtacattttatgacttttttgtaagcaaaaaagttgttcagcat
gaaaaaccctttccaacggtatataatatgtccatGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTCagagacatcaaaatttcaaaaaaattcaaa
atccgccattttgaaatttccaccattatggaaaatgcccaAGGTGTGTA
AAGTGTCACTCGATGGTTTTAACTCCTAAGGACCTAATGAtcacatttca
atcaaaaaatttcatgtgtACGCAAATTTTGGGTTCCCTAAATTAAGCCT
GAAATTCCCCTGGACCATTAGGCCGAAATTCGTTCAAAAACAtcactttt
tggtcaaaaagcatcaacggaggagatcaatttttgatttttttcatcat
tttacataatggagaataacttttagagatacgaagGCATTCAGTTTCCA
AACTAAAGGGAATAATTtgtaaaagtcaaattttggttaaaaacggctaa
aatcgatttttgtcaaaaacaccaaagaaggagagcaaaaagccaaataa
ttgtttttgacagcagttttcgtttttttgtcgTGGTAAGATATAGTTCT
TCCATCAAAACCATTAAAGGGGTCATTTGAACCGGGTTTCAGTTGCCAGC
AGACTTGTTTtagcagtatatttttgtaaaaacgctgatttttgcaaaaa
acctccaagaaggagtgcaaaaaaattgtttttttttNgctgatttttgc
aaaaaacctccaagaaggagtgcaaaaaaattgtttttttttattttgaa
ttttttgctaaaaggcaattctattggtagcaattttcaaaaaaaatgaa
attctaaaaacctttactttgctgacagtcagcattttactaaaacaggt
aaaatcgaaaaaacaccacggaggagtgcaaactccagcctcgttttcaa
aatcgtccaggatagactttttacgacctgggtttccataatcagcataa
gATTTCCGTTCCAATggtatataacaaccccattcttttttagggttaag
caaaaatgccatttttggatTCTGCTCCCCGACTATCAATACAAACTTTA
TAAAATTGGTCATATGTTTATTTTGATATGTATATAAAAAggactttctt
tcttttcttgcaatgaaaaaaaacaaattggcAACAAACTTCGCCAAGCA
CTTCTCTTTACTTTTGAAAAGTAACTCAGTAGAGCTTAAagtctaaaaaa
ttgaaattcagtGTCAGATCAAGCCACGCCGAAACAAAGAATTAATTcgc
ttttaaaaattatttgaatttgaTCTGGAATGTAAAGAATTTCATCGTAT
TTATTATTTTAGTTCCGACCCTATCCCACCACCAGAGCCATCGTTGTATG
AGACCATCCAGGAGTCTCTTTTGGATACCATGAAGTATTGTGGGTAAGAA
ATTATGTTTATTGCTTTGCACGCTTTGAAAGATGAAACATCTACCGTTTT
TATCGTCATTTTCATAGAATAATAATTCTTAACCGAAAAAGTTCAACAAT
TCTAGTATACAGATGGCATATTCacaaatattgaaacattttacCCTTCT
GTCTTATTATTGATCGTTATTCCAATTCCTCTGCTTTTCCTTTCATAATG
ATACTCAACAACCTATAATCAAAGATCTCCtaataagaataaactataca
TAGGGCTTCGATGATAGAACAAGTTAAGattattttaaggcttcgcgaaa
tctaaaacagccaatttctgtaaataagaacattttaagaacattttttc
agCTCAACACTCAAGAATAAGACCATCCGAAGGTACGTGTAATGCATCGT
ACCAGCTCTAGTGTTTCAACAACCCAGGTCTAGTGCAAATAggaaagggg
atagactccctcacaaGGATTCCCCTCTGTCTAATGACATTcttgttctt
ttatttttcagtatCGAGTATTTTAGCACTACCGAAGAGCCACCATCCCT
TTATGACGAAATGCTCAATTACTTAACCCAAATCGCTGGTCGAGTTTGGT
TCACATGAtcccataaaaaaatttataaaaaatacaaaaaaaaaatgtaa
aaatgttcATGATgtcatgaaaaagaaaatgttttggcCTTGGTGCTTGT
TTTTAAGGTGAAGGATATTAGGGGTAGGATAGTTTTAGCGCTTAACATTT
TTGTGCATAGAACTTTTATGACATCTTTTAGACGAAAAGCTCTATAAAGC
CAACAAAGTACAATTTAAGATCCTTATTTCCTGAGATGATTTTCACTAAA
TCTTGAGATATCTCCAATTAGAGTCAAGTGAAGAACAACATCCATGTGga
acatcgaaaagccctcaaAAGAACATCAGAAGTTCCACTCTCACAGACAC
ACAGCCCTCATCATAACATCAAAATCTCAAATTGGAGGTTTCTCAAGCTT
TAGGGAAAATCATTTCACGGAATAATAATCGAAGTTGCATTTTATTTGAC
ATAAACTTTTACTTTATAAGGCGACAACTATCAAATTTCTAAATCCTTTT
CTTTAATTACTAGTACCAGGTctaaacacaaaacaaaatcgTGAATAGTG
TGAATAAATTGTTTGAGTTGTAAAAAGAATAATTAGACcgttttcataga
aaaacaggcCAAAAAGACGGTTTTTGAAACTAGTCCGTAAAAATAGTTAA
ACCTCAAAAGTACAATTTTCAAACCCCTTGCTATACTCAAGTGTCGTATC
CACGGTGTCTCTAGGCTGCACGAATCCCCCTGTAATGTTTTAATAGAGGG
GAGACGCATCGTATATAAAATTACCGTCCGAAACAGTCCGAAATACACCC
GTCattgtgtttttgagttttcgAAAGTTTTATATGAAAGAACCGTAAAT
TTCATTAGAcatgagtttaaaatttgaatggctagGTTGGGGCTTCATCG
ATTCGAACGTCAAATCCTTTTTTGGACGGGGGTTagataaaagataaaaa
cacGAAGTATCATCAACTactttttcgaaagaaaatcaGATTTTTTGTCT
TAAAACTGCACGAAATCCCTCTTCCATACTCGAAacaaccccctggaaaa
tttgagaataaaAGCTCAGCTACTATCTTGCGTTACACACATTTTTCATT
AgctcatttagtatagtaacATTAAAGCAACTCTCAGACGGAAATTTTAT
agaggggggtacttaggcaaaaatggatgatggatatgtgcggacggtaa
gagtcggttttttcacctttcaaagtttctctaagggtcggaaaaatcag
gatttttaggaaattttttgatttccagagaaaaaaaattcaaaaagtct
ctctaagggtcggttttcggaggtcccgtccgcacatacccctcattcgc
caaccctagtaccccccccccccccggNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNccccccccccccgggtatctATATCAATCCATATATATCACC
CCTATATCAATTTCGGCGATGCGCGCAGCTTACGACGTTTCCTCCTTCCA
TCTTCAAAAATAATATTAGCGGCAACAAAGTTCAAATTCCCCCGATTTAA
TATGTGGAAGGTGAGTTTGTACTTGTTAACTTACTCTGGCTTAGACCTTT
TGAAAACCTTCCTGAGTTGCTTTAAAGACCTTTCTTGGACAAAAGACTTA
AAATTTAGTTGAGTTGAGCTTGATATTTTTATAATGTTGCGACGTCAGAG
GGTGCCATTATAATGCAGAAAATACAAATTCATGTTCGTTTGTTGTGCGC
AGATTAAATTTTTGCACAGATACGTAAGTCTTTTGCACAGATACGTAAGT
CTTTTGCACAGATACTTAAGTCTTTTGTGCAGATACGTAAGTCTTTTGCA
CAGATACGTAAGTCTTTTGCACATATACGTAAGTCTTTTGCACAGATACT
TAAGTCTTTTGCACAGTTATGTAAGTCTTTTGTGCAGATACGTAAGTCTT
TTGTGCAGATACGTAATTTTGGAGCTGCGCAGTTATGTAATTATTTTCTG
CACAGTTATGTAATTAGTGAACGGTTTTATGATAACgtttttgtaaaaat
tcaatCCCAATGCGAAATTACCACGAAAAAGACGTTAGATGGATGTTAAA
TGGACGTTATCATTTTTAAAGGATGTGGAATGTACCTAAGCCCTACCATG
CtaagtttcatttaaaaattcaatcCCAATCATTAATTATCATGAAAAAG
ACGATAAATGGATGTTAAATGGACGTTATAATTTGAGAAGGGTGTGGTAT
TGTACTAAAGCCTTATCATGCtaaagtttatttttaaaaaactaaaaaaa
gtccATCAGATAAAATGTAATCTTAAAACATTTTGCTACCTGCGCAGAAA
ATAATTACATAACTGCGCAGCTccaaaattacatatctgcgcaaaataat
tacatatctgcgcagaaattacatatctgcgcaaaataattacatatctg
cgcacaaCATCGTTTTAACTAAAGTGTTTCCAAGGTAACGCCAcgataaa
agaatcttatttattttatttatttatatctCTTTATTTTACGTCACATG
TCCACCAAAACAGTATTTGACGTCACAAACTCTAAATAATTTCCTATAAT
TAGAACTTTTATCAAGAATGTAAAAACATATCACTGACACAATAAAACCA
AGGCACTTGTTCACACACAACATCTACACAAGCTCATACCATCAGCACTA
ACCCAACAATTTGCCGcacatcaaaatcattttaaccttacaaaactttt
aaattgaCAAGACAAAATGGAAGTAAGCATACATTAATCCTTTTCAAGTA
AGCGAGTGCAGTAAGAAAGTGACCTAATGGTTCAAATTTATACTGataat
ttttggtattttgtcgTTTTTCACAATTCAAAGTTCGGGTGAGAATTGTG
ATTTCGGTAGTTccacttttttttcattggaaatTACGATTGGGAGGGGG
TCCAGTGGTTTCCAGGCTGTATTCAAATATTATGCACTTCATTACACCCT
TCATTGTAATGGTTCAAATTTGActcgcaaaaaaaattaatcacttATAT
GTTGAAGTACAGCAACAAGTTGCAATCAAACAGGCCTCGTGCACTGAAGT
CTTCAAACGCGTCAGATGACTGAAAAACTTAAatgccaatgaatttttat
ataaataaaattttctgaatCTAGCTCTTTCATCCGGAAAACTTCTAACA
AGTCCTTGTCTCTGGTTATTTCAGGCAATTAGAGAAAGTCAAACAAGTGT
TAAACCATCTAAACATGAATAGGCTAGTTGATAAAGTACACTTCAGTTCA
AGTACACTGTATACGCTATATCGTAATAGTCGCCTGTTATGCTACAGTGT
ATGCAGCGTACTCGAACTGTTAACAGCTTCGAACGACAATCCTTTTCcat
ttgaaagaagaaagataaacttaaatttcgatgggtcatttatcaaattt
gactcgttggatgaaaaataaaagttatgcCCATTTGAATATAGCAATCA
CTTTCAGAAAGTGATCAAAAACGTTCAACCGACGTTCAATCGTTCAATCA
AACGTTCAATCGACCgctcaaatttttattttaaaattggcagtCACGTT
AGCCCTTGCACAATTAAGAGCACATTTTGGTCAGTATAACCTTAAATATT
AATTTCTATGAATTTcgtgaaattttgattgttggATTCTTGGGACTTTT
AAATGTACCGAAATCGTCTTTCAATGGTTAAGAGAAATTATTATGAGCTT
TCTCTAACGTATGTTGTATCTTTGCCAGGGTAGTTTTTCTCAGCAACGAT
ACAATATGATGTGATACTGCACAAAAAAGAATTTCGCAGACATTCTATAA
ATTTTGAATGCTCATTGGATTATTGGAATTTTTAAATGTGCCATTAACCC
TATTAACCCCCGAtaagcattttcgatttctgtAGCCCCAGGGGAAGCTA
AAATCGACTACGTACTACTGATCTAAAAAAGCTATGACCATGAAAATTGA
TACAGGTATGTTGCATCATAATACAAATACCAGggagaaaaatcacaaaa
tcacaaaatgtcCACCTGTCCGAAAAAGATCCAAGtgtatgatttaaaaa
aatgtctcTCAGAGTTGAACCAATgaagatatttagattctgtttgatGA
TCTAAAAGATGAATGGCaattctttaacataattgttGGTTTTGTGTTTT
AATGAAGATTCACCATTAAAATCAATGcggaaaaaaaacgaaattttcaa
aaaattacctATCACatatcaaattttgaatttcattaGTTTAGAAGATA
GTAGAATTTTAGTTTGACTTTTAggcgattttagctgggttttatatcat
gtttcacaataaagtcattaAACCTGATTAAGACTGCACACGTGGTAGAT
TCTGGGGGCAAATAGTGTCGAGACAACGTGTGTTTTGTGAGAAGACAGAT
AATGATTTGCATTCTTccccaaaaaatatcaaaaacaaaaatgctgaaaa
tctaCACTGAGCTTTCTCTAATTTCGGTGAATTGCATTCGTACCAGAGAC
ATATTACGCAGTACTTTCTCTCTGCAGAAATGAAAATACTTTTGCAGACC
TTCTGAAAAGTTCTTGAAACGCTTGTCATATTCTTAGGGCTTTTAGCAGT
GCTGAGAATTCAACAAgttttttaatggttttaagAGAGGACATTAAGAT
GGGACTTCAGTGTCTCTACCAAAAATGTCAGCAACATAAATCCTgaaaga
aataccaaaaaaagacTAACAATTTTCCTATTCAACCAAAGGCACTTGCT
TTAAACATTTACACAAGCTCATACCATCAGCAACTAACACTCACCCCTCA
AGCTTAAATGCTTTGGAACCATTTATTCAAACTGAAATAGATACAAATga
gtttataaaagaaaactggaaaataaattaaaagttAATGAGTATGAATA
AAATATAAGTCTATGTATAGTTGAGTCTAAATTGAGTTGGTTGAGAAAGT
ATAGGTCAAGATACCGCATTTTAATCCTCCTTTAAATTCTCTCCAGTAAA
CTTATATATTAATATTTAGTAAATTGGTTCCTGTTTATTTCAggttgtca
ataaaagtgagaAAAGTGTCAACCACTTCAACTCCATTGGACTTATCGAT
AAGGTACAAAATAGCGTTTATAGCATATACGAACTGTTAAAAGCTAAAAG
GAACGATGACGCTACCGAACATGTCCTTCAGCAACCATGCCCAATCGAGG
ACAATATACTAAATGTTCAAACAGAAAACCCAGAAGATAGCCCAGATGTG
CTTGATACCGCATCAGATGATGATGTCCAGCTCGAAAATCAAAAGTatgc
tttttattttgatttgcttTACATACTTTAAATGACTTTATTTATTATGC
CCAAGACAGATTAAGTAGAAATTAATTAATATCATTTTTCACATGTGTAT
TTTTAGCCCCGTTGAGTCTTTGGACGAACCGAAGACTACCAAAATAGATG
TAAAATTTACACTTCTCGTATTAACTGGTCTGTTTATCATTGCTGCTATG
GCATCGATGGTAGTGGCTTACGCGAAACTCTGGCTAGATGGAAAGTAAGT
ATCTTCGAATCTGTTCTAAAATGTCGAAATAGCAACAAACATCCGCAATT
TTTATAAGCGTTTTACTACCTTAGCGAACAAATTCCACAGTGACCAATTT
TCGTGGAACTAATCTTCGGGTTCTTCGGTGTCTACTAATAAGTTCCGAGA
AATGCAAAATACTATGTACATCCCCTGGGGGTggggggttacttaggcaa
atggagggtacgggatgtgccgcccttaagggtatcttttttggacttcc
aaagtcccgttaagggtcggaaaaatcagaaaatataatttcagtcccac
taagggtcggaaaaaNCTAGATGGAAAGTAAGTATCTTCGAATCTGttct
aaaatgtcaaaatagcTGCAAATATCCGCAATTTTTGGGCGTTTTCTTAT
GATAGGGTCATAAATGTCAAATATTTAGTTTTTAAATGCACCTATGAGAC
TCTtactattttatattttttccccGAAATCTTCTATGAAATTCTTGAAA
TGCTTGTTGGATTCTTCGAACGTTTTAAAATTGCCGTTTTGTGAGAAGAT
ATTGAGTTCCTCCCCTCAGTAACAAAAGTGCTGAAAAAATGACCATGCTG
GGGGTACTGACAAATAAAGTAGTTAGTTTCAATGTTAAATTTCCCACGTT
TTCATCCCATTCAGACACCTTTGCAATATATCATGGACTGAAGATGGCAT
TGAAACTGTGAAACTCGTGAAACAGCTTACATGGGTCTCTCAGCCTTTGG
CCAAGAAACTGGTGAAACTCATTTCGAAATCGTTAAACCAGATTACATTA
GACTGACTGTTTAACCATAATATAGCATTATGTTATAGACGaattctttt
ttgtttaaatttcagttttaaaacagtttttcctgTGTATCCTCCTGAGG
AGAAAATCACGGTATACGAACCCCATCCATTGTACGATGCATTATGGGAA
GAAATTATTagtaaatttttgtgttttgtggACTGGATCCAGTTCAGGTA
GGTTTCaatacaaactttacaaatatgaTCATATGTTTATTTTGATATGT
GTATTAAAAGCACTTCGGAGATTCAATTTCTGTCTTTCTTTTCGTGCATT
ATAAGCACCCAATTAGCAACAAACTTTACCAAATATTTTCcctatatttt
tgaaaactcagcATAGTCTAATTAAAATTAAGTGTAAGATATAAGCTATG
CCGCAACAAAGAAATGATCAACCCTTATAAATAatcttaaaattatttta
atttgatCTGGaatgtaaaaaaagaaattctatcttatttattattttag
ttCCGACCCTATTCCACCACCAGAGCCATCGTTGTATGAGACCATCCAGA
AGTCTCTTTTGGATACCATTAAGTATTGTGGGTAAGAAATTATGTTTATT
GCTTTGCATGCTTTGACAGATAAAAGATCAACCGTTTTTAtcataataat
aattttcaaccgaaaaaattcaataattctCGTATACAGATTTCCCAAAT
AATGAGACGTTGTGCCCCTTATTATTGATCTTTTTTCAAGACCCTCTGTC
CATTCTTTCTTGATCATACTCAACGATCTATAAAATCAACCATCACTTTC
ATAGCGACGCTCCAACACCGGATTGTCTACCGAATGTGTAGCTTATTTTC
TCTAGCGTTTCGACAAAATATGTCATAAAGATGACCCCCTGTTTAATAAC
TtccatatttatttatttttcagtatCGAATATTTTCTTCCTCCCGAAGA
GCCACCATCACTTTATGACGAAATGCTTATTTACTTTAACCAAATCGCTG
GTCGAGTTTgg

Coding sequence (CDS) from alignment at sc0000104:368910..385870+

>TCONS_00010254 ID=TCONS_00010254|Name=TCONS_00010254|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0000104:368910..385870+ (Clytia hemisphaerica)
TATCAGCAACAAACACATAATACTCAAGAACCACAACAGAACTTTCTACC
TTTCAATACTGCTAATTTTAACCCACGCAAAATGGATTATATTTATCAAA
GTCAAAAGAGTGTAAACCACTTCAACCACCACGGACTTATCGATAAGGTA
CGTTGTAGCGTATACAGCGTTTACGAGCTACTTACGGCTAAGAACAAAGA
TGACACTACCGAACTTGAGCTACCATGCCCAAACGAAAACGATATATCAA
ATACGGACGAACCAGAAGATAGCCTGGATGTGGTTGAAGCCACATCAGAT
GATGATGTCCAGGTCGAAGAACCAAACCCCGTTGAGTCTTTGGACGAACC
GAAGACTACCAAAATAGATGTAAAATTTACACTTCTCGTATTAACTGGTC
TGTTTATCATTGCTGCTATGGCATCGATGGTAGTGGCTTACGCGAAACTC
TGGCTAGATGGAAACTATAAAACCATTTTCCCCGTGTATCCTCCTGTGGA
GAAAATCACGGTATACGAACCCCAACCATTGTACGATGCATTATGGGAAG
AAAtcatcaataaacttttgtgtTTTGTGGACTGGATCCAGTTCAGTTCC
GACCCTATCCCACCACCAGAGCCATCGTTGTATGAGACCATCCAGGAGTC
TCTTTTGGATACCATGAAGTATTGTGGtatCGAATATTTTCTTCCTCCCG
AAGAGCCACCATCACTTTATGACGAAATGCTTATTTACTTTAACCAAATC
GCTGGTCGAGTTTgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005769XLOC_005769Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010254-proteinTCONS_00010254-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010254-exon-sc0000104-1491911889:368910..368997TCONS_00010254-exon-sc0000104-1491911889:368910..368997Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1510915933:368910..368997TCONS_00010254-exon-sc0000104-1510915933:368910..368997Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1575043694:368910..368997TCONS_00010254-exon-sc0000104-1575043694:368910..368997Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1491911889:370561..370799TCONS_00010254-exon-sc0000104-1491911889:370561..370799Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1510915933:370561..370799TCONS_00010254-exon-sc0000104-1510915933:370561..370799Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1575043694:370561..370799TCONS_00010254-exon-sc0000104-1575043694:370561..370799Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1491911889:371024..371161TCONS_00010254-exon-sc0000104-1491911889:371024..371161Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1510915933:371024..371161TCONS_00010254-exon-sc0000104-1510915933:371024..371161Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1575043694:371024..371161TCONS_00010254-exon-sc0000104-1575043694:371024..371161Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1491911889:372148..372279TCONS_00010254-exon-sc0000104-1491911889:372148..372279Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1510915933:372148..372279TCONS_00010254-exon-sc0000104-1510915933:372148..372279Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1575043694:372148..372279TCONS_00010254-exon-sc0000104-1575043694:372148..372279Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1491911889:377722..377802TCONS_00010254-exon-sc0000104-1491911889:377722..377802Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1510915933:377722..377802TCONS_00010254-exon-sc0000104-1510915933:377722..377802Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1575043694:377722..377802TCONS_00010254-exon-sc0000104-1575043694:377722..377802Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1491911889:385783..385870TCONS_00010254-exon-sc0000104-1491911889:385783..385870Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1510915933:385783..385870TCONS_00010254-exon-sc0000104-1510915933:385783..385870Clytia hemisphaericaexon
TCONS_00010254-exon-sc0000104-1575043694:385783..385870TCONS_00010254-exon-sc0000104-1575043694:385783..385870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:368910..385870 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0636943	0	0	0	0.171791	0	0.0818891	0.153327	0.107348	0	0.0645309	0.12726	0.0423611	0.17597	0.651019	0.155254	0	0.245045	0.677085	0.0708521	0.0615833	0.180229	0.219092	0.132791	1.57287	2.56337	0	0	0	0.0720278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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