TCONS_00010255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010255
Unique NameTCONS_00010255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010255 ID=TCONS_00010255|Name=TCONS_00010255|organism=Clytia hemisphaerica|type=transcript|length=696bp
CTATTCTTTTCTACGTTACAAATCACAGAAGTCAAATATGGAGAATGTTG
AACCAGGTTCAAGGAGATACGTCCGAAGATCAAGgttacaaaattctttt
gttaaaactcGCTCCGAGGCCCGCCCTCGCAATAATCGAACAATCACACC
TGTCGTTACGCCCAATGTACAAATTGTATCATCCAACACCCAGAGTGCGT
CCCTACAAAATAATGCCGTTGCTGTTACAAGTACACCGAGACGTACGGCG
AATGAGAAAACGGTAGAAGAGGTATTCACACTACGCGATGGATTAATGTT
TTTAATGACGGCCGTGCTTGTGTCATCATTAGCGTACGCCTTTACGTTTC
ACACTGAATGgtTTCAGTGGCCGTTCCAGTCATATCCACCTGTTGAAGAA
AAGATTTATGAGCCAACGCCCTCATTTTACGAATCCTTATGGCAGAGCGT
TATGGATAAATTAGTAAATGTGATGGATATTGTAGCCGAAAAATCCGGCG
CTTCAACACCGCCTCCACCACCACCGCCGGAGCCGACATTTTATGAAAAT
AGTTTGGAAAGTGTTTTGGAGATGATGAACCATCTTGGGATTACTTATTT
CAACAACCCTCCGCCTGAGGACCCACCAACCTTCTACGAAGAGTTGATAG
ACCCCGTGGTCCATCTAGCTGCTCGAGTTGGTCGAGTtgtgtaaat
Run BLAST on NCBI

protein sequence of TCONS_00010255-protein

>TCONS_00010255-protein ID=TCONS_00010255-protein|Name=TCONS_00010255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
YSFLRYKSQKSNMENVEPGSRRYVRRSRLQNSFVKTRSEARPRNNRTITP
VVTPNVQIVSSNTQSASLQNNAVAVTSTPRRTANEKTVEEVFTLRDGLMF
LMTAVLVSSLAYAFTFHTEWFQWPFQSYPPVEEKIYEPTPSFYESLWQSV
MDKLVNVMDIVAEKSGASTPPPPPPPEPTFYENSLESVLEMMNHLGITYF
NNPPPEDPPTFYEELIDPVVHLAARVGRVV
Run BLAST on NCBI

transcript from alignment at sc0000104:390328..394139+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010255 ID=TCONS_00010255|Name=TCONS_00010255|organism=Clytia hemisphaerica|type=transcript|length=3812bp|location=Sequence derived from alignment at sc0000104:390328..394139+ (Clytia hemisphaerica)
CTATTCTTTTCTACGTTACAAATCACAGAAGTCAAATATGGAGGTACGCT
TATTTTATATTGGCCGGAGGAAACATTCAACTTTTAAAGAAATGCAATAT
CATTTTGTGTTCGCTAGCATTTGCTTTCACTCTTTCTAAATAGgcgtttt
tttacaagaacatccaaaatttttgaagccttaggatgttcttaactttt
tgagtttcaatcctaaaaatgttctcaacatattcttattttcaccattc
tcTGGGCATTTTCAcctattttcttaagaaattggcaaGGGGGAGGAGTG
TCAAATattttaatacttttttgtgtGTACGTACTATGGGATACAAATAT
GGAAATTTCTTACAAATTCTCTTGGGTTCAAAATATATAAGGACGTCACT
TTTACATCTCAATTCATTGGTTTCAGAATGTTGAACCAGGTTCAAGGAGA
TACGTCCGAAGATCAAGgttacaaaattcttttgttaaaactcGCTCCGA
GGCCCGCCCTCGCAATAATCGAACAATCACACCTGTCGTTACGCCCAATG
TACAAATTGTATCATCCAACACCCAGAGTGCGTCCCTACAAAATAATGCC
GTTGCTGTTACAAGTACACCGTAAGTAATGTCTACAAATATTTTCATAAG
ACGTTCTTCAGTTCCCATTCATGTTTATTTCTcattcacattttttttat
aaagaaccttaactttgctctgagccttgagttccttatttttacagaga
atttaagcctcaaagttccttatcgagttccttatttacatagctgctaa
gtttggataaccacctcttactgttccttaaaacttgttttcttattcgc
agcctgagcagttcctaaacaattccttattttttggaccattttcagcc
tcgagttccttataaacgtgttccttatataaaaaaaaacgtgtactaca
cattaaataaaattttgtgaCACAATTATATGCTCGGTAATGCTTATTTG
AATTCCCtgaatttgtactagtaatcgtatggtttggagtgcaattaacg
attaatcacgagtaacaaaggagaaaatattgTTACGAGTGAtcaatcgt
taattgcacgacaaaacatacgattccgaggtaatcgtcagtaaataatc
attacgagtaaatcatagttttgaaaaagaatcttattctaacttttata
tttttgcaaacattcgaaaacctcctttttttttttgtttaaaaagaaaa
cattgcagtgtaatttttctttgttttcaattaaaagaagctattgtaac
gtaaaatttctttgttcttttttatattgaagaaaaaaatgtctttgttt
tttattatatagtaaaaaaaagtctctggagagaaaagaataagaggaca
aaagtgtccccccgccgaagagtgcaaaaagtggtaatagtgcaattaac
gattaattgcactcctctaaaccaatcagattcgagtaattttgcacggc
tgacgattaccaGCGTTATAGTAATCCTTTTGGGTTTCTATTTCCTAAAT
TGGGTGTTGGCATTGAAGAAGAGGGGCTAGCTACGGAATGAAGTTCCCCC
AATATGGGTATATAGATTTTtgtctaaaataaaaaatttaaattatgaAC
GTTTAAATCGAGAGAAAAAAGGCAAAGAATGAAGTAGAAGcattaaaatt
attattttatgaaCTACCTTATCATACTTCAGGAGACGTACGGCGAATGA
GAAAACGGTAGAAGAGGTATTCACACTACGCGATGGATTAATGTTTTTAA
TGACGGCCGTGCTTGTGTCATCATTAGCGTACGCCTTTACGTTTCACACT
GAATGGTAAGACTATTCATTTGATAATTAGCGAATTAAACAAAGAGAgtt
taaatgttttatttttagactaagtgtttccgtttcatatcggAGAAATA
TTTcatgtctgcctattgttatattatactgatataagcaaaaaatgttt
ttcttttcctctttctgaccaatctaaTGTGAAAAGCTTGTgagttaaaa
ttgatgagtaagcaaacgatatcactcttatttaaaagttttaaatccTT
CAAAGTTTTCTTAAATGAACTTTTTGGTTAAGTACTGGTATGCTTAAAAA
AGGAAAACGAAATCAACCATTTCTTAACTTCTATGCAGTGGCCCGTGGCC
TTAGTCGTAAATCTAGGTCATAAAATGACTACATTGAGATTTAAACAAAA
GAGAAGACCTACTAAAAAGATCTCTAAAACAGGAAGGTACCGTTTTCccc
caaaaaaatttgatgtcttCAATGTGCAACCCAGGAGGCGAGGCAGTTAT
TTAGAACCTTTTCGATATTCCTGGACATCTTCAAACccttatgtgttttt
ttttcctgAAAGGCTCTACTGTTTtcacattttatattttattttaaggt
TTCAGTGGCCGTTCCAGTCATATCCACCTGTTGAAGAAAAGATTTATGAG
CCAACGCCCTCATTTTACGAATCCTTATGGCAGAGCGTTATGGATAAATT
AGTAAATGTGATGGATATTGTAGCCGAAAAATCCGGGTAAGAATCTCTCC
TCGTTTCTTTGTTACTAGTAAGTTTATATATNAATCCGGGTAAGAATCTC
TCCTCGTTTCTTTGTTACTAGTAAGTTTATATATAGGGACGGAGATGGTT
AGTTAGGTTAtccttttgcttttgtttcGTTGGAAAGCTTATTCTGCAGC
GCCCGCGCAGCTACAAAAAATATCAGAACCTTCTCGAATCTAAATACAGG
CAAGAGATGTAGCGAAAAGTGACCTTTCTTTCTTTGAATTTTATAAACGA
TATTCACTTTCTTTTTCAGCGCTTCAACACCGCCTCCACCACCACCGCCG
GAGCCGACATTTTATGAAAATAGTTTGGAAAGTGTTTTGGAGATGATGAA
CCATCTTGGGTAAGATAGTCAATCTTAATCACTACTGTAGACCGTCTCAA
GCATTTCTTCTTTTACTGCTTGATTCTTTTGAAGTACCCGTACTTTCCAG
ATTAAAAAAAAGgtctaccttattacacgaatattactaggcaagtattc
aacggccttgaaattaacacgcaaaaaattaaaaataattttattacgGC
TGGTTTTAATGAAAGGGGTTTTAATCAACACGAAATTTCTTAATTCGTGT
TAAAATTACACGTGTCACTTATTTTCGTGTAATAGGTAATTGCGGGGTAA
TTGAGACTGAGTAGTTtaattttcctttcaaaattcaTGCTATAGTGTAG
AGAATTTTGATGAATAACGATTTTTGAACTATCATGCCCTATGTTCTTGT
ATTGGATTATCCCTATAACGATACTAAAAGTTCCTTGCTTTGACAGCAAA
atttttattcatgatatgcaccattgcgatgtcttctgacattacaccac
ggacccaatagctgattggttgtaagtgacgcaaaatcaatcagtcaata
cgtcactttcaacaaATTAGCTTTTGgatccgtggaagacattgtaatga
ttcatatcatgaataataGGGGTATAAATTAGTAGTAGGCACCCGGGCTT
TACAAACTAGTCTAAAACCATAATGAAatctaaatatcaaaattaaGTCA
TGGTCGTGTGTTTTCTAGACTAAACTAATTACATGAACATCTCTTTATTT
GTAGGATTACTTATTTCAACAACCCTCCGCCTGAGGACCCACCAACCTTC
TACGAAGAGTTGATAGACCCCGTGGTCCATCTAGCTGCTCGAGTTGGTCG
AGTtgtgtaaat

Coding sequence (CDS) from alignment at sc0000104:390328..394139+

>TCONS_00010255 ID=TCONS_00010255|Name=TCONS_00010255|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000104:390328..394139+ (Clytia hemisphaerica)
TATTCTTTTCTACGTTACAAATCACAGAAGTCAAATATGGAGAATGTTGA
ACCAGGTTCAAGGAGATACGTCCGAAGATCAAGgttacaaaattcttttg
ttaaaactcGCTCCGAGGCCCGCCCTCGCAATAATCGAACAATCACACCT
GTCGTTACGCCCAATGTACAAATTGTATCATCCAACACCCAGAGTGCGTC
CCTACAAAATAATGCCGTTGCTGTTACAAGTACACCGAGACGTACGGCGA
ATGAGAAAACGGTAGAAGAGGTATTCACACTACGCGATGGATTAATGTTT
TTAATGACGGCCGTGCTTGTGTCATCATTAGCGTACGCCTTTACGTTTCA
CACTGAATGgtTTCAGTGGCCGTTCCAGTCATATCCACCTGTTGAAGAAA
AGATTTATGAGCCAACGCCCTCATTTTACGAATCCTTATGGCAGAGCGTT
ATGGATAAATTAGTAAATGTGATGGATATTGTAGCCGAAAAATCCGGCGC
TTCAACACCGCCTCCACCACCACCGCCGGAGCCGACATTTTATGAAAATA
GTTTGGAAAGTGTTTTGGAGATGATGAACCATCTTGGGATTACTTATTTC
AACAACCCTCCGCCTGAGGACCCACCAACCTTCTACGAAGAGTTGATAGA
CCCCGTGGTCCATCTAGCTGCTCGAGTTGGTCGAGTtgtgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005770XLOC_005770Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010255-proteinTCONS_00010255-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010255-exon-sc0000104-1491911889:390328..390370TCONS_00010255-exon-sc0000104-1491911889:390328..390370Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1510915933:390328..390370TCONS_00010255-exon-sc0000104-1510915933:390328..390370Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1575043694:390328..390370TCONS_00010255-exon-sc0000104-1575043694:390328..390370Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1491911889:390754..390947TCONS_00010255-exon-sc0000104-1491911889:390754..390947Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1510915933:390754..390947TCONS_00010255-exon-sc0000104-1510915933:390754..390947Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1575043694:390754..390947TCONS_00010255-exon-sc0000104-1575043694:390754..390947Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1491911889:392060..392182TCONS_00010255-exon-sc0000104-1491911889:392060..392182Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1510915933:392060..392182TCONS_00010255-exon-sc0000104-1510915933:392060..392182Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1575043694:392060..392182TCONS_00010255-exon-sc0000104-1575043694:392060..392182Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1491911889:392776..392913TCONS_00010255-exon-sc0000104-1491911889:392776..392913Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1510915933:392776..392913TCONS_00010255-exon-sc0000104-1510915933:392776..392913Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1575043694:392776..392913TCONS_00010255-exon-sc0000104-1575043694:392776..392913Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1491911889:393197..393286TCONS_00010255-exon-sc0000104-1491911889:393197..393286Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1510915933:393197..393286TCONS_00010255-exon-sc0000104-1510915933:393197..393286Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1575043694:393197..393286TCONS_00010255-exon-sc0000104-1575043694:393197..393286Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1491911889:394032..394139TCONS_00010255-exon-sc0000104-1491911889:394032..394139Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1510915933:394032..394139TCONS_00010255-exon-sc0000104-1510915933:394032..394139Clytia hemisphaericaexon
TCONS_00010255-exon-sc0000104-1575043694:394032..394139TCONS_00010255-exon-sc0000104-1575043694:394032..394139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:390328..394139 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.322791	0	0	0	0	0	0.0760401	0	0.0970348	0	0	0	0	0	0	0	0	0	0	0	0	0.0782154	0.209416	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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