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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010256 ID=TCONS_00010256|Name=TCONS_00010256|organism=Clytia hemisphaerica|type=transcript|length=1737bp
TTTTGGAtttaaaaatataactttttttgttCTCACTTTTCCAAATTATT
ATGGGTAtaatatttataaaataaatcaaacttaaaaatatataaactaa
aaattattttttttttaagttgattTTTGAGGCCATGTAGTGAAATGCAT
GGCTCGGACACAATAGAGCACAGATTTTTTCGCAGGtgttttaaaaatga
gaaaaatatttacaaatgaAATTCATAAAGCTAAATAGGCCATCgacaaa
agttataaaaaatctTACCTGATGTCAAAAGATATTAACTACTGTaacaa
attaaaattgatttctcgtaattcttttttttttttgtataatgTTAATT
ATAGTAAGTAAGATACACTTAACCATTACACTATGAATTGAGAAAAGttt
aaaagcattttaaaacTATTGTCTTGTATCCTTGTAGTAATACAATGAGC
TTTACCGTATGATATAGGCAAAGAGTTTCTTGCACTTCCATAGGGAAAGC
AACGAGTTTCGAAAAAAGGATATCCACAAAATCAGTTTTAGTGTtactaa
aatatcaaaacaaaacNCGAGTTTCGAAAAAAGTATATCCACAAAGTCAG
TTTTAGTCGtactaaaatatcaaaacaaaacaacgaatattaaaaaatga
ttttaaagctttgttaaatcaataaaaaggtccctatatacaaaaaaatc
cttttgttttcatttttcttcgtCACTCAAGTTTTTTATCTCCTCTTCGG
ATAATTATCAGGGCTTTGTTCAACCGAGGGAGAGCTGGGCGAATAGTCTG
GAGGTGACGCATCAGTTGGTGAATAAGCCATCCTGTCTGGTGAATAGGTT
GGTGTTCCAGGGCTGTAATCTGGTTGTAGCGGGCTGTAGTTCATTGAACC
TGGCGAAGCTTGATCGGAAGGTGAGCTTGGCGAGTAAGTGGGTGATGATG
GTGAATATTTTGGACTGCTTGGCGAGTAGCGTGGTGACGTTGGCGAGTAA
GCTGGGCTTGTTGGCGAGTAGGTTGGAGAAGTTGGTGAGTATTTTGGTGA
TGTTGGCGAGTAAGCAGGACTGGTCGGTGAGTATTTTGGCGACGATGGCG
AGTAGGATGGTGATGAAGGGCTGTAACTTGGCGAGGTTGGCGAGTAGCTT
GGAGATGTGGGCGAATAGCTCGGACTCGTAGGGCTGTAGCTCGGTGAAGT
CGGACTGTAACTTGGACTTGTTGGTGAATAAGAAGGTGAAGTAGGCGAGT
AAGATGGTGAAGTTGGCGAGTATCCAGGGGATGTAGGACTGTAGCTAGGT
GATGTTGGGCTATATCCTGGTGAAGTTGGACTATAACTTGGTGAGGTTGG
TGAGTAGCCAGGTGAAGCAGGGCTGTAACCAGGTGATGCGGGTGACATTC
CAGGTGAGGCTGGGTTGAAGGCTGGAGATGCAGGGGAGTAACTTGGACTC
ATACCAGTTCTAGCTGGACTAGGAATGTATGGTGAAGCATCAGGAGATCC
TGGTGACATAGGAGCTTGAGGACTCCATCCAGGACTGAAACCACCAGCAG
GACTGAAACCACTGGCTTCTGAACCAGCTGATGGTGAAAATGCGGCAGCT
CCAGGAGTCATGCCTGATCCGAGACCAGGTGACCATGCTTCTCCGTATCC
AGGAGTGGCACCTTGGTTCCAGGGTGTCATTTGTGGGGACATTGCACTGG
ATGGAGATGCAGCAGAACCGAAGAACATACCACCTCC Run BLAST on NCBI transcript from alignment at sc0000104:396697..398790+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010256 ID=TCONS_00010256|Name=TCONS_00010256|organism=Clytia hemisphaerica|type=transcript|length=2094bp|location=Sequence derived from alignment at sc0000104:396697..398790+ (Clytia hemisphaerica)
TTTTGGAtttaaaaatataactttttttgttCTCACTTTTCCAAATTATT
ATGGGTAtaatatttataaaataaatcaaacttaaaaatatataaactaa
aaattattttttttttaagttgattTTTGAGGCCATGTAGTGAAATGCAT
GGCTCGGACACAATAGAGCACAGATTTTTTCGCAGGtgttttaaaaatga
gaaaaatatttacaaatgaAATTCATAAAGCTAAATAGGCCATCgacaaa
agttataaaaaatctTACCTGATGTCAAAAGATATTAACTACTGTaacaa
attaaaattgatttctcgtaattcttttttttttttgtataatgTTAATT
ATAGTAAGTAAGATACACTTAACCATTACACTATGAATTGAGAAAAGttt
aaaagcattttaaaacTATTGTCTTGTATCCTTGTAGTAATACAATGAGC
TTTACCGTATGATATAGGCAAAGAGTTTCTTGCACTTCCATAGGGAAAGC
AACGAGTTTCGAAAAAAGGATATCCACAAAATCAGTTTTAGTGTtactaa
aatatcaaaacaaaacNCGAGTTTCGAAAAAAGTATATCCACAAAGTCAG
TTTTAGTCGtactaaaatatcaaaacaaaacaacgaatattaaaaaatga
ttttaaagctttgttaaatcaataaaaaggtccctatatacaaaaaaatc
cttttgttttcatttttcttcgtCACTCAAGTTTTTTATCTCCTCTTCGG
ATAATTATCAGGGCTTTGTTCAACCGAGGGAGAGCTGGGCGAATAGTCTG
GAGGTGACGCATCAGTTGGTGAATAAGCCATCCTGTCTGGTGAATAGGTT
GGTGTTCCAGGGCTGTAATCTGGTTGTAGCGGGCTGTAGTTCATTGAACC
TGGCGAAGCTTGATCGGAAGGTGAGCTTGGCGAGTAAGTGGGTGATGATG
GTGAATATTTTGGACTGCTTGGCGAGTAGCGTGGTGACGTTGGCGAGTAA
GCTGGGCTTGTTGGCGAGTAGGTTGGAGAAGTTGGTGAGTATTTTGGTGA
TGTTGGCGAGTAAGCAGGACTGGTCGGTGAGTATTTTGGCGACGATGGCG
AGTAGGATGGTGATGAAGGGCTGTAACTTGGCGAGGTTGGCGAGTACTTT
GGACTAGTTGGCGAGTAGCTTGGAGATGACGGCGAGTAAGATGGAGACTG
GGGAGAATATGCTGGACTTGTTGGAGAATATTGTGGTGAAGAAGGACTGT
AGGAGGGCGAAGTTGGCGAGTAGCTTGGAGAAGTTGGTGAGTATTTGGGA
CTCGTTGGCGAGTAAGATGGACTTGTTGGCGAGTATGATGGCGAAGTCGG
CGAGTAACTCGGTGATGTCGGAGAATAACTCGGAGATGTTGGCGAGTAGC
TTGGACTTGTCGGACTGTAGCTCGGTGATGTAGGACTGTAACTTGGACTC
GTCGGAGAATAAGATGGTGAAGTTGGTGAGTAGGATGGTGAGGTTGGCGA
GTAGCTTGGAGATGTGGGCGAATAGCTCGGACTCGTAGGGCTGTAGCTCG
GTGAAGTCGGACTGTAACTTGGACTTGTTGGTGAATAAGAAGGTGAAGTA
GGCGAGTAAGATGGTGAAGTTGGCGAGTATCCAGGGGATGTAGGACTGTA
GCTAGGTGATGTTGGGCTATATCCTGGTGAAGTTGGACTATAACTTGGTG
AGGTTGGTGAGTAGCCAGGTGAAGCAGGGCTGTAACCAGGTGATGCGGGT
GACATTCCAGGTGAGGCTGGGTTGAAGGCTGGAGATGCAGGGGAGTAACT
TGGACTCATACCAGTTCTAGCTGGACTAGGAATGTATGGTGAAGCATCAG
GAGATCCTGGTGACATAGGAGCTTGAGGACTCCATCCAGGACTGAAACCA
CCAGCAGGACTGAAACCACTGGCTTCTGAACCAGCTGATGGTGAAAATGC
GGCAGCTCCAGGAGTCATGCCTGATCCGAGACCAGGTGACCATGCTTCTC
CGTATCCAGGAGTGGCACCTTGGTTCCAGGGTGTCATTTGTGGGGACATT
GCACTGGATGGAGATGCAGCAGAACCGAAGAACATACCACCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010256-exon-sc0000104-1491911889:396697..397831 | TCONS_00010256-exon-sc0000104-1491911889:396697..397831 | Clytia hemisphaerica | exon |
| TCONS_00010256-exon-sc0000104-1510915933:396697..397831 | TCONS_00010256-exon-sc0000104-1510915933:396697..397831 | Clytia hemisphaerica | exon |
| TCONS_00010256-exon-sc0000104-1575043694:396697..397831 | TCONS_00010256-exon-sc0000104-1575043694:396697..397831 | Clytia hemisphaerica | exon |
| TCONS_00010256-exon-sc0000104-1491911889:398189..398790 | TCONS_00010256-exon-sc0000104-1491911889:398189..398790 | Clytia hemisphaerica | exon |
| TCONS_00010256-exon-sc0000104-1510915933:398189..398790 | TCONS_00010256-exon-sc0000104-1510915933:398189..398790 | Clytia hemisphaerica | exon |
| TCONS_00010256-exon-sc0000104-1575043694:398189..398790 | TCONS_00010256-exon-sc0000104-1575043694:398189..398790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:396697..398790 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000684 | RNA_pol_II_repeat_euk |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005665 | DNA-directed RNA polymerase II, core complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006366 | transcription from RNA polymerase II promoter |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006366 |
transcription from RNA polymerase II promoter |
| cellular_component |
GO:0005665 |
DNA-directed RNA polymerase II, core complex |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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