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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010287 ID=TCONS_00010287|Name=TCONS_00010287|organism=Clytia hemisphaerica|type=transcript|length=1763bp
AGTCATCTTttgattcaatttcaattttgttttgttttgcacattgttaa
tttttattattaCTTTTAAATGGAATCTTGATAAATATTCtgtattaaaa
tttcaaactgaATGATCTAAGAAATaacaatttaaaatatattCCTTGCT
TTTTCAGACATACTGAAATTCCTCTTAACCAATGGAGAGAGAATGATTAT
GAGCCAGTATCAAACAACTCAACTGCCAAACGACAAGGAGAGGATGATCC
TAATCACGCCATTTACTCTGAATTGGGTCCTGGTGGTCGTGTTGGGCCCA
AGCCGACACCGGCCTCNTTCTGAATTGGGTCCTGGTGGCCGTGTTGGGCC
CAAGCCGACACCGGCCTCATCAGATTACGCTGAAGTGAAGGTAGATGATT
ATGGTATGCCAATTACCGGTGAAACTAGGGAACCGGCTGAAACAACACTT
TACGACCAAGTCAAGAGAAActctgatgattttgatgatgGAGTTATTGT
CTAGTTGtgaaatgttgttttgataTAAAAACTTGTACTAAGTTTTGTAC
TTGCATTATTGGTTGGCTTCCAAACTAATGGATGGTTGTTCGCACTTTTG
CATTGTTCCGTGGTCATCTCCGGGGACAAATGTCAATGGTTTGAATGAAA
CATATGCACGACTTTGTGGGATCGGTTCATTGTTGTAAAAAGACTTACTG
CTGTTGTTTTTCGCAGATTCTCACATCTTTCCATAAAAACATTATGAAAC
TTCCTTAGAAAGGTTATTCTGTTAGAAACAGCAATGTTGTGAAATGTTAG
Tattaattttagagaaaaaaaggattttaagttattattttttttgttca
attagTTTGATATGTGGACTAAAATATTTTATATGGATTTTATGAAAACT
GATGTTTATAACCAAAGCATAATTTCAAGTGTTTGAGTTCAAGGACTGAC
TAAGGAatcctttttaacttttttcaaactattgatttttttaattaaaa
tgtaTAAGACTTTTCTTAATGAACAAATTTGTGACCAACAGATGACTTTT
AAATGCCTGATTTGCATTGACTTTGATTGTcagtttgttgtttttgaata
CAATATGTTTAGACACGCATTTATGGTGGCCCATGagtatcaaatttatt
ttagtGATACTGATGGGCCACCATATATAACATAAACTGgttgataatta
ttttttataacGGTGTTTGTACTAAAGTGCTTCTCTTTTTTCTACTATAC
ATAGTTTGCACTatactgttttattttttaaatatttaaaactaAAGTTA
TTTTTTGTGGTACTTAGTTTTAGTTTTGAGGGAGTTGATTGTTATTCCTA
AGTTTTCTTACAAAGTAACTTCTCTCGGGATTTTAAATCTCAGTCTTTCT
GACATTTCGAGTTTTCTTAGAAGTTTTCCTCATCGCAAAATATTTagttt
gagcctgaaattaacTACTTATACATATATGTTAAATAAAACGTGTATCA
CTTGATCAtgaattttttaatcaattattttttattataaatgatgattt
tcatattttgttgtacagaattaaattttgtttttttttgcttggccaat
ttattttcaacacttttaaaATATGTTATACTGTTTATGACCATGTTTGT
aattaattttgttttcttccaaaaaatgatgatttttttcgtttgtttct
aattcaaatatatattttataatttaacatttaaaaattattttttcatc
aatttgatTTACC Run BLAST on NCBI protein sequence of TCONS_00010287-protein >TCONS_00010287-protein ID=TCONS_00010287-protein|Name=TCONS_00010287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MIMSQYQTTQLPNDKERMILITPFTLNWVLVVVLGPSRHRPXSELGPGGR
VGPKPTPASSDYAEVKVDDYGMPITGETREPAETTLYDQVKRNSDDFDDG
VIV Run BLAST on NCBI transcript from alignment at sc0000104:76355..78445- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010287 ID=TCONS_00010287|Name=TCONS_00010287|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at sc0000104:76355..78445- (Clytia hemisphaerica)
AGTCATCTTTTGATTCAATTTCAATTTTGTTTTGTTTTGCACATTGTTAA
TTTTTATTATTACTTTTAAATGGAATCTTGATAAATATTCTGTATTAAAA
TTTCAAACTGAATGATCTAAGAAATAACAATTTAAAATATATTCCTTGCT
TTTTCAGACATACTGAAATTCCTCTTAACCAATGGAGAGAGGTATGTTTA
TGTGTTGTTTTCTTTTCATAATGACACTTCAGTACTCTAAAGAAGGATAT
TAAGTTTAAGATTTCTGCAGGAAATTCTAACGCAGCCCCAAAAACATTAT
AAGCATTTCAAAGTGACAGGCACATCAGCCCAGCCCCATCCATAATTATG
AACTGACTAGCTTGTAAATTTTAACTTAGCTGGATGTACATCCAGGTAGT
TAAGCCTAGAAAAGATCACTTTTTTTTTCATATTCACAGCCTTTATGAAC
CAGAAATTATCAATCCTAAATTTATGTATTATCAACAGATAGACTAATCA
AGTTGCTTCTCTTTTTCAGAATGATTATGAGCCAGTATCAAACAACTCAA
CTGCCAAACGACAAGGAGAGGATGATCCTAATCACGCCATTTACTCTGAA
TTGGGTCCTGGTGGTCGTGTTGGGCCCAAGCCGACACCGGCCTCNTTCTG
AATTGGGTCCTGGTGGCCGTGTTGGGCCCAAGCCGACACCGGCCTCATCA
GATTACGCTGAAGTGAAGGTAGATGATTATGGTATGCCAATTACCGGTGA
AACTAGGGAACCGGCTGAAACAACACTTTACGACCAAGTCAAGAGAAACT
CTGATGATTTTGATGATGGAGTTATTGTCTAGTTGTGAAATGTTGTTTTG
ATATAAAAACTTGTACTAAGTTTTGTACTTGCATTATTGGTTGGCTTCCA
AACTAATGGATGGTTGTTCGCACTTTTGCATTGTTCCGTGGTCATCTCCG
GGGACAAATGTCAATGGTTTGAATGAAACATATGCACGACTTTGTGGGAT
CGGTTCATTGTTGTAAAAAGACTTACTGCTGTTGTTTTTCGCAGATTCTC
ACATCTTTCCATAAAAACATTATGAAACTTCCTTAGAAAGGTTATTCTGT
TAGAAACAGCAATGTTGTGAAATGTTAGTATTAATTTTAGAGAAAAAAAG
GATTTTAAGTTATTATTTTTTTTGTTCAATTAGTTTGATATGTGGACTAA
AATATTTTATATGGATTTTATGAAAACTGATGTTTATAACCAAAGCATAA
TTTCAAGTGTTTGAGTTCAAGGACTGACTAAGGAATCCTTTTTAACTTTT
TTCAAACTATTGATTTTTTTAATTAAAATGTATAAGACTTTTCTTAATGA
ACAAATTTGTGACCAACAGATGACTTTTAAATGCCTGATTTGCATTGACT
TTGATTGTCAGTTTGTTGTTTTTGAATACAATATGTTTAGACACGCATTT
ATGGTGGCCCATGAGTATCAAATTTATTTTAGTGATACTGATGGGCCACC
ATATATAACATAAACTGGTTGATAATTATTTTTTATAACGGTGTTTGTAC
TAAAGTGCTTCTCTTTTTTCTACTATACATAGTTTGCACTATACTGTTTT
ATTTTTTAAATATTTAAAACTAAAGTTATTTTTTGTGGTACTTAGTTTTA
GTTTTGAGGGAGTTGATTGTTATTCCTAAGTTTTCTTACAAAGTAACTTC
TCTCGGGATTTTAAATCTCAGTCTTTCTGACATTTCGAGTTTTCTTAGAA
GTTTTCCTCATCGCAAAATATTTAGTTTGAGCCTGAAATTAACTACTTAT
ACATATATGTTAAATAAAACGTGTATCACTTGATCATGAATTTTTTAATC
AATTATTTTTTATTATAAATGATGATTTTCATATTTTGTTGTACAGAATT
AAATTTTGTTTTTTTTTGCTTGGCCAATTTATTTTCAACACTTTTAAAAT
ATGTTATACTGTTTATGACCATGTTTGTAATTAATTTTGTTTTCTTCCAA
AAAATGATGATTTTTTTCGTTTGTTTCTAATTCAAATATATATTTTATAA
TTTAACATTTAAAAATTATTTTTTCATCAATTTGATTTACC Coding sequence (CDS) from alignment at sc0000104:76355..78445- >TCONS_00010287 ID=TCONS_00010287|Name=TCONS_00010287|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000104:76355..78445- (Clytia hemisphaerica)
ATGATTATGAGCCAGTATCAAACAACTCAACTGCCAAACGACAAGGAGAG
GATGATCCTAATCACGCCATTTACTCTGAATTGGGTCCTGGTGGTCGTGT
TGGGCCCAAGCCGACACCGGCCTCNTTCTGAATTGGGTCCTGGTGGCCGT
GTTGGGCCCAAGCCGACACCGGCCTCATCAGATTACGCTGAAGTGAAGGT
AGATGATTATGGTATGCCAATTACCGGTGAAACTAGGGAACCGGCTGAAA
CAACACTTTACGACCAAGTCAAGAGAAACTCTGATGATTTTGATGATGGA
GTTATTGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010287-exon-sc0000104-1575043694:78255..78445 | TCONS_00010287-exon-sc0000104-1575043694:78255..78445 | Clytia hemisphaerica | exon |
| TCONS_00010287-exon-sc0000104-1575043694:76355..77926 | TCONS_00010287-exon-sc0000104-1575043694:76355..77926 | Clytia hemisphaerica | exon |
| TCONS_00010287-exon-sc0000104-1510915933:78255..78445 | TCONS_00010287-exon-sc0000104-1510915933:78255..78445 | Clytia hemisphaerica | exon |
| TCONS_00010287-exon-sc0000104-1510915933:76355..77926 | TCONS_00010287-exon-sc0000104-1510915933:76355..77926 | Clytia hemisphaerica | exon |
| TCONS_00010287-exon-sc0000104-1491911889:78255..78445 | TCONS_00010287-exon-sc0000104-1491911889:78255..78445 | Clytia hemisphaerica | exon |
| TCONS_00010287-exon-sc0000104-1491911889:76355..77926 | TCONS_00010287-exon-sc0000104-1491911889:76355..77926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:76355..78445 - |
Blast
The following BLAST results are available for this feature:
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