TCONS_00010288 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010288
Unique Name	TCONS_00010288
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1322

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000104:78565..82901-
coding sequence from alignment at sc0000104:78565..82901-

transcript sequence

>TCONS_00010288 ID=TCONS_00010288|Name=TCONS_00010288|organism=Clytia hemisphaerica|type=transcript|length=1322bp
tttttagaaaaaaaacaaaaatacaaaaaagaaattcaagaatgATACTA
GTAACTCTGCTATTGATAGGAAGCCTGTTTCATCAAGCTCATTGTGTTAG
TTCTGTAAAACCAGCGAATGAAGCAACATCAATTACAGTACAGAAAGGGG
ATGATGCTCTATTTCAATGGAACATTGTACTCGAAAATGGTGACCAAGAT
GTtggtttaaaacttttaaatggAACAACAGAATTATGGACTCAGCAAAC
GGGTAAAGTCAGTGATGCAGGAAAAGAACTTTTGCAAGAAAGATTAAAAG
TAGAAAAATCTGTAACAAATTTAAAAGCTACAATCAGAAACGTGGATTTC
AATGATTCTTCAATTGAATTGAAACTAACAGGAGCCATTTCTGACAGCGG
CTTCAATAAATTAAGTGATGTTGATTCTTCTATTGCATTGAATGTCCAAG
GTGGACCAGTCTATTGTGGTGCACAGCTTAAATCTAGTTATAATATCGGA
CTCAATGCCAGACGAAAATATGAATTATGCATTGAAAGTAACCCAGCACC
AGAAATAACTTACAAATTTCCGAGTGATGTAGAAGAGGGTGTCAAAGGAA
TTGTAACAGGACCAAGTTGGGACCACCAATACACAGCAAGCTTTGAGCTT
CCATCTGTAACTGCAGAAAACTGTGGCAAGGAGATGTCATACACAGTTAC
AACACCCAATTTACAAGGAAGTACACCTTTAACAGGAAAAGCAACTTTAA
CATTGACAGACCTACCATTAGATGTCACCATTTCCACCTTTTCATACGAG
TATGGGATCCCAACAGTAATGTGGAGAAAAATTGAAGCTGGATTATGCAG
TGACAATATTGTTTATTATATGGAAGTCAGTAACCAAACAGCCATTATAT
CCAAAGGACCTTTGAATGGAACCTCTCAAGTAGTAgatgagttaggtaat
gaaccAAAAGAAGTTGTTATGTGGGCTGAATATGACGGTCCAACTGGAAA
GAAGACTGGGCAACGAGTGACATTTGGATTTACCAAGACTACAACTACGA
CTACCACAACAACCACCACAGTGAAACCTGCTGTGCCAGTCGCCAATGAT
CCTGCCAAAGACGATGACAATTTGGGACTAATTGTTGGCGGTGCTGTTGG
CGGTGTAATTGTTCTTGCAGTCATTATCATCATTGTTGTGATTCTAATGC
GTAGAAAGAAAACAGCAAAACACGACTCCATTGATAACTCTACTAATGTT
AACGAAAATCCTAATGCTGAATTTAAACGCGGTGCACAAAAAGATGGGTA
AGAAAGAATGAGACAAATCAAG

Run BLAST on NCBI

protein sequence of TCONS_00010288-protein

>TCONS_00010288-protein ID=TCONS_00010288-protein|Name=TCONS_00010288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
FRKKTKIQKRNSRMILVTLLLIGSLFHQAHCVSSVKPANEATSITVQKGD
DALFQWNIVLENGDQDVGLKLLNGTTELWTQQTGKVSDAGKELLQERLKV
EKSVTNLKATIRNVDFNDSSIELKLTGAISDSGFNKLSDVDSSIALNVQG
GPVYCGAQLKSSYNIGLNARRKYELCIESNPAPEITYKFPSDVEEGVKGI
VTGPSWDHQYTASFELPSVTAENCGKEMSYTVTTPNLQGSTPLTGKATLT
LTDLPLDVTISTFSYEYGIPTVMWRKIEAGLCSDNIVYYMEVSNQTAIIS
KGPLNGTSQVVDELGNEPKEVVMWAEYDGPTGKKTGQRVTFGFTKTTTTT
TTTTTTVKPAVPVANDPAKDDDNLGLIVGGAVGGVIVLAVIIIIVVILMR
RKKTAKHDSIDNSTNVNENPNAEFKRGAQKDG

Run BLAST on NCBI

transcript from alignment at sc0000104:78565..82901-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010288 ID=TCONS_00010288|Name=TCONS_00010288|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000104:78565..82901- (Clytia hemisphaerica)
TTTTTAGAAAAAAAACAAAAATACAAAAAAGAAATTCAAGAATGATACTA
GTAACTCTGCTATTGATAGGAAGCCTGTTTCATCAAGGTGAGCCTGATTT
TGTGTTTTGATTTGTGCAGCTCATTAATTCTTCTAGTCTATTTTTCATAG
TTATACTTTTCTATAAGAACCCACTTGCTATGGGGCAATTAGCTGAATGA
TTTGTAAAAAATCTTAACAATGTTTTTTACTCTCTAGCTCATTGTGTTAG
TTCTGTAAAACCAGCGAATGAAGCAACATCAATTACAGTACAGAAAGGGG
ATGATGCTCTATTTCAATGGAACATTGTACTCGAAAATGGTGACCAAGAT
GTTGGTTTAAAACTTTTAAATGGAACAACAGAATTATGGACTCAGCAAAC
GGGTAAAGTCAGTGATGCAGGAAAAGAACTTTTGCAAGAAAGATTAAAAG
TAGAAAAATCTGTAACAAATTTAAAAGCTACAATCAGAAACGTGGATTTC
AATGATTCTTCAATTGAATTGAAACTAACAGGAGCCATTTCTGACAGCGG
CTTCAATAAATTAAGTGATGTTGATTCTTCTATTGCATTGAATGTCCAAG
GTAAGATGTTTTTTATGAGCCTAGAAATATTAAAAGATGTTTATTGTTTC
TTGTTTCTGTGTTTTGCATGCCTGCTTCCAGAAATTAATCGAATGGGGGA
TAAAATCCAAAGAAAACTGCGAGCTATGACAGGAGGGTAAAGACCCACTC
ATGTCACTCAAGTGAGTTACGGCATGTCCGAAGTAAAAGTGAAGCAGTTC
CACTCACTTTCAAAATGTCAAACATAGCTGAAAAGAAGCGCCTTATGATG
TAGATCAACGCGATAGCTGTTAGAAAAATTTAAGTTAAGGCTATAAGAAG
TTATATCCCAAAAACCTGTATTATGACGTCATAAACATTACGTAATATTA
CGTCATTAAACTAAAAATTTGAATATCTCGTGAACTAAAAGCCATATACA
CGTCAAATTTTAACCATAAATAGATATTGATGTAAGAAAAATTTTGAATT
GAAAATTTTTTGAAAAAAATGATGACGTCATTTTTTAGAGCCAAAAATCG
AAAATAGCTTAAAATCGCTGACGTCATCATTTTTCAGGAGATTTGAAAAT
TCTTACGTCTAGAGAATTACGATATATTTATTCTGTCAAAATTTCATATT
GATATCATAAACAGTTTTTGAGTTATTCAATTTTTTAATTTAATGATGTA
ATGTTACGTAATGTTTATGACGTCATAATACAAGTTTTTTGGCTATAACT
TCTTATAGCCTCAAGTTAAATTTTTCTAACAGCTATCACGTTGATCTACA
CCATAAGGCGCTTCTTTCCAGCTATAATTGACATTTTGAAAGTGAGTGGA
ACTGCTTCACTTTTACTTCGGACATGCCGTAACTCACTTGAGCATGCAAT
TCCCATTATAAGAGACAACCATCTCCTTTTCTTTGTATATTTTGATTTTC
GATTTATTTTGAGAGTTGTTTGAGAGTAATTCAAAAGCCTGTTATCTTAT
TTTATTTTTCTACATTTTATGGCTTCTCCGTAAATATGGTACTGTAAAAA
TGTCTTATTAATGGTTATTTCAAAGTCATGAAAATTTGAAAAGCAAAGCA
TAGCTCTTTCCCAAATAGCTTTCATTATTGTAATTGTCAGCTTTTAAAGT
TGATTATACCACAATTTTCTCGTATATTTTGAAAACGCACTCTTACCAAA
TTGGTAAAATATAAAATTGTACCTATAGTGTTATAATATAGATTTCCTGG
GCTGTACCAAAATTTTGGTAATTGAATTTGGTTACGGATCTTTTCCTATT
ATAGCAGCAGCTAATTTGGCATGAATTCTTTGTAATTTTTTTAATTTTGA
TGTTAATCTTTTGCATCCAAAATCACTAAAAGCAACTTGCAAAAGGTAAG
CATTATTCTTCTCAGTAAATTATACACGTTAATCAAATTATTGAGTTTTT
AAAAATGACGGATGACACATTCTGTACTCATAACTTCTGTTTTTGTTAGG
TGGACCAGTCTATTGTGGTGCACAGCTTAAATCTAGTTATAATATCGGAC
TCAATGCCAGACGAAAATATGAATTATGCATTGAAAGTAACCCAGCACCA
GAAATAACTTACAAATTTCCGAGTGATGTAGAAGAGGGTGTCAAAGGAAT
TGTAACAGGACCAAGTTGGGACCACCAATACACAGCAAGCTTTGAGCTTC
CATCTGTAACTGCAGAAAACTGTGGCAAGGAGATGTCATACACAGTTACA
ACACCCAATTTACAAGGAAGTACACCTTTAACAGGAAAAGCAACTTTAAC
ATTGACAGGTATGTATGTGATTTTTATCTCAGATTTTTCAGAGAAACTTG
TTAAATAAACTATTTTTTGTGGGACCAGCAGGAGTGGTTTCCTGAAAAAA
AGGAATGCATAGAAAATTGAGAGAATTCATGCGCAAAAACGAGTTTGCCA
TCGCCATAAACTTGAGTTTGCCATAAACTTGAACTGCAAAATTTAGAATT
ACAGATACCCTTCTTATATAATACAACTAATTTTACAATTCTACTTTATA
GACCTACCATTAGATGTCACCATTTCCACCTTTTCATACGAGTATGGGAT
CCCAACAGTAATGTGGAGAAAAATTGAAGCTGGATTATGCAGTGACAATA
TTGTTTATTATATGGAAGTCAGTAACCAAACAGCCATTATATCCAAAGGA
CCTTTGAATGGAACCTCTCAAGTAGTAGATGAGTTAGGTAATGAACCAAA
AGAAGTTGTTATGTGGGCTGAATATGACGGTCCAACTGGAAAGAAGACTG
GGCAACGAGTGACATTTGGATTTACCAAGACTACAACTACGACTACCACA
ACAACCACCACAGGTTAAGCATTGCTGATCTTAAACTTTCTAGCGCAATA
CACCTATCAACCTTGATGATTAGGGTTTGAGTTTAAGGAATGTCATCAAG
ATGTCTTTAAGGAAATCAATGCAATGACTTAAGACATTATGACGTTAATC
CTACCTGGTAACTCTAACCTTACTCTTTTTTCCTGCTTTAATAAGGGAGA
CAGGTGAATTGAAAGTTTCTACTAATAATCTGTAATAGGCTGGATGATAT
GCATTATTACTAGCACCCTGTGTTTCAGTTTGTTTAGCCGTTTAGCCCTT
ATACAACCCTACTATTTAGAGGTTTCAGAAGATAAAATAGATTACCAAGC
TTGTTTGCTTCTTTCCAGTTTCAAGTGTTTTATTACAGTGTTTATATATA
AGTTTGACAGTAGTACAAGAATTGAGTCATCATTTTTTAATGGACAAGCT
GGGAAGTACAGAGGTATGTAAATTTGCTAGTTTAGTTAGCCTTAATAAAG
CCTCCAATCAGCTTATTTTGAATAAATTTGATAAGGAAGATACCAGTATG
AGAAGTCCTTAATGATAGTTGAGATATTCCCTAATTCATTTTATATTTGG
AAATATGCTTTTGTCGTTTTTTGTTATTCTTCATTGCCCCTTTTGAATGT
GTGATGTTCATTCTTCTAGTGAAACCTGCTGTGCCAGTCGCCAATGATCC
TGCCAAAGACGATGACAATTTGGGACTAATTGTTGGCGGTGCTGTTGGCG
GTGTAATTGTTCTTGCAGTCATTATCATCATTGTTGTGATTCTAATGCGT
AGAAAGAAAAGTAAGCATGCATGTCCTTTAATTTCCTTGAACATGAACAC
GCATGAACATGGCTTGGATATGTTTTACAAGAGTTGATTGAAACTTTTTT
TTTAAATGTTTTTGGAGCAAGTAGCCCCTTTTGAATTTGGTGTGATATGT
GAAAAAAAAATATGATAGTTTTACAAAAGAAAAGAGAAAGTTTGCTCTAG
CCTTTGTTTTTTCTATTTGAATTTTCTAGCAGCAAAACACGACTCCATTG
ATAACTCTACTAATGTTAACGAAAATCCTAATGCTGAATTTAAACGCGGT
AAGAGTTTTTACTGAACTTACTGCACACAGACAATGAAATACTAACCATA
CCAAATCTAACAATGCACCATTTTATGCATGTCGACAGATTATTTTTGCA
CCAAAGTTTTACTATTCCACTATCACACACATTTGGGGCTTCTTGTCCCA
AAATTAACTTGCATGACAATCTTTTTTTTTAATTTTTATGGCATGGGTTT
GCATGAGGTATTATACAAAATAACCTGGATGTTTAACACTAATTGTCCCC
TTAGTATCACAGTTTTGTATTAATTTCTTCTCTTTTCTTTATTCAGGTGC
ACAAAAAGATGGGTAAGAAAGAATGAGACAAATCAAG

Coding sequence (CDS) from alignment at sc0000104:78565..82901-

>TCONS_00010288 ID=TCONS_00010288|Name=TCONS_00010288|organism=Clytia hemisphaerica|type=CDS|length=1299bp|location=Sequence derived from alignment at sc0000104:78565..82901- (Clytia hemisphaerica)
TTTAGAAAAAAAACAAAAATACAAAAAAGAAATTCAAGAATGATACTAGT
AACTCTGCTATTGATAGGAAGCCTGTTTCATCAAGCTCATTGTGTTAGTT
CTGTAAAACCAGCGAATGAAGCAACATCAATTACAGTACAGAAAGGGGAT
GATGCTCTATTTCAATGGAACATTGTACTCGAAAATGGTGACCAAGATGT
TGGTTTAAAACTTTTAAATGGAACAACAGAATTATGGACTCAGCAAACGG
GTAAAGTCAGTGATGCAGGAAAAGAACTTTTGCAAGAAAGATTAAAAGTA
GAAAAATCTGTAACAAATTTAAAAGCTACAATCAGAAACGTGGATTTCAA
TGATTCTTCAATTGAATTGAAACTAACAGGAGCCATTTCTGACAGCGGCT
TCAATAAATTAAGTGATGTTGATTCTTCTATTGCATTGAATGTCCAAGGT
GGACCAGTCTATTGTGGTGCACAGCTTAAATCTAGTTATAATATCGGACT
CAATGCCAGACGAAAATATGAATTATGCATTGAAAGTAACCCAGCACCAG
AAATAACTTACAAATTTCCGAGTGATGTAGAAGAGGGTGTCAAAGGAATT
GTAACAGGACCAAGTTGGGACCACCAATACACAGCAAGCTTTGAGCTTCC
ATCTGTAACTGCAGAAAACTGTGGCAAGGAGATGTCATACACAGTTACAA
CACCCAATTTACAAGGAAGTACACCTTTAACAGGAAAAGCAACTTTAACA
TTGACAGACCTACCATTAGATGTCACCATTTCCACCTTTTCATACGAGTA
TGGGATCCCAACAGTAATGTGGAGAAAAATTGAAGCTGGATTATGCAGTG
ACAATATTGTTTATTATATGGAAGTCAGTAACCAAACAGCCATTATATCC
AAAGGACCTTTGAATGGAACCTCTCAAGTAGTAGATGAGTTAGGTAATGA
ACCAAAAGAAGTTGTTATGTGGGCTGAATATGACGGTCCAACTGGAAAGA
AGACTGGGCAACGAGTGACATTTGGATTTACCAAGACTACAACTACGACT
ACCACAACAACCACCACAGTGAAACCTGCTGTGCCAGTCGCCAATGATCC
TGCCAAAGACGATGACAATTTGGGACTAATTGTTGGCGGTGCTGTTGGCG
GTGTAATTGTTCTTGCAGTCATTATCATCATTGTTGTGATTCTAATGCGT
AGAAAGAAAACAGCAAAACACGACTCCATTGATAACTCTACTAATGTTAA
CGAAAATCCTAATGCTGAATTTAAACGCGGTGCACAAAAAGATGGGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005778	XLOC_005778	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010288-protein	TCONS_00010288-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000104	supercontig	sc0000104:78565..82901 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.59919	7.20877	10.1518	10.9585	39.8453	31.4769	42.3637	47.647	70.4738	72.8089	35.1009	54.2493	52.958	60.1087	40.8815	41.4662	48.5475	62.8176	49.6647	63.5892	59.3258	57.806	27.3329	30.8751	43.8165	39.3278	111.844	100.403	82.1206	88.5365

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00010288 vs. Swiss-Prot (Human)

BLAST of TCONS_00010288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00010288 (transcript) - C. hemisphaerica