TCONS_00010289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010289
Unique NameTCONS_00010289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010289 ID=TCONS_00010289|Name=TCONS_00010289|organism=Clytia hemisphaerica|type=transcript|length=1253bp
tttttagaaaaaaaacaaaaatacaaaaaagaaattcaagaatgATACTA
GTAACTCTGCTATTGATAGGAAGCCTGTTTCATCAAGCTCATTGTGTTAG
TTCTGTAAAACCAGCGAATGAAGCAACATCAATTACAGTACAGAAAGGGG
ATGATGCTCTATTTCAATGGAACATTGTACTCGAAAATGGTGACCAAGAT
GTtggtttaaaacttttaaatggAACAACAGAATTATGGACTCAGCAAAC
GGGTAAAGTCAGTGATGCAGGAAAAGAACTTTTGCAAGAAAGATTAAAAG
TAGAAAAATCTGTAACAAATTTAAAAGCTACAATCAGAAACGTGGATTTC
AATGATTCTTCAATTGAATTGAAACTAACAGGAGCCATTTCTGACAGCGG
CTTCAATAAATTAAGTGATGTTGATTCTTCTATTGCATTGAATGTCCAAG
GTGGACCAGTCTATTGTGGTGCACAGCTTAAATCTAGTTATAATATCGGA
CTCAATGCCAGACGAAAATATGAATTATGCATTGAAAGTAACCCAGCACC
AGAAATAACTTACAAATTTCCGAGTGATGTAGAAGAGGGTGTCAAAGGAA
TTGTAACAGGACCAAGTTGGGACCACCAATACACAGCAAGCTTTGAGCTT
CCATCTGTAACTGCAGAAAACTGTGGCAAGGAGATGTCATACACAGTTAC
AACACCCAATTTACAAGGAAGTACACCTTTAACAGGAAAAGCAACTTTAA
CATTGACAGACCTACCATTAGATGTCACCATTTCCACCTTTTCATACGAG
TATGGGATCCCAACAGTAATGTGGAGAAAAATTGAAGCTGGATTATGCAG
TGACAATATTGTTTATTATATGGAAGTCAGTAACCAAACAGCCATTATAT
CCAAAGGACCTTTGAATGGAACCTCTCAAGTAGTAgatgagttaggtaat
gaaccAAAAGAAGTTGTTATGTGGGCTGAATATGACGGTCCAACTGGAAA
GAAGACTGGGCAACGAGTGACATTTGGATTTACCAAGACTACAACTACGA
CTACCACAACAACCACCACAGTGAAACCTGCTGTGCCAGTCGCCAATGAT
CCTGCCAAAGACGATGACAATTTGGGACTAATTGTTGGCGGTGCTGTTGG
CGGTGTAATTGTTCTTGCAGTCATTATCATCATTGTTGTGATTCTAATGC
GTAGAAAGAAAAGTGCACAAAAAGATGGGTAAGAAAGAATGAGACAAATC
AAG
Run BLAST on NCBI

transcript from alignment at sc0000104:78565..82901-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010289 ID=TCONS_00010289|Name=TCONS_00010289|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000104:78565..82901- (Clytia hemisphaerica)
TTTTTAGAAAAAAAACAAAAATACAAAAAAGAAATTCAAGAATGATACTA
GTAACTCTGCTATTGATAGGAAGCCTGTTTCATCAAGGTGAGCCTGATTT
TGTGTTTTGATTTGTGCAGCTCATTAATTCTTCTAGTCTATTTTTCATAG
TTATACTTTTCTATAAGAACCCACTTGCTATGGGGCAATTAGCTGAATGA
TTTGTAAAAAATCTTAACAATGTTTTTTACTCTCTAGCTCATTGTGTTAG
TTCTGTAAAACCAGCGAATGAAGCAACATCAATTACAGTACAGAAAGGGG
ATGATGCTCTATTTCAATGGAACATTGTACTCGAAAATGGTGACCAAGAT
GTTGGTTTAAAACTTTTAAATGGAACAACAGAATTATGGACTCAGCAAAC
GGGTAAAGTCAGTGATGCAGGAAAAGAACTTTTGCAAGAAAGATTAAAAG
TAGAAAAATCTGTAACAAATTTAAAAGCTACAATCAGAAACGTGGATTTC
AATGATTCTTCAATTGAATTGAAACTAACAGGAGCCATTTCTGACAGCGG
CTTCAATAAATTAAGTGATGTTGATTCTTCTATTGCATTGAATGTCCAAG
GTAAGATGTTTTTTATGAGCCTAGAAATATTAAAAGATGTTTATTGTTTC
TTGTTTCTGTGTTTTGCATGCCTGCTTCCAGAAATTAATCGAATGGGGGA
TAAAATCCAAAGAAAACTGCGAGCTATGACAGGAGGGTAAAGACCCACTC
ATGTCACTCAAGTGAGTTACGGCATGTCCGAAGTAAAAGTGAAGCAGTTC
CACTCACTTTCAAAATGTCAAACATAGCTGAAAAGAAGCGCCTTATGATG
TAGATCAACGCGATAGCTGTTAGAAAAATTTAAGTTAAGGCTATAAGAAG
TTATATCCCAAAAACCTGTATTATGACGTCATAAACATTACGTAATATTA
CGTCATTAAACTAAAAATTTGAATATCTCGTGAACTAAAAGCCATATACA
CGTCAAATTTTAACCATAAATAGATATTGATGTAAGAAAAATTTTGAATT
GAAAATTTTTTGAAAAAAATGATGACGTCATTTTTTAGAGCCAAAAATCG
AAAATAGCTTAAAATCGCTGACGTCATCATTTTTCAGGAGATTTGAAAAT
TCTTACGTCTAGAGAATTACGATATATTTATTCTGTCAAAATTTCATATT
GATATCATAAACAGTTTTTGAGTTATTCAATTTTTTAATTTAATGATGTA
ATGTTACGTAATGTTTATGACGTCATAATACAAGTTTTTTGGCTATAACT
TCTTATAGCCTCAAGTTAAATTTTTCTAACAGCTATCACGTTGATCTACA
CCATAAGGCGCTTCTTTCCAGCTATAATTGACATTTTGAAAGTGAGTGGA
ACTGCTTCACTTTTACTTCGGACATGCCGTAACTCACTTGAGCATGCAAT
TCCCATTATAAGAGACAACCATCTCCTTTTCTTTGTATATTTTGATTTTC
GATTTATTTTGAGAGTTGTTTGAGAGTAATTCAAAAGCCTGTTATCTTAT
TTTATTTTTCTACATTTTATGGCTTCTCCGTAAATATGGTACTGTAAAAA
TGTCTTATTAATGGTTATTTCAAAGTCATGAAAATTTGAAAAGCAAAGCA
TAGCTCTTTCCCAAATAGCTTTCATTATTGTAATTGTCAGCTTTTAAAGT
TGATTATACCACAATTTTCTCGTATATTTTGAAAACGCACTCTTACCAAA
TTGGTAAAATATAAAATTGTACCTATAGTGTTATAATATAGATTTCCTGG
GCTGTACCAAAATTTTGGTAATTGAATTTGGTTACGGATCTTTTCCTATT
ATAGCAGCAGCTAATTTGGCATGAATTCTTTGTAATTTTTTTAATTTTGA
TGTTAATCTTTTGCATCCAAAATCACTAAAAGCAACTTGCAAAAGGTAAG
CATTATTCTTCTCAGTAAATTATACACGTTAATCAAATTATTGAGTTTTT
AAAAATGACGGATGACACATTCTGTACTCATAACTTCTGTTTTTGTTAGG
TGGACCAGTCTATTGTGGTGCACAGCTTAAATCTAGTTATAATATCGGAC
TCAATGCCAGACGAAAATATGAATTATGCATTGAAAGTAACCCAGCACCA
GAAATAACTTACAAATTTCCGAGTGATGTAGAAGAGGGTGTCAAAGGAAT
TGTAACAGGACCAAGTTGGGACCACCAATACACAGCAAGCTTTGAGCTTC
CATCTGTAACTGCAGAAAACTGTGGCAAGGAGATGTCATACACAGTTACA
ACACCCAATTTACAAGGAAGTACACCTTTAACAGGAAAAGCAACTTTAAC
ATTGACAGGTATGTATGTGATTTTTATCTCAGATTTTTCAGAGAAACTTG
TTAAATAAACTATTTTTTGTGGGACCAGCAGGAGTGGTTTCCTGAAAAAA
AGGAATGCATAGAAAATTGAGAGAATTCATGCGCAAAAACGAGTTTGCCA
TCGCCATAAACTTGAGTTTGCCATAAACTTGAACTGCAAAATTTAGAATT
ACAGATACCCTTCTTATATAATACAACTAATTTTACAATTCTACTTTATA
GACCTACCATTAGATGTCACCATTTCCACCTTTTCATACGAGTATGGGAT
CCCAACAGTAATGTGGAGAAAAATTGAAGCTGGATTATGCAGTGACAATA
TTGTTTATTATATGGAAGTCAGTAACCAAACAGCCATTATATCCAAAGGA
CCTTTGAATGGAACCTCTCAAGTAGTAGATGAGTTAGGTAATGAACCAAA
AGAAGTTGTTATGTGGGCTGAATATGACGGTCCAACTGGAAAGAAGACTG
GGCAACGAGTGACATTTGGATTTACCAAGACTACAACTACGACTACCACA
ACAACCACCACAGGTTAAGCATTGCTGATCTTAAACTTTCTAGCGCAATA
CACCTATCAACCTTGATGATTAGGGTTTGAGTTTAAGGAATGTCATCAAG
ATGTCTTTAAGGAAATCAATGCAATGACTTAAGACATTATGACGTTAATC
CTACCTGGTAACTCTAACCTTACTCTTTTTTCCTGCTTTAATAAGGGAGA
CAGGTGAATTGAAAGTTTCTACTAATAATCTGTAATAGGCTGGATGATAT
GCATTATTACTAGCACCCTGTGTTTCAGTTTGTTTAGCCGTTTAGCCCTT
ATACAACCCTACTATTTAGAGGTTTCAGAAGATAAAATAGATTACCAAGC
TTGTTTGCTTCTTTCCAGTTTCAAGTGTTTTATTACAGTGTTTATATATA
AGTTTGACAGTAGTACAAGAATTGAGTCATCATTTTTTAATGGACAAGCT
GGGAAGTACAGAGGTATGTAAATTTGCTAGTTTAGTTAGCCTTAATAAAG
CCTCCAATCAGCTTATTTTGAATAAATTTGATAAGGAAGATACCAGTATG
AGAAGTCCTTAATGATAGTTGAGATATTCCCTAATTCATTTTATATTTGG
AAATATGCTTTTGTCGTTTTTTGTTATTCTTCATTGCCCCTTTTGAATGT
GTGATGTTCATTCTTCTAGTGAAACCTGCTGTGCCAGTCGCCAATGATCC
TGCCAAAGACGATGACAATTTGGGACTAATTGTTGGCGGTGCTGTTGGCG
GTGTAATTGTTCTTGCAGTCATTATCATCATTGTTGTGATTCTAATGCGT
AGAAAGAAAAGTAAGCATGCATGTCCTTTAATTTCCTTGAACATGAACAC
GCATGAACATGGCTTGGATATGTTTTACAAGAGTTGATTGAAACTTTTTT
TTTAAATGTTTTTGGAGCAAGTAGCCCCTTTTGAATTTGGTGTGATATGT
GAAAAAAAAATATGATAGTTTTACAAAAGAAAAGAGAAAGTTTGCTCTAG
CCTTTGTTTTTTCTATTTGAATTTTCTAGCAGCAAAACACGACTCCATTG
ATAACTCTACTAATGTTAACGAAAATCCTAATGCTGAATTTAAACGCGGT
AAGAGTTTTTACTGAACTTACTGCACACAGACAATGAAATACTAACCATA
CCAAATCTAACAATGCACCATTTTATGCATGTCGACAGATTATTTTTGCA
CCAAAGTTTTACTATTCCACTATCACACACATTTGGGGCTTCTTGTCCCA
AAATTAACTTGCATGACAATCTTTTTTTTTAATTTTTATGGCATGGGTTT
GCATGAGGTATTATACAAAATAACCTGGATGTTTAACACTAATTGTCCCC
TTAGTATCACAGTTTTGTATTAATTTCTTCTCTTTTCTTTATTCAGGTGC
ACAAAAAGATGGGTAAGAAAGAATGAGACAAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005778XLOC_005778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010289-exon-sc0000104-1575043694:82815..82901TCONS_00010289-exon-sc0000104-1575043694:82815..82901Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1575043694:82302..82664TCONS_00010289-exon-sc0000104-1575043694:82302..82664Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1575043694:80544..80852TCONS_00010289-exon-sc0000104-1575043694:80544..80852Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1575043694:79989..80300TCONS_00010289-exon-sc0000104-1575043694:79989..80300Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1575043694:79192..79332TCONS_00010289-exon-sc0000104-1575043694:79192..79332Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1575043694:78565..78605TCONS_00010289-exon-sc0000104-1575043694:78565..78605Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1510915933:82815..82901TCONS_00010289-exon-sc0000104-1510915933:82815..82901Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1510915933:82302..82664TCONS_00010289-exon-sc0000104-1510915933:82302..82664Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1510915933:80544..80852TCONS_00010289-exon-sc0000104-1510915933:80544..80852Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1510915933:79989..80300TCONS_00010289-exon-sc0000104-1510915933:79989..80300Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1510915933:79192..79332TCONS_00010289-exon-sc0000104-1510915933:79192..79332Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1510915933:78565..78605TCONS_00010289-exon-sc0000104-1510915933:78565..78605Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1491911889:82815..82901TCONS_00010289-exon-sc0000104-1491911889:82815..82901Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1491911889:82302..82664TCONS_00010289-exon-sc0000104-1491911889:82302..82664Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1491911889:80544..80852TCONS_00010289-exon-sc0000104-1491911889:80544..80852Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1491911889:79989..80300TCONS_00010289-exon-sc0000104-1491911889:79989..80300Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1491911889:79192..79332TCONS_00010289-exon-sc0000104-1491911889:79192..79332Clytia hemisphaericaexon
TCONS_00010289-exon-sc0000104-1491911889:78565..78605TCONS_00010289-exon-sc0000104-1491911889:78565..78605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:78565..82901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.83121	3.97987	9.12582	11.9121	124.632	97.6628	102.56	105.3	44.3755	61.6473	48.9735	42.0463	45.7121	25.1542	45.0565	36.8366	35.1278	38.6858	25.7947	34.9722	23.5903	21.5287	7.7489	10.7246	57.3304	59.9503	55.5965	50.7319	90.9094	87.473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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