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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010295 ID=TCONS_00010295|Name=TCONS_00010295|organism=Clytia hemisphaerica|type=transcript|length=2747bp
CTTACTGAAAAGGGTGTCTACTTAGCAATCTCCCTCGCACTTTACTGCTT
TCAACGTATCGTCATTAAGtaaacaaaattttgtcggAATCTTAAGATAA
CTTGACTTTGCAAATAATTGTAATAAACATTGTAAAAATATGTGGGATAT
CTGCTTTTCTGTGAGCGCCTACACATTAGAGTACGGTTTAGTTTAATAGT
TGGTTTGGAgatctttagaacaagtattctTTTGGTTCAGATGAGACTTT
CATAGTTGTTGTCTGTGTTGGTATGAAATcagattttttgttgttttttt
ctgtccATACTAAACCCTCTACACTCAACATTGCTTTCATAATCTACACT
TCATTTCTTTCGATGGCTTTCATTGTCGCTAGATCTCCTTTACTAGGTTT
CTTTGAAGGGTCGAGCTCAGCTAAGTTTACTCAGAGTAGTTAGTTTAAGG
CAAAGTATTGTTGATAGATTGGCACAGTACATCGTTGTCATTATGCTTTT
TAATAGAAAAAAGCCTTCACCAGTTGCATGTGCAATCGATATATAGTGAG
TCTttttataactcgaacctctataaatagaatgtctccttaacttgaac
aaatttTCTCATCTCTTTAGTTAACAGCCTTACAGACTTTACTCTATATC
TCGAAACTTCCTTAACTCGGACAAGTCGGTGTCCCCCTTGGTATGTGTCC
GAATTTAGACTCCACTGAAAAATCTTACTTTATTCCTCAGCGCTAATATt
gacatcagcaaaaaaatatttagtatcGAGTTATGAAAATACTAATGTGA
TAAacgatacacgctttttttatttataagaatacactttataagaatgt
ccatgatgaaaatggccaaaaaattaagaatatggtaagaatatcaccat
catggaatttaacaactgaacctaagaatgccgtTTTTAATGCATTTCAA
CCTGTacattgccaatttcgatctaaccctaagaatgttgtaagaatatt
tttggatgattttcgccaaaaagttaagaatatccatgatgaaatgaaaa
aacaccattcttataaaaaaaaaaaagcgtgtaaccgATAATAATTGACA
GACCGAAGAAGAAGCACAATGTCGGAAAGAACCACCAACACTAAGGTGGT
TCTGATAGCCATCGATTCCAGCAATACTTTATTGTTAAAATGTTGTATTG
aaatgctgaagatgagtaaattAGGTGATTATCATTTCCATTTGACTACT
GTAAGTCAGGATGAAGAAACGCTGTCAAACCTGGTTGTTTTGAAGGAATT
GAACCATCGGTTATTTTTCCATCAAACAGATGTCCGAAGTGACGATTCTG
TCCGACAAACCATTCACAATGTCCTACAAATCGAATCCCGTATAGACGTC
CTTGTCTGCCACATTGAGAATCGAACGATAGTCGACGCATGCAGTACAAA
CTCAAATACTGTCAATCACGTATTGGAAGAAAACTTTTATCCAAATTTTC
GTTTTATTACAAACATTATCGAACACATGAAATCATCGTCTAAGGGTGGT
TTAGAAAATGATGAAAAGGGCGGTAATGATGGCGGGAAAATTATATTGTT
GAATTCGTATGCTGGCATGCAAGGGATTTCACACTCGTCAGCTTTTTGTG
CAACACGATTCGCATTGAATGGTTTGGTACAGTCTGCTGCTGCTGAAACT
CTTTCAAGTAAAATTAGgttttgcgTATTACAGACTGTATTACAAAAAAT
GCCTTGTGCTCTTCTATCGACCGAGGCAAATGAAACCGAACCACTATCGA
ATGAAGATCGAGAGCTTATCCAATCGATTGATGACGATTTAGAAAAACGA
AAATTACTCGCAGAATACAGCATATCGGATACATCAAAGtctttaaaaac
attatttacgaCGGATTTCCCAGATTTACGACAATTTACGAACAAAGCTA
TAAAAAGCGAGGCTTACGATAAATTTATTGACCCTAAAGGCATGAAGACA
TTATCGGAGACAGTGCAATTTTATTTGAACCTTGACTTGGACGAGTTTCG
CGAAGAAAGAAAgacaaaaatgaaattcaatttattgaagaaaacttcgt
cacattttagatGCACCAGTTCAAATATcgtgatttgattttgattctgC
AAACAGaatctttcagaatttgaaaTACTGAGTAAGCAGAGAACAGAAAA
AGGATCCCTTTCATGATTTGAAATATCCCACTCAAGGCGGGTgtcgttgt
ttcaacattcacaTAACGTTCATATCGTCATAAATAACAtgagatgaacg
ttgaaacattGTGTGGCAGCTGGGGTAGAATGGAACTTTTATAAGATGTC
AAACCTTATTTTGAAAGAGACTCTTAAATGAAATACGAAATGCAAAGTTG
CAACGTTAAGAAGATATCCATTAAACGTCCACATCCTTctataaacgttg
aaacaacataaCTAATATTCTTTGTCACAGTTACTTACGAGAAATAAATC
ATATACGTTATAAATACAGTGAAGTCTCATTCGAatatctctttaactcg
aacaaatcttATTGTCTCTTCCTTAtctaaaccttactccataactcgaa
atttctttaGCTCGAACAAATTTATGTTCCCCGTTCAGTGTTCGAGAAAT
GGAGGCTCTATTAATACCATTTACCTACACAACCTTGGAAATAGATGCTG
TTTATTCTCTTCGTCGATCGATGACTTTAAATTACCTTTCCAACGAG Run BLAST on NCBI protein sequence of TCONS_00010295-protein >TCONS_00010295-protein ID=TCONS_00010295-protein|Name=TCONS_00010295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MSERTTNTKVVLIAIDSSNTLLLKCCIEMLKMSKLGDYHFHLTTVSQDEE
TLSNLVVLKELNHRLFFHQTDVRSDDSVRQTIHNVLQIESRIDVLVCHIE
NRTIVDACSTNSNTVNHVLEENFYPNFRFITNIIEHMKSSSKGGLENDEK
GGNDGGKIILLNSYAGMQGISHSSAFCATRFALNGLVQSAAAETLSSKIR
FCVLQTVLQKMPCALLSTEANETEPLSNEDRELIQSIDDDLEKRKLLAEY
SISDTSKSLKTLFTTDFPDLRQFTNKAIKSEAYDKFIDPKGMKTLSETVQ
FYLNLDLDEFREERKTKMKFNLLKKTSSHFRCTSSNIVI Run BLAST on NCBI transcript from alignment at sc0000104:119094..123621- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010295 ID=TCONS_00010295|Name=TCONS_00010295|organism=Clytia hemisphaerica|type=transcript|length=4528bp|location=Sequence derived from alignment at sc0000104:119094..123621- (Clytia hemisphaerica)
CTTACTGAAAAGGGTGTCTACTTAGCAATCTCCCTCGCACTTTACTGCTT
TCAACGTATCGTCATTAAGTAAACAAAATTTTGTCGGAATCTTAAGATAA
CTTGACTTTGCAAATAATTGTAATAAACATTGTAAAAATATGTGGGATAT
CTGCTTTTCTGTGAGCGCCTACACATTAGAGTACGGTTTAGTTTAATAGT
TGGTTTGGAGATCTTTAGAACAAGTATTCTTTTGGTTCAGATGAGACTTT
CATAGTTGTTGTCTGTGTTGGTATGAAATCAGATTTTTTGTTGTTTTTTT
CTGTCCATACTAAACCCTCTACACTCAACATTGCTTTCATAATCTACACT
TCATTTCTTTCGATGGCTTTCATTGTCGCTAGATCTCCTTTACTAGGTTT
CTTTGAAGGGTCGAGCTCAGCTAAGTTTACTCAGAGTAGTTAGTTTAAGG
CAAAGTATTGTTGATAGATTGGCACAGTACATCGTTGTCATTATGCTTTT
TAATAGAAAAAAGCCTTCACCAGTTGCATGTGCAATCGATATATAGTGAG
TCTTTTTATAACTCGAACCTCTATAAATAGAATGTCTCCTTAACTTGAAC
AAATTTTCTCATCTCTTTAGTTAACAGCCTTACAGACTTTACTCTATATC
TCGAAACTTCCTTAACTCGGACAAGTCGGTGTCCCCCTTGGTATGTGTCC
GAATTTAGACTCCACTGAAAAATCTTACTTTATTCCTCAGCGCTAATATT
GACATCAGCAAAAAAATATTTAGTATCGAGTTATGAAAATACTAATGTGA
TAAACGATACACGCTTTTTTTATTTATAAGAATACACTTTATAAGAATGT
CCATGATGAAAATGGCCAAAAAATTAAGAATATGGTAAGAATATCACCAT
CATGGAATTTAACAACTGAACCTAAGAATGCCGTTTTTAATGCATTTCAA
CCTGTACATTGCCAATTTCGATCTAACCCTAAGAATGTTGTAAGAATATT
TTTGGATGATTTTCGCCAAAAAGTTAAGAATATCCATGATGAAATGAAAA
AACACCATTCTTATAAAAAAAAAAAAGCGTGTAACCGATAATAATTGACA
GACCGAAGAAGAAGCACAATGTCGGAAAGAACCACCAACACTAAGGTGGT
TCTGATAGCCATCGATTCCAGCAATACTTTATTGTTAAAATGTTGTATTG
AAATGCTGAAGATGAGTAAATTAGGTGATTATCATTTCCATTTGACTACT
GTAAGTCAGGATGAAGAAACGCTGTCAAACCTGGTTGTTTTGAAGGTATG
TTCAATTCCCTTAATCACACAACTATGGATTTTATTTCCTTTCTCCATAC
TCTTGGTGTCTAATAAATTACAAGCCTCCCTGTTTGTTAATTTTTCGTTT
GCTTCCCAACTCCCCCGGACCTTGTTAGGACCCCATTCAAACTCTTTTAA
ATACTAATATTTCTACCATTTTCTTAGGAATTGAACCATCGGTTATTTTT
CCATCAAACAGATGTCCGAAGTGACGATTCTGTCCGACAAACCATTCACA
ATGTCCTACAAATCGAATCCCGTATAGACGTCCTTGGTACTAAGAAATGA
AATATTACCTATCCATACCCATCATCTTATATCAATAACTAGGTAGTTCT
CTCCCCGAGCACTTACCTATTTAAAGCCTTCCCTTCTTAACTTTTTAAGT
TTTAAGCCTAAAAATGTGTTTAACGTGTTGTTATATTCACCATTTTTTGA
GTAATTTTGAGCAATTTTCTAAGAAAGCAGTTGTTTTAAGTCCACAAAGC
ATTGAAATGTACTTACTTGCTCTTATTATTTATGCCTTCGAGCCTTCTGG
TTTTAAAGTATGTTCTTCTAAAAAACGTGTGTCATTTTACAATAATGCCC
TTTTTGGTTGAGGTCCCTAATTTTTTTAAACTATATATGCTATATTCTTT
TCGATAAAATATTGACATAATATTTCACTTCAGGCCCAGTCCCCAGTTCT
GACATAGCGTCAGCCCCCCTGCTAGTTGGGGAGGAGTTACACCCTCCAAA
AAGCCAAAAAAGGCTAAAGATGTTTCAAATATTTGGGGGGACCTAGTGTA
CTTGGGGGAGCTGATATCTCATCATTCAACGTGGGGGCTGAATACTTCAT
CTTAATGGTTGGTTTCAATTACTCAACTTAAAGCTNAATGTCATAAACTT
TTGGGGGACTTAAAACTCAGGGGGGACCTTATTTTTGCTTGGGACCTAAA
CCCAGGCTGACGCTATGCCCGATAACCAAAAGATGAATTTGTATACGTAT
GGTATTATTCACCTAGTGTTTGATTATTCAATATTTTTTTTCATTGCAGT
CTGCCACATTGAGAATCGAACGATAGTCGACGCATGCAGTACAAACTCAA
ATACTGTCAATCACGTATTGGAAGAAAACTTTTATCCAAATTTTCGTTTT
ATTACAAACATTATCGAACACATGAAATCATCGTCTAAGGGTGGTTTAGA
AAATGATGAAAAGGGCGGTAATGATGGCGGGAAAATTATATTGTTGAATT
CGTATGCTGGCATGCAAGGGATTTCACACTCGTCAGCTTTTTGTGCAACA
CGATTCGCATTGAATGGTTTGGTACAGTCTGCTGCTGCTGAAACTCTTTC
AAGTAAAATTAGGTAAGAATACAAATATTTTTTATAAGAGCGTTTATATC
TATCCGCAGACACGTGTTTCGTCCTTCCCAGGACTCATCAGTGCGGCTTG
GGTAAGCGAGAATAGACTGCTGTTGTCACCAGAGTGCTCAAACAGTCGGG
AACACTATATGGAAAAGGCAACTATTGCCTTATGGTTAACGGAAATTATT
TCCCGAACGGGAAGGTGGAAAACTTCCCGAAATGGCTAGAATTTCCAAAT
TGGGAAGTTCATCAGTTTCCCGATCGGGAAAGTGGCCTCTGAGAACTCCG
GAAATGCCTGTGGAAAGTTAAAAACTTAAAATAAATAATATTCACCAGGT
ATTTAAAAAATCTACTGGGTAATCGCTTCTTGATTCTACTTTCCCCATTC
CCAATTAAAAACTTTCCCTATTTGGAAACTTTTGCTCGATCGGGAAACAA
AAATTTGCTTTGTTTACAAAAATTCTATTTCTCGTTCGGGAACGATGAAA
AGTGATGAAATTTTCAATCTGGAAACAGTTTCATTTTCGGGTCATTTCAT
TTTCACCTTCCCGTTAAGGCAATAGTTGCTTTTTTCATGTAGTGGTACCG
ACTGTCAAAACACTAAGTGTTGAGCTTTGCATAAGAACGTTTTTGCTTTG
CTTATCAGTCGTTATTCTGCTTTGTGTACTTTGGGAAAGTTAGAAAAAGA
GAAAATAAAAAATGTAACAGGCTTGTTTCGTAGATTCATCAGCCTGATCT
AGATACTTCAAAGTATCTTTGTACCAAAAATAGTTTCCTAGCACTTAAGT
GTTTTTCTTTCTTTTCCATCTTTATTTTTGCCTTGTTTTTTTTTTCAGGT
TTTGCGTATTACAGACTGTATTACAAAAAATGCCTTGTGCTCTTCTATCG
ACCGAGGCAAATGAAACCGAACCACTATCGAATGAAGATCGAGAGCTTAT
CCAATCGATTGATGACGATTTAGAAAAACGAAAATTACTCGCAGAATACA
GCATATCGGATACATCAAAGTCTTTAAAAACATTATTTACGACGGATTTC
CCAGATTTACGACAATTTACGAACAAAGCTATAAAAAGCGAGGCTTACGA
TAAATTTATTGACCCTAAAGGCATGAAGACATTATCGGAGACAGTGCAAT
TTTATTTGAACCTTGACTTGGACGAGTTTCGCGAAGAAAGAAAGACAAAA
ATGAAATTCAATTTATTGAAGAAAACTTCGTCACATTTTAGATGCACCAG
TTCAAATATCGTGATTTGATTTTGATTCTGCAAACAGAATCTTTCAGAAT
TTGAAATACTGAGTAAGCAGAGAACAGAAAAAGGATCCCTTTCATGATTT
GAAATATCCCACTCAAGGCGGGTGTCGTTGTTTCAACATTCACATAACGT
TCATATCGTCATAAATAACATGAGATGAACGTTGAAACATTGTGTGGCAG
CTGGGGTAGAATGGAACTTTTATAAGATGTCAAACCTTATTTTGAAAGAG
ACTCTTAAATGAAATACGAAATGCAAAGTTGCAACGTTAAGAAGATATCC
ATTAAACGTCCACATCCTTCTATAAACGTTGAAACAACATAACTAATATT
CTTTGTCACAGTTACTTACGAGAAATAAATCATATACGTTATAAATACAG
TGAAGTCTCATTCGAATATCTCTTTAACTCGAACAAATCTTATTGTCTCT
TCCTTATCTAAACCTTACTCCATAACTCGAAATTTCTTTAGCTCGAACAA
ATTTATGTTCCCCGTTCAGTGTTCGAGAAATGGAGGCTCTATTAATACCA
TTTACCTACACAACCTTGGAAATAGATGCTGTTTATTCTCTTCGTCGATC
GATGACTTTAAATTACCTTTCCAACGAG Coding sequence (CDS) from alignment at sc0000104:119094..123621- >TCONS_00010295 ID=TCONS_00010295|Name=TCONS_00010295|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000104:119094..123621- (Clytia hemisphaerica)
ATGTCGGAAAGAACCACCAACACTAAGGTGGTTCTGATAGCCATCGATTC
CAGCAATACTTTATTGTTAAAATGTTGTATTGAAATGCTGAAGATGAGTA
AATTAGGTGATTATCATTTCCATTTGACTACTGTAAGTCAGGATGAAGAA
ACGCTGTCAAACCTGGTTGTTTTGAAGGAATTGAACCATCGGTTATTTTT
CCATCAAACAGATGTCCGAAGTGACGATTCTGTCCGACAAACCATTCACA
ATGTCCTACAAATCGAATCCCGTATAGACGTCCTTGTCTGCCACATTGAG
AATCGAACGATAGTCGACGCATGCAGTACAAACTCAAATACTGTCAATCA
CGTATTGGAAGAAAACTTTTATCCAAATTTTCGTTTTATTACAAACATTA
TCGAACACATGAAATCATCGTCTAAGGGTGGTTTAGAAAATGATGAAAAG
GGCGGTAATGATGGCGGGAAAATTATATTGTTGAATTCGTATGCTGGCAT
GCAAGGGATTTCACACTCGTCAGCTTTTTGTGCAACACGATTCGCATTGA
ATGGTTTGGTACAGTCTGCTGCTGCTGAAACTCTTTCAAGTAAAATTAGG
TTTTGCGTATTACAGACTGTATTACAAAAAATGCCTTGTGCTCTTCTATC
GACCGAGGCAAATGAAACCGAACCACTATCGAATGAAGATCGAGAGCTTA
TCCAATCGATTGATGACGATTTAGAAAAACGAAAATTACTCGCAGAATAC
AGCATATCGGATACATCAAAGTCTTTAAAAACATTATTTACGACGGATTT
CCCAGATTTACGACAATTTACGAACAAAGCTATAAAAAGCGAGGCTTACG
ATAAATTTATTGACCCTAAAGGCATGAAGACATTATCGGAGACAGTGCAA
TTTTATTTGAACCTTGACTTGGACGAGTTTCGCGAAGAAAGAAAGACAAA
AATGAAATTCAATTTATTGAAGAAAACTTCGTCACATTTTAGATGCACCA
GTTCAAATATCGTGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010295-exon-sc0000104-1575043694:122327..123621 | TCONS_00010295-exon-sc0000104-1575043694:122327..123621 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1575043694:122036..122144 | TCONS_00010295-exon-sc0000104-1575043694:122036..122144 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1575043694:120960..121272 | TCONS_00010295-exon-sc0000104-1575043694:120960..121272 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1575043694:119094..120123 | TCONS_00010295-exon-sc0000104-1575043694:119094..120123 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1510915933:122327..123621 | TCONS_00010295-exon-sc0000104-1510915933:122327..123621 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1510915933:122036..122144 | TCONS_00010295-exon-sc0000104-1510915933:122036..122144 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1510915933:120960..121272 | TCONS_00010295-exon-sc0000104-1510915933:120960..121272 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1510915933:119094..120123 | TCONS_00010295-exon-sc0000104-1510915933:119094..120123 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1491911889:122327..123621 | TCONS_00010295-exon-sc0000104-1491911889:122327..123621 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1491911889:122036..122144 | TCONS_00010295-exon-sc0000104-1491911889:122036..122144 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1491911889:120960..121272 | TCONS_00010295-exon-sc0000104-1491911889:120960..121272 | Clytia hemisphaerica | exon |
| TCONS_00010295-exon-sc0000104-1491911889:119094..120123 | TCONS_00010295-exon-sc0000104-1491911889:119094..120123 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:119094..123621 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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