TCONS_00010299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010299
Unique NameTCONS_00010299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010299 ID=TCONS_00010299|Name=TCONS_00010299|organism=Clytia hemisphaerica|type=transcript|length=2724bp
TTCGACTTATATTACTTGATTTCATAATGAACGTGTTCAGCAAATTTGGA
GAAACACTCCACTCAGTCGATGCGCATGCGCTATTGAAATCAATCGGTCT
TGAACAAATGATGTCAGATGCGCCAACAGACCATAAATATCTAGCCTACC
TTAGTGGTGGAATCCTAGCTTCGGCTGCAGTATTATTTGTCGGTAACCGT
TTGTTTCATGATCGTCTTTCCAGTTGGAACCTACCAGGACCGAAAAGTTC
ACTCCTGCCGATAGACCTGTTCAAAGGTCACAAAAACCAACACCAACTAC
ACTTATTGTTAGACGACTATGTGAAAACTTACGGCGAAACTTTCGCTTTT
AATTACAAAGGACAGCCTGTTGTCGCAACGACAGACGAGGATATCATACA
TAAAATATTATGGAAAGAATTCCCAAACTTTGAAAACAGAAAGTTCTTTG
TCGAGATGCCGTGGCCTTGTCAACACATGGTAACCATGGCAAAAGGAGCA
AAGGCCAAAATGATCAGAAACCTTTTGAAAGCTGTATTAGACgccaaaag
tatcaaaaataaTTGGGCTCATTTTCAAGAAGCGAACCAGGACGTGGAAG
AGCTCTTGAGGGACGCCGCGTTAAACATGCTAGAAGTTAATTCGACAAGT
TTAGCAAATGGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCT
TGATTGCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCAC
ACCTCTTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCA
ATCATTGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTT
GCATCAGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAG
AAAAGAATCGCGAACCACAGGATGTATTGGACGTTCTGTTAGCAGCACAA
TCCAAAGACTCCAACATCAGCACTGAAATTCTATTAGCTCAGGCTATTGT
TCTCCTCACTGTCGTCCACGCTTCAACCGCCACGACGATCTCCATAGCAA
CCTATTATATCGCCAAACACAAAGATGTACAAAGGAGACTACAACAAGAG
ATTGACAGTATCTCAATGGAAGATGGATTTCCATCTTGGGAACATCTACA
TAAACAGTTGCCATACCTTGGACAAGTTGTCAATGAAACTTTACGCCTCT
ACCCGTCAGCCTTTATGTTGATGCGTGAATGTACAAAGCCAACAACAGTC
AATGGCATCTCCTTTGAAAAAGGTGACGGAGTTCTCATCCCAACCTATTC
GATGCATCGAGATCCTAAAGTTTTCACTGATCCTGAACAATTCAATCCAG
ACCGGTTCGAGACCAAACCATCAAGACATTATTATCCGTTCGGTGACGGC
TACCGTATGTGTCCGGGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTA
CTTAGCTTCGAtgttgaaaaactttgatttgTCACTTGTTGACGAGAACC
AAGAATTATGCGTCAAATCATACATTTCAGCTCAAACCACAATGGCGGTG
GATGAACCAATCCAAATTCGTGTACAAAAAAGACGTCATTAGATGTAATT
TATAATGTAACCAAGGATGTCCTATATCTACCATCGgttaaattttgcag
atttttcgaATCCATGGAAACAATTGATGATCTGTTTTCTGGATGTTATA
TCTCTGATCAACCTCTACACCAATACTTCATGACAAAGAGTACGAGTTTA
CTTGTGTCTAATGACGGATGTTTGAAGTCATTGATGTGTTTTAATAGATA
CACTCTCTTGGACCCCCCTCCCCCTGACCCACTGGaaagtttttccaaat
tttcgtccccggtagaaaaaaataccctaaaatttcaggCCTATTTGCTT
TTTTGACCgctaaaaacaaaagaattttattCCCCATTGGCGGGAGTTCG
ATAGagattttatccccactgtgggaagaaTTTCTAACGGGGCTTAGTGA
CAGAGGTGTAGATACAGATATTTGACTCCGATAAGTCCGAACACAACCTT
CTTGTGAATTTCGGGTTAACTGGTATATTCGGTTAATGAAAGACTGTATT
Atagtatggcgcgccaaaaggctatttaatactaactttttttataatac
caacttttttttataatatcaactttttttataatatcaacttttttttt
tataataccaacttttttttttataaaaccaactttttttttatagtacc
aactttttttttagttcaaagttttttcataaCACCAATTTTTGTCTCGC
TTACTATGCGTGTATAATCGATCAAGTGTATTaaaatgaaagttggtatt
ataaaaaaaaagttgatattataaaaaaagttggtattataaaaaaaagc
tggtattataaaaaaaagttagtattaaaaagcctttttggcGCGCCATA
TTATAGCCTCACATTCGTAACAAAAGTTGTGCAGGTATCATAACATATCC
ACATTAAAACGGAGTATGGGAGGTGTTGAAGAACCAAGAACTTTTGTATA
TGGTTCATTGCAGAAGAAAAAGTTGGTAATATTTTGTTTGGTTAAATTCA
AGAAGgaataaatttattttaaaaagacaattatTTCTTCATTATGTTAA
TTGTAAATAATCATGCATATATATAATCTTTAATATggtgcttattaaaa
aaacacatGAATCTTAAAATAGCA
Run BLAST on NCBI

transcript from alignment at sc0000104:175374..184595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010299 ID=TCONS_00010299|Name=TCONS_00010299|organism=Clytia hemisphaerica|type=transcript|length=9222bp|location=Sequence derived from alignment at sc0000104:175374..184595- (Clytia hemisphaerica)
TTCGACTTATATTACTTGATTTCATGTACGTAGTAAAGATAATTCCGAGT
TTTATTGTTAATTGAAGGGACCATAACGCTTGTTCGAGTAAAGGAGACAT
TCGATTTTTAGTGAATAAACTTCTTTACACATCTTCATATAGTCATGCTG
TGACGTCATTAGTGTCCAGGTCTTGCTGCGAATTAATACGCTATCACTTC
AATTCATGGTGTTCTAATTATATAAGTATACTTGCCGGTATCTTAAACAT
CTGTTAAAATAGGCGATTGAAATTTATGTACCTTTTTTATAAGAATCAAT
AAATTTTGGCTTAGGCTTATAGCTGATCTTATTTTTTTCGTGATTTTCAG
GCGTAAAATTTTCTTACTTAAAAAAAGAGACATAAGATCTAGCATTTCTA
TAATCTGGGAGGCCTGGAATGTTCATAGCTTGGTCTTACGGTATTGTTCT
TATTGAAGAATTTGATTGATAGAAGGTCGGTCTTTTACTGGGGTATGGTT
TTGAAATTTGCTACGACTTTCCGAGTGAGTGTTTTATTTTGTCGATGATG
CCAATCAGCGTGTATTTAAAAACCTACTAGCTTATTGAAACTAATTTTCG
CAGGAACTAATATTCATGGTCGAAAAAAAATCGGAAAAATTGCATTTCGC
GGGTTTTAATTTTCGTGGTTTTGCCCTTTTTTTGGACAAATTTCTTTCAT
TTTCCTAGGGATTTTTCAAATTTTTCGATAAAATTGGAAAAATTGTATTT
TGTGGCTTCAGATTTTGGCGGTTTTACAAAAAAACCGTGAAAAACGCTAA
ACTTAATTCCCGCGAAAATTAGTTCTAATAAAGTAATACTTGTTACCACT
TCCGAAATCTCTCTTGAGATATTTAGAGTATAGTATTTGCTTTTTTAAAA
GGTTCGGCTTTTTAAAAGCCAGTTTGACTTCGGTTTAAAGCCATGCTCAT
ATTTTAAAGGATTTTCTTGACTGGTCAGCACGATCATTTCATTGTAAAGA
AAATTTGAAATAATCCAAATTGTTTGAACGATCAAGCTAATTGCATAACA
GACCCCCCAGAGCGACTCAAACGAGCCGAAAAACTTTTTGCTGTCTTATT
TTAGTTTTTTTTGTTTAGACTCTGGCCATATTTCTAAACTTTTAGTATTG
CTGAAATTTTGTGATGTTACGGGAAAGTTGATAAGTTTGCGCGATTGGAT
TTTGAGGAAATCCACTTAAAAGAGACAAGTTTTATTCTGTTTTTGTAATC
AACCCAGATACATAAAAACGCCTTCGTCATCAGGAGATTGCTATTTGTGT
GACAGCTCTTGTGATGAAATTGCCAGCCATGAGATTTGATGTGAATTTAG
TTCGAATGGTTGAATCAAAGAGACTTCTATTAGTAACTCTTAAAAAGCTA
ATAAAATTTAAAGATTCTAAAATTAAATGGAGTTTTGTTGGTATTTTTGG
GCTTTTTAAGATGAGTATCATGGATCTATTAGATATATTTTGGATTTTTG
GAGTAAAGCTGAGTAACTTAGTAGTTGAATAAAGCTTAGTTTTTTCTTTT
TTATCTATAGAATGAACGTGTTCAGCAAATTTGGAGAAACACTCCACTCA
GTCGATGCGCATGCGCTATTGAAATCAATCGGTCTTGAACAAATGATGTC
AGATGCGCCAACAGACCATAAATATCTAGCCTACCTTAGTGGTGGAATCC
TAGCTTCGGCTGCAGTATTATTTGTCGGTAACCGTTTGTTTCATGATCGT
CTTTCCAGTTGGAACCTACCAGGACCGAAAAGTTCACTCCTGCCGATAGA
CCTGTTCAAAGGTCACAAAAACCAACACCAACTACACTTATTGTTAGACG
ACTATGTGAAAACTTACGGCGAAACTTTCGCTTTTAATTACAAAGGACAG
CCTGTTGTCGCAACGACAGACGAGGATATCATACATAAAATATTATGGAA
AGAATTCCCAAACTTTGAAAACAGAAAGGTTTGTTTCTTTACGTGAAAAA
TTTACCTATTCACAACTATTCGACCTCTTTTGAGTAAAGTGCAAATAATT
GGATGAAGGCCAAGAATGGACCATTCAAATGACATCGAGGGCTTCGTTTA
TGTAAGGTGGTTGCCCTGTATTTTTAAATATTTGACCCACTTCCTTGGCT
TTTAATGAGAAAAATCCCTTTCACAATTTCCAGCTTAGTGATCTTTTGGT
ATTGATACGCAATACGCCTTTTCTACTAAAGATCCCCTAATTTTCTTTAC
CACATTTACAAGCTTAGACCATAGTCATTATAAAAAACACCGGTCTGGCA
ATGTATTGTTATAGCTTTTTGTTCAATTTTCTTTTTTTACAAATAAAAGA
CAAGTTGCGATCTGCATACTTTTTGATCACGTTACCAAAGTCTCCTCTTG
GGATTGGTCTATTTTCTAATCACATGATCAAAAAGTTTGCAAAATAAATC
GATTTTGGTAAGCTCTATCTTTTAACAATAAGAAGAGACAAAAGCCTTCC
AGACCAGTATTTTTATAATGACTATGCTTAGACGGCCCGACACGTTTTCA
ATTGGGCCCTTTAATATGTATTTTGTTCACCTTACAGTTCTTTGTCGAGA
TGCCGTGGCCTTGTCAACACATGGTAACCATGGCAAAAGGAGCAAAGGCC
AAAATGATCAGAAACCTTTTGAAAGCTGTATTAGACGCCAAAAGTATCAA
AAATAATTGGGCTCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGCTCT
TGAGGGACGCCGCGTTAAACATGCTAGAAGTTAATTCGACAAGGTAAAGG
CTTTTAATGAGATGTTCATTTCTTGAATACTTTTGGAAGTCTGAGCCCGG
GGTCTACCTTAATGGAAGAAATCTTCGTTGGAATGAACTTTTGCGGAACG
AATTTTTGCGGAAATAAACTTTTGCGGAACGAATTTTCGCGGAATTTAAT
TTCGCGGTTTTTTTGACAAATCCGCGAGATAAAATTTCGCGAAACACGAA
TATTTTTAGGATTTAAAGTTTACCTTAAGGTAGTTAGAATGAAGCAAGGC
ATTTATTTGAAAAAAAAGGGTATTGAAAAGATGTGTTTCATGTTGGCGAC
TTCGTCAAATTCTCCTAATCTACTTCACTGAACCCAAGGGCATCAAAAAT
CATTAAAAAAGTAGAAATTAGCCAGAATTAGACTTGGAAGGGTTCTAGGT
TCGTTGATAAACAGCCTATAAAATCTACCGCACGAAGAATAGATTCAATC
TGTCGTAAAAATGCGGCGCGAAAATTTTTTTTATCTAAAAACANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGACTTAATAGTGG
GAAGATTTCGTATATGATCTCCGAGGTTATTCCATTCATTTATGCAAAAA
GGAAAGAAAGAGGCACGATAACGCTCGGTTCTACAAAAAGGTGCCTCGAG
TGGTGGTTTTATCCTTCGCCCTGCATTGCGTTCTTCCTCTCCTCTCTGGG
GAGGAAGAATATTCTTTAAGGCTTTTAAAGGCTTTTAATGAGACGTTCAT
TTCTTGAATACTTTTAGAAGTCTTAGCCCGGGGTCTACCTTAAGGGAAGA
AATTTTCGCGGGAATGAACTTTTGCGGAACGAATTTTTGTGGAAATAAAC
TTTTGCGGAACGAATTTTCGCGGAATTTAATTTCGCGGTTTTTTGACAAA
TCTGCGAAATTAAATTTCGCGAAACACGAATATTTTTAGGATTTAAAGTT
TAGCTTAAGGTAGTTGGTTTGGATTTTTAAAATAGAATGAAGCAAGGCAT
TTATTTGAAAAAAGGGTATTGAAAAGATGTGTTTCATGTTGGCGACTTCG
TCAAATTCTCCTAATCTACTTCACTGAACCCAAGGGCATCAAAAATCATT
AAAAAAGTAGAAATTAGCCAGAATTAGACTTTAGTCTGGAAGGGTTCTAG
GTTCGTTGATAAACAGCCTATAAAATCTACCGCACGAAGAATAGTCAATC
TGTCGTAAAAATGCGGCGCGAAAATTAAGTTTTTTGTATCTAAAAACAAG
CTTAACTTTTATCGATTTATCTATCGATGTCTATAGTCATTTCTAAATAT
GTTTAGTTTAGCAAATGGATATATCATGCAGATCATCACCAAGATGGCAT
TTTCGCTTGATTGCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAA
CTATCACACCTCTTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAG
TCTCCCAATCATTGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACT
CAAGTTTGCATCAGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGA
CGCAAAGAAAAGAATCGCGAACCACAGGTAAGCGCCTGAGTAACTAGCAT
GCTGGCATCCACTAACGGATTCTTCTTCCTCATACTAACTGCAGTTTGGT
AGAGGTCTGAGATTTAGATTACTGAGCAACCTCATCCCTAAGCATGGAGT
GATTCACCTTCAAGAAAAACTTTGTCCAAACAAATAACTTTGTGAGAGAA
TCACTACAGATTATGATTTTTCACGAAAAATAGTTTTCTACCGAGTACGA
GTAATGACTAATAGTCTCTATAAAATTGATTACAATTCAGTTGTTTTTAT
TGATGATGCAACGTTGGCTCGAAAGTATATGTTTAGACAAACGTGTAGTA
TACTCTTCGCAATTTCATATTTTGCCTGTTTGTCTGTCAAATAATTTTTT
TCTATTTGGAAAACTACATACTTACAATCTGGCTCTCCCAGTGTCGTTCG
AGTGTCATGGTATACGCCATGGCTTGGCAGCTCGCGTCTGTCTAGTTGCA
GTGTCTGTCAGCGCCGTGATTCCTACTCTTTCGTGGGTAGGACCCATCCC
AAATGCATTCGGAGGGCTATCTATCTATATCTATATATCTATCTATTATA
CTTACAATCAACCTACTTCCAAGACTATTAATATAAATATTTGTCAACAA
TCAATACTTTTGCTTCTCTTTCTAGGATGTATTGGACGTTCTGTTAGCAG
CACAATCCAAAGACTCCAACATCAGCACTGAAATTCTATTAGCTCAGGCT
ATTGTTCTCCTCACTGTCGTCCACGCTTCAACCGCCACGACGATCTCCAT
AGCAACCTATTATATCGCCAAACACAAAGATGTACAAAGGAGACTACAAC
AAGAGATTGACAGTATCTCAATGGAAGATGGATTTCCATCTTGGGAACAT
CTACATAAACAGTTGCCATACCTTGGACAAGTTGTCAATGAAACTTTACG
CCTCTACCCGTCAGGTAAATATTCTATGTTTCTTTCATAGACGAGACAAT
ATTAATTTAACTTTTTTTTGTTTTACGGGACGAGATGGAGTTTTTACTAG
CTCCTATTTGATTTGAAATTAATAAGTTAATAAGTACAAACAATTACTAG
ACATAGGAAGGCGGAATTCAAGGATAAATCAGGGAAGTCAGCGCTTATAC
TTACGTGTTTGAAATACAGGTGACGCTCTCTTATTCGGTTTCAAGGGTTT
GGATTTTTATCGAATAAAGGGAGCTTATTGAATGGGAGAACGTCGTTTAT
GAAACTTTGTTGTTGGCAGTGACTTTCAATATAATCAAACAATGGAGCGT
ATCTACAGAAGAACCTTAGAATTAGGGGACAAGCTGGAGTTTTTTACAAG
CTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATTCTGTTA
CTTTTTTCTAAAGAACGCGTCATCTCTATCACTTCAAATGACCAATTAGT
GAAGTATCTTGTAAAAACTCAACTCATCACAGAATTAGAGAGCGTAACGA
CCTCGTACAAGTTCGAATTAGAGATAGCCAACTGTACTTTCTTTTATTCA
GCCTTTATGTTGATGCGTGAATGTACAAAGCCAACAACAGTCAATGGCAT
CTCCTTTGAAAAAGGTGACGGAGTTCTCATCCCAACCTATTCGATGCATC
GAGATCCTAAAGTTTTCACTGATCCTGAACAATTCAATCCAGACCGGTTC
GAGTAAGTCCATCAAAGCTCATTTTGAACTTGAAAAACCCAGTGGAATAC
CAAAGTGTTGTCAGCCAATATTTCACTGTACCCTAAGCTCCCAAATAAAT
GTCTCCCCCGCTTATTAAGTCGAAAAGTTTTTGCCTATCTATCTAAGGTG
AAGTCGTCCTTCAGGTTTTTTTATAAAATATCCCATCATGGACCATCACT
TCAGGATTGCTCCCAAAGGGATAGAGAATGGTGTGATATTTCGGGAAATT
TGCGATCGTTATCCTAATGCTGCTTGTGGATGTGTGAATATGGAAAGATG
GAAAGATGGGTACCCTCCCTAGGAAGTGACATTCGGAGAAGGGATAAAAT
TAAAAAGGTTTTTTGAAATTTAGGTGCAAATACGGAAAATAATTGAAACT
TGAAAGGAATATATGAATCATAATTTTGTCCTTATATTTTATGCAGTTTT
CCTTTTCCCTGTGAGAAAATTTTCTTGCGCCTATTGTGAAAAATCACATC
ATCCAGTATCCAACCAGGATTACTCTGGGTGGGATAATGTTGGTGGGATA
TTTCTGGACATTTGCGGTCGTATCCTAAAACAGCTATGTAATTTATAAAA
TATCAGTGGATGAAATTGATAGACCCCTCAAAGTGTTCGAAATTATGTAC
AGTTCCAGAATTGTTGAGGTTTCAGAGTTTGTTGAATATAATATGTTTCA
AAGTTATATCAATGAGGATGTTTTGTAAGTGAAGTATTTTGTGGAGTATG
TAAAATTGTTTATTTTGATCAGCTTTTGGAAAAAATCCCAAGGCCAAGAG
AGTTAAAGGTGAGAATATGTAGAGTCTGTGTGAAAAATTGAAAATTAAAA
TAAGAAAAGAACTTTCTATGCTCTGGAGGTGGAGTATGCACAATATTTGC
ATATTTATTTGGTAGACTTGAGCGCCCCAAGACTGTGCAATTGAATAGAG
CTGTGGGAGAAAAATTCTGGTAGAATGTCTTTGGGGTGATAATAGACTAG
AATTGCAGATTTTATGCAATGAAGACTGCTGTAGCAGAAGATCTTAATGT
TAAAATGTGAAATTAAAATGAACAACAGATGAGATGGAGACACCCCCACC
AAGGGGGTGCCTGGAGACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCC
ACTCTAGAGTCACCCACCACTCCAACGCCCCCTTTCCTATTAGAACCACT
AGTTTAGCTAACACAAGCTGAATTGCTTTTAGGCTGCGCGCATCTCCGGT
TTTGATTTTGATATAGTGGATGCTGCGTATCATGTATAAAATTTCCGTCC
GAGATTTACCCTAATATTTACCCTGTTTCAATTTCATTTAAAAAGTTATA
AAAATTAGTGATTGTATTAACATCTAATCATTCAAATTTTTAATTGAAAT
TTGATGAAATTTAAAGATCTATCATATTACATATTACTTTATCAAGCTAA
TCAATTTTCAAAAATTCAAAAACAGAAAGACGGACGGGAATTTTATACAC
GATATGCTGCTCCGAGATCTAATAATTTCCAAAGGATCAAACTATTTCTA
TAATAAAGAGGAAAGATAAACATTTATCAAATTTGGCCAAATTTGACGTA
GATTTAAAAAATCAAATGCAAAAACAAAGGTTTTTGTCGTATTAAAAGTT
AAGGCCCTTTGGAGAACTACCGGTATCTCGACCACGCTACTATAAGTATA
CTATCGTAGTCGGCAGAGAACGTGTTCAAGATTCCCCATCTTTTGTAGAG
TAAAAACTATTTTTACACTTAGTTGTAAATGTAGTTTCAAAATAATTAAC
TATTTTAGGACCAAACCATCAAGACATTATTATCCGTTCGGTGACGGCTA
CCGTATGTGTCCGGGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTACT
TAGCTTCGATGTTGAAAAACTTTGATTTGTCACTTGTTGACGAGAACCAA
GAATTATGCGTCAAATCATACATTTCAGCTCAAACCACAATGGCGGTGGA
TGAACCAATCCAAATTCGTGTACAAAAAAGACGTCATTAGATGTAATTTA
TAATGTAACCAAGGATGTCCTATATCTACCATCGGTTAAATTTTGCAGAT
TTTTCGAATCCATGGAAACAATTGATGATCTGTTTTCTGGATGTTATATC
TCTGATCAACCTCTACACCAATACTTCATGACAAAGAGTACGAGTTTACT
TGTGTCTAATGACGGATGTTTGAAGTCATTGATGTGTTTTAATAGATACA
CTCTCTTGGACCCCCCTCCCCCTGACCCACTGGAAAGTTTTTCCAAATTT
TCGTCCCCGGTAGAAAAAAATACCCTAAAATTTCAGGCCTATTTGCTTTT
TTGACCGCTAAAAACAAAAGAATTTTATTCCCCATTGGCGGGAGTTCGAT
AGAGATTTTATCCCCACTGTGGGAAGAATTTCTAACGGGGCTTAGTGACA
GAGGTGTAGATACAGATATTTGACTCCGATAAGTCCGAACACAACCTTCT
TGTGAATTTCGGGTTAACTGGTATATTCGGTTAATGAAAGACTGTATTAT
AGTATGGCGCGCCAAAAGGCTATTTAATACTAACTTTTTTTATAATACCA
ACTTTTTTTTATAATATCAACTTTTTTTATAATATCAACTTTTTTTTTTA
TAATACCAACTTTTTTTTTTATAAAACCAACTTTTTTTTTATAGTACCAA
CTTTTTTTTTAGTTCAAAGTTTTTTCATAACACCAATTTTTGTCTCGCTT
ACTATGCGTGTATAATCGATCAAGTGTATTAAAATGAAAGTTGGTATTAT
AAAAAAAAAGTTGATATTATAAAAAAAGTTGGTATTATAAAAAAAAGCTG
GTATTATAAAAAAAAGTTAGTATTAAAAAGCCTTTTTGGCGCGCCATATT
ATAGCCTCACATTCGTAACAAAAGTTGTGCAGGTATCATAACATATCCAC
ATTAAAACGGAGTATGGGAGGTGTTGAAGAACCAAGAACTTTTGTATATG
GTTCATTGCAGAAGAAAAAGTTGGTAATATTTTGTTTGGTTAAATTCAAG
AAGGAATAAATTTATTTTAAAAAGACAATTATTTCTTCATTATGTTAATT
GTAAATAATCATGCATATATATAATCTTTAATATGGTGCTTATTAAAAAA
ACACATGAATCTTAAAATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005784XLOC_005784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010299-exon-sc0000104-1575043694:184571..184595TCONS_00010299-exon-sc0000104-1575043694:184571..184595Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1575043694:182618..183035TCONS_00010299-exon-sc0000104-1575043694:182618..183035Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1575043694:181803..182008TCONS_00010299-exon-sc0000104-1575043694:181803..182008Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1575043694:180219..180489TCONS_00010299-exon-sc0000104-1575043694:180219..180489Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1575043694:179282..179570TCONS_00010299-exon-sc0000104-1575043694:179282..179570Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1575043694:178544..178694TCONS_00010299-exon-sc0000104-1575043694:178544..178694Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1575043694:175374..176737TCONS_00010299-exon-sc0000104-1575043694:175374..176737Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:184571..184595TCONS_00010299-exon-sc0000104-1510915933:184571..184595Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:182618..183035TCONS_00010299-exon-sc0000104-1510915933:182618..183035Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:181803..182008TCONS_00010299-exon-sc0000104-1510915933:181803..182008Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:180219..180489TCONS_00010299-exon-sc0000104-1510915933:180219..180489Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:179282..179570TCONS_00010299-exon-sc0000104-1510915933:179282..179570Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:178544..178694TCONS_00010299-exon-sc0000104-1510915933:178544..178694Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1510915933:175374..176737TCONS_00010299-exon-sc0000104-1510915933:175374..176737Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:184571..184595TCONS_00010299-exon-sc0000104-1491911889:184571..184595Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:182618..183035TCONS_00010299-exon-sc0000104-1491911889:182618..183035Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:181803..182008TCONS_00010299-exon-sc0000104-1491911889:181803..182008Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:180219..180489TCONS_00010299-exon-sc0000104-1491911889:180219..180489Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:179282..179570TCONS_00010299-exon-sc0000104-1491911889:179282..179570Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:178544..178694TCONS_00010299-exon-sc0000104-1491911889:178544..178694Clytia hemisphaericaexon
TCONS_00010299-exon-sc0000104-1491911889:175374..176737TCONS_00010299-exon-sc0000104-1491911889:175374..176737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:175374..184595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.6954e-07	0.13713	0	0	0.00571555	0	1.25188	0.00461609	2.99941	2.4882	9.94172e-08	1.73523	7.55943e-06	1.41001e-07	0.239072	1.01708	1.16013e-06	1.23168	0.0239429	0.0420876	0.266156	6.62107e-05	0.0329876	0.022579	0.044441	4.60225e-09	3.05352	0.912239	2.8847	0.13082
Blast
[Close]
BLAST of TCONS_00010299 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 167.933 bits (424), Expect = 5.707e-44
Identity = 137/477 (28.72%), Postives = 239/477 (50.10%), Query Frame = 3 
Query:  207 HDRLSSWNLPGPKSSLLPIDLFKGHKNQHQLHLLLD-DYVKTYGETFAFNYKGQPVVATTDEDIIHKILWKE-FPNFENRKFFVEMPWPCQHMVTMAKGAKAKMIRNLLKAVLDAKSIKNNWAHFQEANQDVEELLRDAALNMLEVNSTSLANGYIMQIITKMAFSLDCSNQSDLNKQLVQLSHLFTR----PPTWLQSCSSLPIIGNLLK-LSPWGFNSSLHQFIKIATDIVVERRKEKNREPQ-DVLDVLLAAQ-SKDSN----ISTEILLAQAIVLLTVVHXXXXXXXXXXXXXXXKHKDVQRRLQQEIDSISMEDGFPSWEHLHKQLPYLGQVVNETLRLYPSAFMLMRECTKPTTVNGISFEKGDGVLIPTYSMHRDPKVFTDPEQFNPDRFETKPSRH-----YYPFGDGYRMCPGKEMALSEIKTYLASMLKNFDLSLVDENQELCVKSYISAQTTMAVDEPIQIRVQKR 1583
            H       +PGP     P+       + H+   + D +  K YG+ + F    QPV+A TD D+I  +L KE +  F NR+ F  + +  +  +++A+  + K +R+LL     +  +K       +    +   LR  A     V    +   Y M +IT  +F ++  + ++     V+ +    R     P +L S +  P +  +L+ L+   F   +  F++ +   + E R E  ++ + D L +++ +Q SK++     +S   L+AQ+I+ +   + +T++ +S   Y +A H DVQ++LQ+EID++      P+++ +  Q+ YL  VVNETLRL+P A  L R C K   +NG+   KG  V+IP+Y++HRDPK +T+PE+F P+RF  K   +     Y PFG G R C G   AL  +K  L  +L+NF      E Q   +   +S    +  ++P+ ++V+ R
Sbjct:   30 HGLFKKLGIPGPT----PLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF-MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFL-SITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVL-QMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00010299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A45.707e-4428.72Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
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