|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010305 ID=TCONS_00010305|Name=TCONS_00010305|organism=Clytia hemisphaerica|type=transcript|length=3673bpRun BLAST on NCBI protein sequence of TCONS_00010305-protein >TCONS_00010305-protein ID=TCONS_00010305-protein|Name=TCONS_00010305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1159bp MGVKGLWRLVASAGKPVSLESLNGKILAVDVSIWLNKAAKGMRDKRGNAIRun BLAST on NCBI transcript from alignment at sc0000104:192706..216560- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010305 ID=TCONS_00010305|Name=TCONS_00010305|organism=Clytia hemisphaerica|type=transcript|length=23855bp|location=Sequence derived from alignment at sc0000104:192706..216560- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:192706..216560- >TCONS_00010305 ID=TCONS_00010305|Name=TCONS_00010305|organism=Clytia hemisphaerica|type=CDS|length=3480bp|location=Sequence derived from alignment at sc0000104:192706..216560- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010305 vs. Swiss-Prot (Human)
Match: ERCC5 (DNA repair protein complementing XP-G cells OS=Homo sapiens GN=ERCC5 PE=1 SV=3) HSP 1 Score: 210.305 bits (534), Expect = 4.153e-55 Identity = 121/305 (39.67%), Postives = 179/305 (58.69%), Query Frame = 1
Query: 2134 IPMEDLIGLQKDLEKEHDRLEDTTKKLKRQAATLSDETYQDVQELLRLFGIPYLVSPAEAEAQCAQLDFSKLTDGSITDDSDIFLFGGHRVYKNIFDQKKYAEVXXXXXXXXXXXXTREKLIALAFMTGSDYTEGIRGIGAVTGMEVLHEFNKNKPKETLKFFRDWLRG----KIKDFNPGSNLKNKLRDVDMSQTFNSSLVWDAYLSPTVETSEEQFEWSNPDIDALKEYASEKLGWLYNKTDELLLPVLENMKKRKERQKTLMAYFQPKVEDDIETNIKSNRLKKVLSKMSSKDYTENEAGPS 3036
I +E+L L+ +L + + L+ ++ +R AAT++ + + + QELLRLFGIPY+ +P EAEAQCA LD + T G+ITDDSDI+LFG VY+N F++ K+ E Y D +L L R KLI LA++ GSDYTEGI +G VT ME+L+EF + + LKF W KI+ + +K KLR + ++ F + V +AYL P V+ S+ F W PD+D ++E+ GW KTDE L PVL+ + ++ + + + + E + IKS RL + ++ M K E EA S
Sbjct: 731 INLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVTCMLRK---EKEAAAS 1032 HSP 2 Score: 200.675 bits (509), Expect = 4.517e-52 Identity = 122/309 (39.48%), Postives = 193/309 (62.46%), Query Frame = 1
Query: 100 MGVKGLWRLVASAGKPVSLESLNGKILAVDVSIWLNKAAKGMRDKRGNAIYNAHLVLMFHRICKLLFYGIKPVFVFDGGVPXXXXXXXXXXXXXXSQADSNRKRTKDQILKNYLQTKALEAVTGVKSTTKL-QLRDKKEKEDIFKLPEQPVQNXXXXXXXXXXV------LNEDEWLRTLNESRVQLMFDKAEKLDTSSAEFNALPAEVKHELLTEIKDYQRRRYRRKNEAEVKLPQEAGTFSDFQLGNLMKRGQITHQIDELRKEMNSSMAAQFIELYHDVDQKKYKDKHIEGKRYVSNEKQGYVLIK 1005
MGV+GLW+L+ +G+ VS E+L GKILAVD+SIWLN+A KG+RD+ GN+I N HL+ +FHR+CKLLF+ I+P+FVFDG P LKK+TL RR+R+ A S+ ++T +++LK +L+ +A++ K L L + + D++ LP P+Q + SS ++D +N+ + L+ + F + +D S +F++LP EVKHE+LT++K++ +RR R EA +P+E+ FS +QL L+K+ + I+ ++KEMN + Y D + K +E +R VS + Y+LIK
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIKTAFRSKRDEALPSLTQVRRENDLYVLP--PLQEEEKHSSEEEDEKEWQERMNQKQALQ-------EEFFHNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRR-RTLFEA---MPEESDDFSQYQLKGLLKKNYLNQHIEHVQKEMNQQHSGHIRRQYED---EGGFLKEVESRRVVSEDTSHYILIK 293 The following BLAST results are available for this feature:
BLAST of TCONS_00010305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.