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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010312 ID=TCONS_00010312|Name=TCONS_00010312|organism=Clytia hemisphaerica|type=transcript|length=7310bpRun BLAST on NCBI protein sequence of TCONS_00010312-protein >TCONS_00010312-protein ID=TCONS_00010312-protein|Name=TCONS_00010312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1847bp MSIKILRCFCFYCSKLLVDKNNPKLAEILSKTGKGQPKKRFQHVYDLCKSRun BLAST on NCBI transcript from alignment at sc0000104:396655..419702- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010312 ID=TCONS_00010312|Name=TCONS_00010312|organism=Clytia hemisphaerica|type=transcript|length=23048bp|location=Sequence derived from alignment at sc0000104:396655..419702- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:396655..419702- >TCONS_00010312 ID=TCONS_00010312|Name=TCONS_00010312|organism=Clytia hemisphaerica|type=CDS|length=5544bp|location=Sequence derived from alignment at sc0000104:396655..419702- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010312 vs. Swiss-Prot (Human)
Match: RPB1 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A PE=1 SV=2) HSP 1 Score: 2215.27 bits (5739), Expect = 0.000e+0 Identity = 1071/1459 (73.41%), Postives = 1262/1459 (86.50%), Query Frame = 3
Query: 939 FGHLELAKPVYHVAFLTMSIKILRCFCFYCSKLLVDKNNPKLAEILSKTGKGQPKKRFQHVYDLCKSKTMCDDGDSVDVK-GNSESTGDGD--EKKSHGGCGRYQPQIRRQGLDLSAEWKHLNEDSQEKKIALTADRVFEIFKRITDEECIIIGMDPKWCRPDWLIXXXXXXXXXXXXXXXXMNGSARNQDDLTHKLADIIKANNQLRRNEMNGAAAHVIAQDMLMLQFHVATLVDNELPGLPRAQQKSGRPLKSVKQRLKSKEGRLRGNLMGKRVDFSARAVITPDPNLDIDQVGTPRTIAMNLTYPEIVTPFNIDRLQELVRRGPTQYPGAKYIIRDSGERIDLRFHPKPSDLHLQFGYKVERHIIDNDVVIFNRQPTLHKMSMMGHRVKVLPWSTFRLNLSVTTPYNADFDGDEMNMHVPQSMETRAEVTEIMMVPRQIITPQSNKPCMGIVQDSLCAVRKFTKRDAFLDKETVMNLLLWIRNWNGKVPIPCILKPKPLWTGKQIFSMLVPQGINSEGAHSAHPDDEKHGPYKHISPGDTKVLIENGVLLTGIICKKTVGTSGNSLVHIIMAERGPEVSKQFYGDLQKVTNNYFLVEGHSIGIGDCIADSETYQNIQNNIKKSKEQVMEVIEQAHSNQLEPTPGNTLRQTFENKVNRILNECRDQTGAEAQKSLSEFNNFXXXXXXXXXXXXINISQVIAVVGQQNVEGKRIPFGFRHRSLPHFNKDDYGPEARGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMESVMVAYDGTIRNSNRYVVQLLYGEDGMSGEHIEFQDIASIAPSHEAFNRAFYFDVTNERRLKNVMTEDVLRNVHSDSNTAQCIEEEFRQLKADRENLRLIFPSGSSRVALPVNLKRLIWNATKEFKVNTRAPTDLSPIKVVNDVRDLTKRLMVVKGDDHLSKEAQKNATMLFESKLRSTLCSKKVIEEYRLSSQAFDWLIGEIEARFNAAQANPGEMVGALAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLVGQPARDAERAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIQEDQDFVNVYYEMPDFDPSRISPWLLRIELDRKRMTDSKLTMEQIADKINQGFGDDLNCIFNDDNALKLVLRIRIMGSGEDKGNEEDGQLDSMDDDVFLRCIEANMLTDMTLQGIETVSKVYMHWPTENKKKRVIINPDGEFKHLPEWILETDGNGLMKVLSEKDIDPVRTTSNDICEIFQVLGIEAVRKSVEKEMDNVISFDGSYVNYRHLSLLCDIMTAKGHLMAITRHGINRQEVGALMRCSFEETVDVLVEAAFHSEVDRLRGVSENIILGQLPPIGTGCFNLLLDAEKCKEGMEIPLNIXXXXXXXXXXXXXXXXXXXXXXXXXXQMTPWNQGATPGYGEAWSPGLGSGMT 5306
FGH+ELAKPV+HV FL ++K+LRC CF+CSKLLVD NNPK+ +IL+K+ KGQPKKR HVYDLCK K +C+ G+ +D K G + GD D ++K HGGCGRYQP+IRR GL+L AEWKH+NEDSQEKKI L+ +RV EIFKRI+DEEC ++GM+P++ RP+W+IVTVLPVPP+ VRPAVVM GSARNQDDLTHKLADI+K NNQLRRNE NGAAAHVIA+D+ +LQFHVAT+VDNELPGLPRA QKSGRPLKS+KQRLK KEGR+RGNLMGKRVDFSAR VITPDPNL IDQVG PR+IA N+T+ EIVTPFNIDRLQELVRRG +QYPGAKYIIRD+G+RIDLRFHPKPSDLHLQ GYKVERH+ D D+VIFNRQPTLHKMSMMGHRV++LPWSTFRLNLSVTTPYNADFDGDEMN+H+PQS+ETRAE+ E+ MVPR I+TPQSN+P MGIVQD+L AVRKFTKRD FL++ VMNLL+++ W+GKVP P ILKP+PLWTGKQIFS+++P IN HS HPDDE GPYKHISPGDTKV++ENG L+ GI+CKK++GTS SLVHI E G ++++ FY ++Q V NN+ L+EGH+IGIGD IADS+TYQ+IQN IKK+K+ V+EVIE+AH+N+LEPTPGNTLRQTFEN+VNRILN+ RD+TG+ AQKSLSE+NNFKSMVVSG+KGSKINISQVIAVVGQQNVEGKRIPFGF+HR+LPHF KDDYGPE+RGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKT+ETGYIQRRLIK+MESVMV YD T+RNS VVQL YGEDG++GE +EFQ++A++ PS++AF + F FD TNER L+ + ED++++V S+++ +E EF +++ DRE LR+IFP+G S+V LP NL R+IWNA K F +N R P+DL PIKVV V++L+K+L++V GDD LS++AQ+NAT+LF LRSTLCS+++ EE+RLS +AFDWL+GEIE++FN A A+PGEMVGALAAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SKKPKTPSLTVFL+GQ ARDAERAKD+LCRLEHTTLRKVTANTAIYYDP+PQ+TV+ EDQ++VNVYYEMPDFD +RISPWLLR+ELDRK MTD KLTMEQIA+KIN GFGDDLNCIFNDDNA KLVLRIRIM S E+K EE+ +D MDDDVFLRCIE+NMLTDMTLQGIE +SKVYMH P + KK++II DGEFK L EWILETDG LM+VLSEKD+DPVRTTSNDI EIF VLGIEAVRK++E+E+ +VISFDGSYVNYRHL+LLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVDVL+EAA H E D ++GVSENI+LGQL P GTGCF+LLLDAEKCK GMEIP NI G P G F + + MTPWNQGATP YG AWSP +GSGMT
Sbjct: 85 FGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKS-KGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA-MTPWNQGATPAYG-AWSPSVGSGMT 1540 HSP 2 Score: 386.341 bits (991), Expect = 3.589e-108 Identity = 195/283 (68.90%), Postives = 238/283 (84.10%), Query Frame = 1
Query: 100 GTPSHSNA-PLKLVKRVQFGLLSPEEIKRMSVTDNGGIKYAETMEAGKYKIGGLMDPRQGTVDRMSRCQTCAGNMTECPGHFGHLELAKPVYHVAFLTMSIKILRCFCFYCSKLLVDKNNPKLAEILSKTGKGQPKKRFQHVYDLCKSKTMCDDGDSVDVK-GNSESTGDGD--EKKSHGGCGRYQPQIRRQGLDLSAEWKHLNEDSQEKKIALTADRVFEIFKRITDEECIIIGMDPKWCRPDWLIXXXXXXXXXXXXXXXXMNGSARNQDDLTHKLADIIK 936
G PS +A PL+ +KRVQFG+LSP+E+KRMSVT+ GGIKY ET E G+ K+GGLMDPRQG ++R RCQTCAGNMTECPGHFGH+ELAKPV+HV FL ++K+LRC CF+CSKLLVD NNPK+ +IL+K+ KGQPKKR HVYDLCK K +C+ G+ +D K G + GD D ++K HGGCGRYQP+IRR GL+L AEWKH+NEDSQEKKI L+ +RV EIFKRI+DEEC ++GM+P++ RP+W+IVTVLPVPP+ VRPAVVM GSARNQDDLTHKLADI+K
Sbjct: 5 GPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTE-GGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKS-KGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVK 285 The following BLAST results are available for this feature:
BLAST of TCONS_00010312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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