TCONS_00010323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010323
Unique NameTCONS_00010323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010323 ID=TCONS_00010323|Name=TCONS_00010323|organism=Clytia hemisphaerica|type=transcript|length=1064bp
ACGTAAAAGAAGGTGACCTGGGGTAGGTTTCTGGTGGGAGTTGAGACCAC
TAAGCAAACTCTTTAAAGACAgacaataaaaagaaacttaccaATGGCTG
GGGGTTGACAAGGTGTGAATTAAAATGTGTCCTCCACTCATCTTCATCAA
ATATTTGTTCATCTTTACAAATGCGACAAAAGAAGGAGATGCAAACGTAA
GGATTGTCCCATCCAAATATTTTATCTGTTGTTGTTGCATTGCCATATGT
GTCATCACTGTTTGGGTCAGCTTGtgtttgtctttttttatcagGTCCAG
AATTTGAGGAGTCTTTGCTGACTGGGTTGGTAGGAGGTACAGTAACTGGA
TAATCTTCGACAACCAGGTTAGCAAGTGGTTCAACAGCTGGAGGTTTTTG
AGTGACTGGGACAGGAGGAAGCTGAAAACCAAATATTATTGCCTTGAGTC
TAAATGTTCTGATCGCAGAGAGATGTCAAACTTTTCTCCAACACAACCCT
TTTCACAACACCaataaacttgaaaacttaCAAAAATATCTTAGAAAAAG
TTATTAAGATTTATCAAGTAATTTATATAAGTTATAAAACTTTTGTTACA
TGGTACAATGATAGCAGACATAAGCATAACTGTTGAACTTTGATAGAATT
TATATTTACCTGTGttggagaaaaaatgacatcCTCTCGCGAATCCAGTG
TTCAACAATAATCTTGTAAAAAGACATCCGCAAAGCTAAAATAATTGTTg
ttttcaaactcattttaagATGGGACCTGACAAGACTATGGCCCCTAAAA
ACTTACGACATATATTTCAGCTTACTGAAAGATACAGTAGTACAACATTC
TTTTTGACAAACAGTTAAAAAGAACCTAAAAATGTCTCAATAATTTTTGG
TTGAGATATTGTGCATTTATTATGCTTTGTCCTTTCATCTAAATCTATCA
TTAGTTTTACTGCCAAACTATTCCTGCCTAGTGTGTACCTTTAAGGGATT
AATTTCTGTGAGGattatattttgaaagttttctcgaaatctaatcCTCG
TGAAAATTGATCTT
Run BLAST on NCBI

transcript from alignment at sc0000104:452534..453681-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010323 ID=TCONS_00010323|Name=TCONS_00010323|organism=Clytia hemisphaerica|type=transcript|length=1148bp|location=Sequence derived from alignment at sc0000104:452534..453681- (Clytia hemisphaerica)
ACGTAAAAGAAGGTGACCTGGGGTAGGTTTCTGGTGGGAGTTGAGACCAC
TAAGCAAACTCTTTAAAGACAGACAATAAAAAGAAACTTACCAATGGCTG
GGGGTTGACAAGGTGTGAATTAAAATGTGTCCTCCACTCATCTTCATCAA
ATATTTGTTCATCTTTACAAATGCGACAAAAGAAGGAGATGCAAACGTAA
GGATTGTCCCATCCAAATATTTTATCTGTTGTTGTTGCATTGCCATATGT
GTCATCACTGTTTGGGTCAGCTTGTGTTTGTCTTTTTTTATCAGGTCCAG
AATTTGAGGAGTCTTTGCTGACTGGGTTGGTAGGAGGTACAGTAACTGGA
TAATCTTCGACAACCAGGTTAGCAAGTGGTTCAACAGCTGGATAATCTTT
GACAACCAAGTTAGCGAGAGGTTCAACAGCTGGATAATCTTTGACAACCA
AGTTAGCGAGAGGTTCAACAGCTGGAGGTTTTTGAGTGACTGGGACAGGA
GGAAGCTGAAAACCAAATATTATTGCCTTGAGTCTAAATGTTCTGATCGC
AGAGAGATGTCAAACTTTTCTCCAACACAACCCTTTTCACAACACCAATA
AACTTGAAAACTTACAAAAATATCTTAGAAAAAGTTATTAAGATTTATCA
AGTAATTTATATAAGTTATAAAACTTTTGTTACATGGTACAATGATAGCA
GACATAAGCATAACTGTTGAACTTTGATAGAATTTATATTTACCTGTGTT
GGAGAAAAAATGACATCCTCTCGCGAATCCAGTGTTCAACAATAATCTTG
TAAAAAGACATCCGCAAAGCTAAAATAATTGTTGTTTTCAAACTCATTTT
AAGATGGGACCTGACAAGACTATGGCCCCTAAAAACTTACGACATATATT
TCAGCTTACTGAAAGATACAGTAGTACAACATTCTTTTTGACAAACAGTT
AAAAAGAACCTAAAAATGTCTCAATAATTTTTGGTTGAGATATTGTGCAT
TTATTATGCTTTGTCCTTTCATCTAAATCTATCATTAGTTTTACTGCCAA
ACTATTCCTGCCTAGTGTGTACCTTTAAGGGATTAATTTCTGTGAGGATT
ATATTTTGAAAGTTTTCTCGAAATCTAATCCTCGTGAAAATTGATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005792XLOC_005792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010323-exon-sc0000104-1575043694:453304..453681TCONS_00010323-exon-sc0000104-1575043694:453304..453681Clytia hemisphaericaexon
TCONS_00010323-exon-sc0000104-1575043694:452534..453219TCONS_00010323-exon-sc0000104-1575043694:452534..453219Clytia hemisphaericaexon
TCONS_00010323-exon-sc0000104-1510915933:453304..453681TCONS_00010323-exon-sc0000104-1510915933:453304..453681Clytia hemisphaericaexon
TCONS_00010323-exon-sc0000104-1510915933:452534..453219TCONS_00010323-exon-sc0000104-1510915933:452534..453219Clytia hemisphaericaexon
TCONS_00010323-exon-sc0000104-1491911889:453304..453681TCONS_00010323-exon-sc0000104-1491911889:453304..453681Clytia hemisphaericaexon
TCONS_00010323-exon-sc0000104-1491911889:452534..453219TCONS_00010323-exon-sc0000104-1491911889:452534..453219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:452534..453681 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543426	1.20936	1.31409	0.615526	0.866029	0.772292	0.240216	0.935241	0.615821	0.603146	0.214927	1.47005	0.319066	0.849195	0.249679	0.319063	0.25322	0.49465	0.101039	0.330491	0.519564	1.15298	0.444655	0.5825	0.537773	0.427669	0.11474	0.356358	0.253628	0.707107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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