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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010354 ID=TCONS_00010354|Name=TCONS_00010354|organism=Clytia hemisphaerica|type=transcript|length=3099bp
ATGCCGTTTGATACGTATACGACCAAAAATGTGCCTGTAGCTAcgatgat
tttcaaaatttaaaaaatctttctcaaaaCAATTCtcatttcattagttt
tttgttcCAGCTTTGACTGTAAAACAAGGTCAACTCATCGCCTTTATCGA
TATCCCTTAGAGCAAAAACCGCCAACGTCTCTCCGATTAAAGATTGGACA
CAATTCGGATTTACATCATGATTAAAAAGACTGATTCTTAGCAACAACGC
TGTTCCCTCCTGTTCTTTAAGGCCTCCATATTCAGCCTCAATCCCCCATC
TGAAGACATTGGCATCCAAAACAGACTGGATATAACCTCTGGTTAGTCTG
GTCGTGTCAACACCGACTTCTGACGGAGTTTGAGGAAGAAACGGCGACAA
ATTAGGAGACAAAGAACGATATGCGAATCCTGGTAAATCTTCGATCAAAG
GGAGTGAATGGTGGTCAGATTCTAAGTATCGTTGGTGATAAAGCATTTGa
aatttccttcccaacaaACCATCATACTGGAAGAGATTAAGCAATTTGGA
AATGAGAGAATTTCGGTCAGcgaaattcacttttttgcccACTTCATGCG
ATTGAGTGAATTCCATACGATCGAACTTAAAGTTCGAATAAATCATGTGA
TCAACAACCAACAGAGTGCCAGCTTTTATCTTTGATGTAGCTACAAGACC
ACGCCCTTTTCCATCAATGTAAACATTTCTTAAGAGGTCTTTTGCGATAT
AATCGATATCGATATTCTCTTCCTCTTTCAAAAGTAGATGATTCATTTGA
TCTAAACTATCGGCCATAATAATCTTTGGTAGCAATTCAACTGAGATTCT
CTCAGGAGTTTTTTCAATATTCCAAAACTCTTCCAAAGACTTTCCCCCTC
CTTTTCCAGCAATCTCAGAGAGTTCTAACTCACCAAGCATCGAAAATGAT
TGGGTGATTGCGTATCTTGCTTTCTTATAAGCTTCAGATCCGTTCTTGGC
GATTCTTAAACATGCATTTGATGCAGAAATTGCGGTTTGGAACATTTGGG
TTTGGATTGAAGCTCGTGCAAGGTTGTTGAAGATTATAGAAAACTCCTCA
CTGTTTGGGAATTTGGAACGGCTCGTTTGTTGAGAATTTTTGTAGATCCC
TGGAAGCAACACAGACCATATGTTTTTTACATCTCCCTTTTCAGACACGA
TTTTCTCCAAGGATAGATTATAGGTCGATCTGGATGCTTCGTTCTTATTT
TCGATGAGCAAGACAGCAGCAGAATCAAACAAAGCTGCCATATAGTTTCC
GAGATTAAACTCAACTTGAGCTCGCTTTGCCAGAAATTTGATAAGATCAC
CAGACTGCTGTCTTAAGGCATCATAATAAACCTCAAAAGCTTGAAGGTGG
TTGCCTgctttgaaaagctttttccCTTCTTCACGAGCttcaagaaaatt
attaaactCCCCTTCTTTGTAAACTTGAATCTCTGCAGGAGAGTCGACTC
GAATACCATGGTTTCCATCTCGAAAGATCTTATAGAAAGGCTCACTGATT
CGGATTTTGGCACCCATTGGGAATTTCATGGCACTTGCTTGAACCTTAGA
TTCGTTATCCGGAACCATATTATACATGCCAAGTTGTATAAGTCTCCTTT
ATCATCTTCCATAAAGGTTGTTATGCCGGTCAAAACAGATGGTCTAGATA
TCAAGCGACCTTCGATGTACTTTCCAGTTGCTGTTTGAAAGAGCTCTAAa
tctttgatttgaatttttgacaatttacTAAAATCATTTGAAACTTGATC
CAAACTTTTGACTGTTGACGAATCAGTGTTGACAGTTCGGAAATATTGTT
CGTTGCTGGAAGGGTTCGGTTTAATTGGTTCCANTTGAGAATTTTTGTAG
ATCCCTGGAAGCAACACAGACCATATGTTTTTTACATCTCCCTTTTCAGA
CACGATTTTCTCCAAGGATAGATTATAGGTCGATCTGGATGCTTCGTTCT
TATTTTCGATGAGCAAGACAGCAGCAGAATCAAACAAAGCTGCCATATAG
TTTCCGAGATTAAACTCAACTTGAGCTCGCTTTGCCAGAAATTTGATAAG
ATCACCAGACTGCTGTCTTAAGGCATCATAATAAACCTCAAAAGCTTGAA
GGTGGTTGCCTgctttgaaaagctttttccCTTCTTCACGAGCttcaaga
aaattattaaactCCCCTTCTTTGTAAACTTGAATCTCTGCAGGAGAGTC
GACTCGAATACCATGGTTTCCATCTCGAAAGATCTTATAGAAAGGCTCAC
TGATTCGGATTTTGGCACCCATTGGGAATTTCATGGCACTTGCTTGAACC
TTAGATTCGTTATCCGGAACCATATTATACATGCCAAGTTGTATAAGTCT
CCTTTATCATCTTCCATAAAGGTTGTTATGCCGGTCAAAACAGATGGTCT
AGATATCAAGCGACCTTCGATGTACTTTCCAGTTGCTGTTTGAAAGAGCT
CTAAatctttgatttgaatttttgacaatttacTAAAATCGTTTGAAACT
TGATCCAAACTTTTGACTGTTGACGAATCAGTGTTGACAGTTCGGAAATA
TTGTTCGTTGCTGGAAGGGTTCGGTTTAATTGGTTCCCGGATGTTTGCTT
CCCGGATGTTTGCTTCATGCTTAGCTAGTTgcaaaaatttaggttttttc
AAACCCCAGATTCGTAAAAGTTCTTTCACCTCAGTTAAATCGTTTAATAA
TGACATCTTGGGGTTTTCACTCAGTACAGCTTCTATTAACATTTCGTCAG
CCTTTGGGTATGCTATCGAATGGTGCTGAGAAACTTGGAGATCTAACCCG
GCTTTATTTGCAAGTTTACGCATTTCAGACATCTGGAAACTTTGAAAACA
ATCGGCCATGACTTTTCCTTTGAACGcagatatgaatttttctttggttt
gatcATCTTTCAAGCGTTCATATTCTTCCACAATATCACCATTACAATAA
GTTTTCAGAACGTTAACCCAAATATTCAGACTCGCCATTTTTGTTTGTCA
GCACACACCATTTAACAACGTATATTACACTCTATAAATTCATTCAAAA Run BLAST on NCBI protein sequence of TCONS_00010354-protein >TCONS_00010354-protein ID=TCONS_00010354-protein|Name=TCONS_00010354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MYNMVPDNESKVQASAMKFPMGAKIRISEPFYKIFRDGNHGIRVDSPAEI
QVYKEGEFNNFLEAREEGKKLFKAGNHLQAFEVYYDALRQQSGDLIKFLA
KRAQVEFNLGNYMAALFDSAAVLLIENKNEASRSTYNLSLEKIVSEKGDV
KNIWSVLLPGIYKNSQQTSRSKFPNSEEFSIIFNNLARASIQTQMFQTAI
SASNACLRIAKNGSEAYKKARYAITQSFSMLGELELSEIAGKGGGKSLEE
FWNIEKTPERISVELLPKIIMADSLDQMNHLLLKEEENIDIDYIAKDLLR
NVYIDGKGRGLVATSKIKAGTLLVVDHMIYSNFKFDRMEFTQSHEVGKKV
NFADRNSLISKLLNLFQYDGLLGRKFQMLYHQRYLESDHHSLPLIEDLPG
FAYRSLSPNLSPFLPQTPSEVGVDTTRLTRGYIQSVLDANVFRWGIEAEY
GGLKEQEGTALLLRISLFNHDVNPNCVQSLIGETLAVFALRDIDKGDELT
LFYSQSWNKKLMK Run BLAST on NCBI transcript from alignment at sc0000104:273418..276516 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010354 ID=TCONS_00010354|Name=TCONS_00010354|organism=Clytia hemisphaerica|type=transcript|length=3099bp|location=Sequence derived from alignment at sc0000104:273418..276516 (Clytia hemisphaerica)
TTTTGAATGAATTTATAGAGTGTAATATACGTTGTTAAATGGTGTGTGCT
GACAAACAAAAATGGCGAGTCTGAATATTTGGGTTAACGTTCTGAAAACT
TATTGTAATGGTGATATTGTGGAAGAATATGAACGCTTGAAAGATgatca
aaccaaagaaaaattcatatctgCGTTCAAAGGAAAAGTCATGGCCGATT
GTTTTCAAAGTTTCCAGATGTCTGAAATGCGTAAACTTGCAAATAAAGCC
GGGTTAGATCTCCAAGTTTCTCAGCACCATTCGATAGCATACCCAAAGGC
TGACGAAATGTTAATAGAAGCTGTACTGAGTGAAAACCCCAAGATGTCAT
TATTAAACGATTTAACTGAGGTGAAAGAACTTTTACGAATCTGGGGTTTg
aaaaaacctaaatttttgcAACTAGCTAAGCATGAAGCAAACATCCGGGA
AGCAAACATCCGGGAACCAATTAAACCGAACCCTTCCAGCAACGAACAAT
ATTTCCGAACTGTCAACACTGATTCGTCAACAGTCAAAAGTTTGGATCAA
GTTTCAAACGATTTTAgtaaattgtcaaaaattcaaatcaaagatTTAGA
GCTCTTTCAAACAGCAACTGGAAAGTACATCGAAGGTCGCTTGATATCTA
GACCATCTGTTTTGACCGGCATAACAACCTTTATGGAAGATGATAAAGGA
GACTTATACAACTTGGCATGTATAATATGGTTCCGGATAACGAATCTAAG
GTTCAAGCAAGTGCCATGAAATTCCCAATGGGTGCCAAAATCCGAATCAG
TGAGCCTTTCTATAAGATCTTTCGAGATGGAAACCATGGTATTCGAGTCG
ACTCTCCTGCAGAGATTCAAGTTTACAAAGAAGGGGagtttaataatttt
cttgaaGCTCGTGAAGAAGggaaaaagcttttcaaagcAGGCAACCACCT
TCAAGCTTTTGAGGTTTATTATGATGCCTTAAGACAGCAGTCTGGTGATC
TTATCAAATTTCTGGCAAAGCGAGCTCAAGTTGAGTTTAATCTCGGAAAC
TATATGGCAGCTTTGTTTGATTCTGCTGCTGTCTTGCTCATCGAAAATAA
GAACGAAGCATCCAGATCGACCTATAATCTATCCTTGGAGAAAATCGTGT
CTGAAAAGGGAGATGTAAAAAACATATGGTCTGTGTTGCTTCCAGGGATC
TACAAAAATTCTCAANTGGAACCAATTAAACCGAACCCTTCCAGCAACGA
ACAATATTTCCGAACTGTCAACACTGATTCGTCAACAGTCAAAAGTTTGG
ATCAAGTTTCAAATGATTTTAgtaaattgtcaaaaattcaaatcaaagat
TTAGAGCTCTTTCAAACAGCAACTGGAAAGTACATCGAAGGTCGCTTGAT
ATCTAGACCATCTGTTTTGACCGGCATAACAACCTTTATGGAAGATGATA
AAGGAGACTTATACAACTTGGCATGTATAATATGGTTCCGGATAACGAAT
CTAAGGTTCAAGCAAGTGCCATGAAATTCCCAATGGGTGCCAAAATCCGA
ATCAGTGAGCCTTTCTATAAGATCTTTCGAGATGGAAACCATGGTATTCG
AGTCGACTCTCCTGCAGAGATTCAAGTTTACAAAGAAGGGGagtttaata
attttcttgaaGCTCGTGAAGAAGggaaaaagcttttcaaagcAGGCAAC
CACCTTCAAGCTTTTGAGGTTTATTATGATGCCTTAAGACAGCAGTCTGG
TGATCTTATCAAATTTCTGGCAAAGCGAGCTCAAGTTGAGTTTAATCTCG
GAAACTATATGGCAGCTTTGTTTGATTCTGCTGCTGTCTTGCTCATCGAA
AATAAGAACGAAGCATCCAGATCGACCTATAATCTATCCTTGGAGAAAAT
CGTGTCTGAAAAGGGAGATGTAAAAAACATATGGTCTGTGTTGCTTCCAG
GGATCTACAAAAATTCTCAACAAACGAGCCGTTCCAAATTCCCAAACAGT
GAGGAGTTTTCTATAATCTTCAACAACCTTGCACGAGCTTCAATCCAAAC
CCAAATGTTCCAAACCGCAATTTCTGCATCAAATGCATGTTTAAGAATCG
CCAAGAACGGATCTGAAGCTTATAAGAAAGCAAGATACGCAATCACCCAA
TCATTTTCGATGCTTGGTGAGTTAGAACTCTCTGAGATTGCTGGAAAAGG
AGGGGGAAAGTCTTTGGAAGAGTTTTGGAATATTGAAAAAACTCCTGAGA
GAATCTCAGTTGAATTGCTACCAAAGATTATTATGGCCGATAGTTTAGAT
CAAATGAATCATCTACTTTTGAAAGAGGAAGAGAATATCGATATCGATTA
TATCGCAAAAGACCTCTTAAGAAATGTTTACATTGATGGAAAAGGGCGTG
GTCTTGTAGCTACATCAAAGATAAAAGCTGGCACTCTGTTGGTTGTTGAT
CACATGATTTATTCGAACTTTAAGTTCGATCGTATGGAATTCACTCAATC
GCATGAAGTgggcaaaaaagtgaatttcgCTGACCGAAATTCTCTCATTT
CCAAATTGCTTAATCTCTTCCAGTATGATGGTttgttgggaaggaaattt
CAAATGCTTTATCACCAACGATACTTAGAATCTGACCACCATTCACTCCC
TTTGATCGAAGATTTACCAGGATTCGCATATCGTTCTTTGTCTCCTAATT
TGTCGCCGTTTCTTCCTCAAACTCCGTCAGAAGTCGGTGTTGACACGACC
AGACTAACCAGAGGTTATATCCAGTCTGTTTTGGATGCCAATGTCTTCAG
ATGGGGGATTGAGGCTGAATATGGAGGCCTTAAAGAACAGGAGGGAACAG
CGTTGTTGCTAAGAATCAGTCTTTTTAATCATGATGTAAATCCGAATTGT
GTCCAATCTTTAATCGGAGAGACGTTGGCGGTTTTTGCTCTAAGGGATAT
CGATAAAGGCGATGAGTTGACCTTGTTTTACAGTCAAAGCTGgaacaaaa
aactaatgaaatgaGAATTGttttgagaaagattttttaaattttgaaaa
tcatcgTAGCTACAGGCACATTTTTGGTCGTATACGTATCAAACGGCAT Coding sequence (CDS) from alignment at sc0000104:273418..276516 >TCONS_00010354 ID=TCONS_00010354|Name=TCONS_00010354|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at sc0000104:273418..276516 (Clytia hemisphaerica)
ATGTATAATATGGTTCCGGATAACGAATCTAAGGTTCAAGCAAGTGCCAT
GAAATTCCCAATGGGTGCCAAAATCCGAATCAGTGAGCCTTTCTATAAGA
TCTTTCGAGATGGAAACCATGGTATTCGAGTCGACTCTCCTGCAGAGATT
CAAGTTTACAAAGAAGGGGagtttaataattttcttgaaGCTCGTGAAGA
AGggaaaaagcttttcaaagcAGGCAACCACCTTCAAGCTTTTGAGGTTT
ATTATGATGCCTTAAGACAGCAGTCTGGTGATCTTATCAAATTTCTGGCA
AAGCGAGCTCAAGTTGAGTTTAATCTCGGAAACTATATGGCAGCTTTGTT
TGATTCTGCTGCTGTCTTGCTCATCGAAAATAAGAACGAAGCATCCAGAT
CGACCTATAATCTATCCTTGGAGAAAATCGTGTCTGAAAAGGGAGATGTA
AAAAACATATGGTCTGTGTTGCTTCCAGGGATCTACAAAAATTCTCAACA
AACGAGCCGTTCCAAATTCCCAAACAGTGAGGAGTTTTCTATAATCTTCA
ACAACCTTGCACGAGCTTCAATCCAAACCCAAATGTTCCAAACCGCAATT
TCTGCATCAAATGCATGTTTAAGAATCGCCAAGAACGGATCTGAAGCTTA
TAAGAAAGCAAGATACGCAATCACCCAATCATTTTCGATGCTTGGTGAGT
TAGAACTCTCTGAGATTGCTGGAAAAGGAGGGGGAAAGTCTTTGGAAGAG
TTTTGGAATATTGAAAAAACTCCTGAGAGAATCTCAGTTGAATTGCTACC
AAAGATTATTATGGCCGATAGTTTAGATCAAATGAATCATCTACTTTTGA
AAGAGGAAGAGAATATCGATATCGATTATATCGCAAAAGACCTCTTAAGA
AATGTTTACATTGATGGAAAAGGGCGTGGTCTTGTAGCTACATCAAAGAT
AAAAGCTGGCACTCTGTTGGTTGTTGATCACATGATTTATTCGAACTTTA
AGTTCGATCGTATGGAATTCACTCAATCGCATGAAGTgggcaaaaaagtg
aatttcgCTGACCGAAATTCTCTCATTTCCAAATTGCTTAATCTCTTCCA
GTATGATGGTttgttgggaaggaaatttCAAATGCTTTATCACCAACGAT
ACTTAGAATCTGACCACCATTCACTCCCTTTGATCGAAGATTTACCAGGA
TTCGCATATCGTTCTTTGTCTCCTAATTTGTCGCCGTTTCTTCCTCAAAC
TCCGTCAGAAGTCGGTGTTGACACGACCAGACTAACCAGAGGTTATATCC
AGTCTGTTTTGGATGCCAATGTCTTCAGATGGGGGATTGAGGCTGAATAT
GGAGGCCTTAAAGAACAGGAGGGAACAGCGTTGTTGCTAAGAATCAGTCT
TTTTAATCATGATGTAAATCCGAATTGTGTCCAATCTTTAATCGGAGAGA
CGTTGGCGGTTTTTGCTCTAAGGGATATCGATAAAGGCGATGAGTTGACC
TTGTTTTACAGTCAAAGCTGgaacaaaaaactaatgaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010354-exon-sc0000104-1491911889:273418..276516 | TCONS_00010354-exon-sc0000104-1491911889:273418..276516 | Clytia hemisphaerica | exon |
| TCONS_00010354-exon-sc0000104-1510915933:273418..276516 | TCONS_00010354-exon-sc0000104-1510915933:273418..276516 | Clytia hemisphaerica | exon |
| TCONS_00010354-exon-sc0000104-1575043694:273418..276516 | TCONS_00010354-exon-sc0000104-1575043694:273418..276516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:273418..276516 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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