TCONS_00010355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010355
Unique NameTCONS_00010355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010355 ID=TCONS_00010355|Name=TCONS_00010355|organism=Clytia hemisphaerica|type=transcript|length=442bp
GATTTACAAGGATTCGCATATCGTTCTTTATCTTCTAATTTGTCGCCGTT
TCTTCCTCAAACTCCGTCAGAAGTCGGTGTTGACACGACCAGGCTAACCA
GAGGTTATATCCAGTCTGTTTTGGATGCTAATGTTTTTGGATGGGGGAAA
GAGGCTGAATATGGAGGCCATAAAGATCAAAAAGGCACAGCGTTGTTGCT
AAGAATCAGTCTTTTTAATCATGATGCAAATCCGAACTGTGTCCAGTTCT
TTATCGGAAACACGTTGGCGGTTTTTGCTCGAAGAGATATCCATGAAGGC
GATGAGTTGACCTTGTTTTACAGTCAGAGCTGGAACGAAACACTAATGAA
ATGAGAATTGTTTTGAGAAAGATGTTTTAaacttttgacattttgaaaat
catCGTAACTACAGGCACATTTTTGGTCATATACGTACAAAT
Run BLAST on NCBI

protein sequence of TCONS_00010355-protein

>TCONS_00010355-protein ID=TCONS_00010355-protein|Name=TCONS_00010355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
DLQGFAYRSLSSNLSPFLPQTPSEVGVDTTRLTRGYIQSVLDANVFGWGK
EAEYGGHKDQKGTALLLRISLFNHDANPNCVQFFIGNTLAVFARRDIHEG
DELTLFYSQSWNETLMK
Run BLAST on NCBI

transcript from alignment at sc0000104:280888..281329

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010355 ID=TCONS_00010355|Name=TCONS_00010355|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at sc0000104:280888..281329 (Clytia hemisphaerica)
ATTTGTACGTATATGACCAAAAATGTGCCTGTAGTTACGatgattttcaa
aatgtcaaaagttTAAAACATCTTTCTCAAAACAATTCTCATTTCATTAG
TGTTTCGTTCCAGCTCTGACTGTAAAACAAGGTCAACTCATCGCCTTCAT
GGATATCTCTTCGAGCAAAAACCGCCAACGTGTTTCCGATAAAGAACTGG
ACACAGTTCGGATTTGCATCATGATTAAAAAGACTGATTCTTAGCAACAA
CGCTGTGCCTTTTTGATCTTTATGGCCTCCATATTCAGCCTCTTTCCCCC
ATCCAAAAACATTAGCATCCAAAACAGACTGGATATAACCTCTGGTTAGC
CTGGTCGTGTCAACACCGACTTCTGACGGAGTTTGAGGAAGAAACGGCGA
CAAATTAGAAGATAAAGAACGATATGCGAATCCTTGTAAATC

Coding sequence (CDS) from alignment at sc0000104:280888..281329

>TCONS_00010355 ID=TCONS_00010355|Name=TCONS_00010355|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000104:280888..281329 (Clytia hemisphaerica)
TCATTTCATTAGTGTTTCGTTCCAGCTCTGACTGTAAAACAAGGTCAACT
CATCGCCTTCATGGATATCTCTTCGAGCAAAAACCGCCAACGTGTTTCCG
ATAAAGAACTGGACACAGTTCGGATTTGCATCATGATTAAAAAGACTGAT
TCTTAGCAACAACGCTGTGCCTTTTTGATCTTTATGGCCTCCATATTCAG
CCTCTTTCCCCCATCCAAAAACATTAGCATCCAAAACAGACTGGATATAA
CCTCTGGTTAGCCTGGTCGTGTCAACACCGACTTCTGACGGAGTTTGAGG
AAGAAACGGCGACAAATTAGAAGATAAAGAACGATATGCGAATCCTTGTA
AATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005814XLOC_005814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010355-exon-sc0000104-1491911889:280888..281329TCONS_00010355-exon-sc0000104-1491911889:280888..281329Clytia hemisphaericaexon
TCONS_00010355-exon-sc0000104-1510915933:280888..281329TCONS_00010355-exon-sc0000104-1510915933:280888..281329Clytia hemisphaericaexon
TCONS_00010355-exon-sc0000104-1575043694:280888..281329TCONS_00010355-exon-sc0000104-1575043694:280888..281329Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010355-proteinTCONS_00010355-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:280888..281329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.162261	0.391521	0.366538	0.558674	2.08206	0	0.663837	2.20818	0.210333	4.23699	3.37989	2.00195	2.00259	5.39447	2.88249	1.23815	1.22825	2.52349	2.25037	7.06002	4.50205	3.55005	2.49021	0.938525	0.190563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top