TCONS_00010357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010357
Unique NameTCONS_00010357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010357 ID=TCONS_00010357|Name=TCONS_00010357|organism=Clytia hemisphaerica|type=transcript|length=577bp
CCCACATTTTATGTCTACATATTTCTTCAAGTGGCAGTAGTTATTCCTTT
TAAATCACATACGAAATCATGTCTTTCTGGCTCGAAATGTATTATTTTAA
GCATTTTGATAGGAAAATTCCGAACAATAATTCGATTTTGAAAAGTGGAC
ATGTCTGGGACATCTAACCGTACAGTTTTAAGAACAGTGAACAAAAAGAA
CGAGATCTAGCTTAACAAATTATAAAGACATCTTCACACATCTCCTCTGT
TTGCAAACTACAGCCTTTATAACGTATACNTTTATGCGTCATTTAGTCGT
TAAGTTAAATAACAAGTCATAGTTCTGGTTCAAATCTTTCAGATatcaat
cttataaaaaaatatcaaatgttttcaatatttatttgcTAACAATCCTT
AAATATGAGCTGACAGTAGTAAATCGATTCTCGtctattttattttgttg
ttattataaatcattatttttacatagtaTGAATATTGCATATGTCCGAA
AGTCATTTTATCCCCAATATTCTACAAGCAAGGATATATTCCAATCTGAC
CTGCCGTTTTGTCATTTTCTTTAAANN
Run BLAST on NCBI

transcript from alignment at sc0000104:304696..305272

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010357 ID=TCONS_00010357|Name=TCONS_00010357|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at sc0000104:304696..305272 (Clytia hemisphaerica)
NNTTTAAAGAAAATGACAAAACGGCAGGTCAGATTGGAATATATCCTTGC
TTGTAGAATATTGGGGATAAAATGACTTTCGGACATATGCAATATTCAta
ctatgtaaaaataatgatttataataacaacaaaataaaatagaCGAGAA
TCGATTTACTACTGTCAGCTCATATTTAAGGATTGTTAgcaaataaatat
tgaaaacatttgatatttttttataagattgatATCTGAAAGATTTGAAC
CAGAACTATGACTTGTTATTTAACTTAACGACTAAATGACGCATAAANGT
ATACGTTATAAAGGCTGTAGTTTGCAAACAGAGGAGATGTGTGAAGATGT
CTTTATAATTTGTTAAGCTAGATCTCGTTCTTTTTGTTCACTGTTCTTAA
AACTGTACGGTTAGATGTCCCAGACATGTCCACTTTTCAAAATCGAATTA
TTGTTCGGAATTTTCCTATCAAAATGCTTAAAATAATACATTTCGAGCCA
GAAAGACATGATTTCGTATGTGATTTAAAAGGAATAACTACTGCCACTTG
AAGAAATATGTAGACATAAAATGTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005816XLOC_005816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010357-exon-sc0000104-1491911889:304696..305272TCONS_00010357-exon-sc0000104-1491911889:304696..305272Clytia hemisphaericaexon
TCONS_00010357-exon-sc0000104-1510915933:304696..305272TCONS_00010357-exon-sc0000104-1510915933:304696..305272Clytia hemisphaericaexon
TCONS_00010357-exon-sc0000104-1575043694:304696..305272TCONS_00010357-exon-sc0000104-1575043694:304696..305272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:304696..305272 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.70888	2.3834	1.01046	0.211626	0	0	0.273776	0.546521	0.1856	0.386528	0	0.128413	0.0641172	0.133173	0.054743	0.0587477	0	0.0741793	0	0	0	0.136396	2.04196	1.44031	0	0	0.0670097	0	1.84282	1.23153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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