TCONS_00010358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010358
Unique NameTCONS_00010358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010358 ID=TCONS_00010358|Name=TCONS_00010358|organism=Clytia hemisphaerica|type=transcript|length=241bp
GtccaccaaaacaaaacaaaaaacaaccaaaatctaACAAAAGCTCTTCA
CTACTTGCCCTTCTTGAATCCGAAATTTGCTTTGTCATTGAAGCGCCAAA
ACTataaataaaaatagtttttgacGGTCGGCGCAGCAgacattttcatg
ctaaatttctGTTCAGTCGGGACGAACATAATTCTTGACCAAGCGAAGAT
ATAGCCATTGAACCCGACTGttgtcggcacatcaaagggcc
Run BLAST on NCBI

transcript from alignment at sc0000104:316713..316953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010358 ID=TCONS_00010358|Name=TCONS_00010358|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at sc0000104:316713..316953 (Clytia hemisphaerica)
ggccctttgatgtgccgacaaCAGTCGGGTTCAATGGCTATATCTTCGCT
TGGTCAAGAATTATGTTCGTCCCGACTGAACagaaatttagcatgaaaat
gtcTGCTGCGCCGACCgtcaaaaactatttttatttatAGTTTTGGCGCT
TCAATGACAAAGCAAATTTCGGATTCAAGAAGGGCAAGTAGTGAAGAGCT
TTTGTtagattttggttgttttttgttttgttttggtggaC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005817XLOC_005817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010358-exon-sc0000104-1491911889:316713..316953TCONS_00010358-exon-sc0000104-1491911889:316713..316953Clytia hemisphaericaexon
TCONS_00010358-exon-sc0000104-1510915933:316713..316953TCONS_00010358-exon-sc0000104-1510915933:316713..316953Clytia hemisphaericaexon
TCONS_00010358-exon-sc0000104-1575043694:316713..316953TCONS_00010358-exon-sc0000104-1575043694:316713..316953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:316713..316953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.885097	1.74923	3.69247	4.9675	6.82243	9.36417	5.25609	7.8088	6.63287	3.48646	4.48361	6.19699	6.60459	5.74772	0	1.07871	1.78054	3.50252	13.0181	2.3626	0.311008	3.36926	0.460235	0.516856	6.62803	12.7891	0	0.218723	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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