TCONS_00010367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010367
Unique NameTCONS_00010367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010367 ID=TCONS_00010367|Name=TCONS_00010367|organism=Clytia hemisphaerica|type=transcript|length=622bp
CGAAAATTAAAATAATGGATAGAAAATTATTAATCTTGCTGGTATGTGCT
GTAGGAGTGTTCATTTTACTTGCTGCCGCTACTGGTGGTAACGAATGGTT
GAATAAAACACGGGGTGCCAGTGAAGGTTTATGGAAATCTTGTGGTGGTA
CATTATGTTTTGAAGTCCAATCTGATGACTCTAAATTCAATGCTACCCGT
GCGTTTGCAATCATTGCTGTCCTCGCGGCCGCTGGTGGAACCGTAGTGTC
GATTTTACGGTTATTTAAAGAGCTTGATGTGAAATTGTTTCCAATATGTT
TTATAGTGGCTGGTGTTTGTATGATGATCGCCATGTCTATCTATACTGAC
TTCATGGATCCagtattgaaaattttcgattCTTGGGGTTGGGGTTGGTC
TTACATCTTTGGCTGGCTTGGATGTGTTGCATCCTTTGTTTTAGCTGGAT
TGGCTATGTTCTTCAAATAAACAGAGCTATGCGGCACCCATATTTGACAT
GTACTTAGCGTCTAAATAACGGCTATTTGACGTTCATAACAACCGCATAT
GGACGTCAAAAGTAGCAAATCGAAGTTTAGAATTTccatttcgatatttt
ttagtAGAGCACTGAACCTTAT
Run BLAST on NCBI

protein sequence of TCONS_00010367-protein

>TCONS_00010367-protein ID=TCONS_00010367-protein|Name=TCONS_00010367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
KIKIMDRKLLILLVCAVGVFILLAAATGGNEWLNKTRGASEGLWKSCGGT
LCFEVQSDDSKFNATRAFAIIAVLAAAGGTVVSILRLFKELDVKLFPICF
IVAGVCMMIAMSIYTDFMDPVLKIFDSWGWGWSYIFGWLGCVASFVLAGL
AMFFK
Run BLAST on NCBI

transcript from alignment at sc0000104:514522..515143

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010367 ID=TCONS_00010367|Name=TCONS_00010367|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0000104:514522..515143 (Clytia hemisphaerica)
ATAAGGTTCAGTGCTCTactaaaaaatatcgaaatggAAATTCTAAACTT
CGATTTGCTACTTTTGACGTCCATATGCGGTTGTTATGAACGTCAAATAG
CCGTTATTTAGACGCTAAGTACATGTCAAATATGGGTGCCGCATAGCTCT
GTTTATTTGAAGAACATAGCCAATCCAGCTAAAACAAAGGATGCAACACA
TCCAAGCCAGCCAAAGATGTAAGACCAACCCCAACCCCAAGaatcgaaaa
ttttcaatactGGATCCATGAAGTCAGTATAGATAGACATGGCGATCATC
ATACAAACACCAGCCACTATAAAACATATTGGAAACAATTTCACATCAAG
CTCTTTAAATAACCGTAAAATCGACACTACGGTTCCACCAGCGGCCGCGA
GGACAGCAATGATTGCAAACGCACGGGTAGCATTGAATTTAGAGTCATCA
GATTGGACTTCAAAACATAATGTACCACCACAAGATTTCCATAAACCTTC
ACTGGCACCCCGTGTTTTATTCAACCATTCGTTACCACCAGTAGCGGCAG
CAAGTAAAATGAACACTCCTACAGCACATACCAGCAAGATTAATAATTTT
CTATCCATTATTTTAATTTTCG

Coding sequence (CDS) from alignment at sc0000104:514522..515143

>TCONS_00010367 ID=TCONS_00010367|Name=TCONS_00010367|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000104:514522..515143 (Clytia hemisphaerica)
TTATTTGAAGAACATAGCCAATCCAGCTAAAACAAAGGATGCAACACATC
CAAGCCAGCCAAAGATGTAAGACCAACCCCAACCCCAAGaatcgaaaatt
ttcaatactGGATCCATGAAGTCAGTATAGATAGACATGGCGATCATCAT
ACAAACACCAGCCACTATAAAACATATTGGAAACAATTTCACATCAAGCT
CTTTAAATAACCGTAAAATCGACACTACGGTTCCACCAGCGGCCGCGAGG
ACAGCAATGATTGCAAACGCACGGGTAGCATTGAATTTAGAGTCATCAGA
TTGGACTTCAAAACATAATGTACCACCACAAGATTTCCATAAACCTTCAC
TGGCACCCCGTGTTTTATTCAACCATTCGTTACCACCAGTAGCGGCAGCA
AGTAAAATGAACACTCCTACAGCACATACCAGCAAGATTAATAATTTTCT
ATCCATTATTTTAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005826XLOC_005826Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010367-proteinTCONS_00010367-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010367-exon-sc0000104-1491911889:514522..515143TCONS_00010367-exon-sc0000104-1491911889:514522..515143Clytia hemisphaericaexon
TCONS_00010367-exon-sc0000104-1510915933:514522..515143TCONS_00010367-exon-sc0000104-1510915933:514522..515143Clytia hemisphaericaexon
TCONS_00010367-exon-sc0000104-1575043694:514522..515143TCONS_00010367-exon-sc0000104-1575043694:514522..515143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:514522..515143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0859025	0.0837685	0.194526	0.856412	11.1211	5.95021	1.54618	1.44751	1.52016	1.88296	0	0.400474	0.51418	0.593312	0	0	10.0599	7.20455	0.182633	1.43334	27.2422	29.2898	4.82621	3.85046	8.20845	9.6306	1.0601	0.502832	0.19069	0.388566
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top