TCONS_00010368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010368
Unique NameTCONS_00010368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010368 ID=TCONS_00010368|Name=TCONS_00010368|organism=Clytia hemisphaerica|type=transcript|length=682bp
GAaaaacttttatgaaatttattttggtttGGAAGTAGTAGTACTATGAA
GGCTTTAATTCAGGACTAATACTATTTTCATTAagtttaccatttttcaa
aaatagaccgAAAAAAGCTCTGAtttccttccgtgacagaaacgggactt
ttcaatttggccctGGTGTAGGCATCACCAGATGCTATAAAACCTTGGGG
CATAGGAAGATATCTGTATCGTCCCCATTCAGTTATAAAAGTCGTGAGAT
GTTGGCTCTCTTCATCAATTGGTACCGAATGATATCCGTCAACTGCATCC
AAGACAGTCTTCTTGGTATTGGGAGGTACTTGACACGCGAGTTGGAACGG
GGAGGGACAATGGTGAGTTTCGCGTTTACACTGTATGTTGAGTTGTTGGA
GGTCAACTGTCCGTCTAATATTGCCGTTTTTCTTTCTGGCTGTGACCATG
GTGGTGCACCACTCGACTGGTGTTCCGATCGGTACAGGTGCTATAATGCC
TCTCTTGACGTCGTCGTCCAGACTCTTCTTGACTGCTTCCTTAAGGTGGA
AAGGCACTGGGATGTGGTTATGACGAACATGCGGCTTCGCATTAGGTTGA
ATATGGATGTGGGCAGGTTTCGTATCCATGGATGGAAATGGTCCGTCTCT
GTTGAACGtagttttggaaaattgttctaaTA
Run BLAST on NCBI

protein sequence of TCONS_00010368-protein

>TCONS_00010368-protein ID=TCONS_00010368-protein|Name=TCONS_00010368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
LEQFSKTTFNRDGPFPSMDTKPAHIHIQPNAKPHVRHNHIPVPFHLKEAV
KKSLDDDVKRGIIAPVPIGTPVEWCTTMVTARKKNGNIRRTVDLQQLNIQ
CKRETHHCPSPFQLACQVPPNTKKTVLDAVDGYHSVPIDEESQHLTTFIT
EWGRYRYLPMPQGFIASGDAYTRAKLKSPVSVTEGNQSFFRSIFEKW
Run BLAST on NCBI

transcript from alignment at sc0000104:544772..545453

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010368 ID=TCONS_00010368|Name=TCONS_00010368|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at sc0000104:544772..545453 (Clytia hemisphaerica)
TAttagaacaattttccaaaactaCGTTCAACAGAGACGGACCATTTCCA
TCCATGGATACGAAACCTGCCCACATCCATATTCAACCTAATGCGAAGCC
GCATGTTCGTCATAACCACATCCCAGTGCCTTTCCACCTTAAGGAAGCAG
TCAAGAAGAGTCTGGACGACGACGTCAAGAGAGGCATTATAGCACCTGTA
CCGATCGGAACACCAGTCGAGTGGTGCACCACCATGGTCACAGCCAGAAA
GAAAAACGGCAATATTAGACGGACAGTTGACCTCCAACAACTCAACATAC
AGTGTAAACGCGAAACTCACCATTGTCCCTCCCCGTTCCAACTCGCGTGT
CAAGTACCTCCCAATACCAAGAAGACTGTCTTGGATGCAGTTGACGGATA
TCATTCGGTACCAATTGATGAAGAGAGCCAACATCTCACGACTTTTATAA
CTGAATGGGGACGATACAGATATCTTCCTATGCCCCAAGGTTTTATAGCA
TCTGGTGATGCCTACACCagggccaaattgaaaagtcccgtttctgtcac
ggaaggaaaTCAGAGCTTTTTTcggtctatttttgaaaaatggtaaactT
AATGAAAATAGTATTAGTCCTGAATTAAAGCCTTCATAGTACTACTACTT
CCaaaccaaaataaatttcataaaagttttTC

Coding sequence (CDS) from alignment at sc0000104:544772..545453

>TCONS_00010368 ID=TCONS_00010368|Name=TCONS_00010368|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000104:544772..545453 (Clytia hemisphaerica)
ttagaacaattttccaaaactaCGTTCAACAGAGACGGACCATTTCCATC
CATGGATACGAAACCTGCCCACATCCATATTCAACCTAATGCGAAGCCGC
ATGTTCGTCATAACCACATCCCAGTGCCTTTCCACCTTAAGGAAGCAGTC
AAGAAGAGTCTGGACGACGACGTCAAGAGAGGCATTATAGCACCTGTACC
GATCGGAACACCAGTCGAGTGGTGCACCACCATGGTCACAGCCAGAAAGA
AAAACGGCAATATTAGACGGACAGTTGACCTCCAACAACTCAACATACAG
TGTAAACGCGAAACTCACCATTGTCCCTCCCCGTTCCAACTCGCGTGTCA
AGTACCTCCCAATACCAAGAAGACTGTCTTGGATGCAGTTGACGGATATC
ATTCGGTACCAATTGATGAAGAGAGCCAACATCTCACGACTTTTATAACT
GAATGGGGACGATACAGATATCTTCCTATGCCCCAAGGTTTTATAGCATC
TGGTGATGCCTACACCagggccaaattgaaaagtcccgtttctgtcacgg
aaggaaaTCAGAGCTTTTTTcggtctatttttgaaaaatggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005827XLOC_005827Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010368-proteinTCONS_00010368-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010368-exon-sc0000104-1491911889:544772..545453TCONS_00010368-exon-sc0000104-1491911889:544772..545453Clytia hemisphaericaexon
TCONS_00010368-exon-sc0000104-1510915933:544772..545453TCONS_00010368-exon-sc0000104-1510915933:544772..545453Clytia hemisphaericaexon
TCONS_00010368-exon-sc0000104-1575043694:544772..545453TCONS_00010368-exon-sc0000104-1575043694:544772..545453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:544772..545453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5347	1.87644	3.40472	3.54697	5.8041	6.92568	4.91802	6.96882	2.63256	3.94919	2.35971	2.11224	0.802568	1.16472	0.681452	1.32549	1.20325	0.780267	1.43975	0.917781	1.11845	1.42847	0.688001	0.170208	1.9993	2.21491	1.23417	0.658572	0.499504	0.459968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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