TCONS_00010372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010372
Unique NameTCONS_00010372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1079

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010372 ID=TCONS_00010372|Name=TCONS_00010372|organism=Clytia hemisphaerica|type=transcript|length=1079bp
CTGCGTTGGTTGGTGGTGCGAGTCTGACGATAGTCTCTACTTTCGATGGA
TCTGCAGACATACCTTCGCTGGAAAACTTATATCCAAACCAAATAACTTC
TGGAGCACTCCATACACATTTCTCTCGTCTAAGTGTTAAGCCGAGGGATT
GTAATCGATCAAGTAGAGCACTCAAATGGAGGTCATGCTCATGCTGGCTC
TCTCCGTAAACTAGCAAATCGTCTTCAATCTGTTCCACACCACCGAGGTC
TACAATACTTTGCCGCAAACGCTCGTGGAACTCTTGACTGGCAGGTCCAG
CACCCATGACAAGACGCTTAAATCGGTAGATGCCTTCGTGCGTGTAAAAG
TTTGTAAGTTCTTTCGATTTCTCGCCGAGTGGCGTTTGGTGAAATAAATG
TTTCATGTCCAGCTTTGTGAATACTTTGGCGCCGTTAAGCTTGTGACGCA
AGGAATGGACAGTCGGTACGGGAATCTTTGATGGCAATATTTGCGTGACG
CATGTCTAAATTCATGCGTATCTGCCCGGATGGTTTCTTTGTAATGACAA
CGTTCGAGATCCAGTCGAGGTTAACACTTGGGTCTAACGGGTCTTTGATG
ATGTCATTGTCTCAAAGTTCTTTGAGATGGCTCGTGACTTGTTTTCTGAA
AGCGAACGGTATCGGCTACTCCTTCTGTATCATTGGTTTGATCGATCCGT
CTATATCAAagtttatttctgatttattgaaCTTGCCGATTCCCTCAAAG
ATAGGTTGATGCTTGTCGATGATTTCAGTCACTGAAGTTGGGACTTTCTC
TGGTTCGTTGATGTGGTATACTGGCGTTTCCGGATCATTGGCGTCTCTGC
GGCCTTCTGGGTGAATCTCCAATACACCGAGCCTCAACGATGCTTCTAAA
CCTAAGAGCGGTTCCGTGTGGTTTCCTTCTATCACGTAAACGAGTTGCTC
GGCTGTTGCTCTACTGCTAGTGGTCGGTTCGATCTTTGCCCTACCCTTCA
CTCGCAGCAGGTCTTTAGTACCATACGGGCGGAGCTTCACTTTCGATTTA
TACAGTCTGGTCGTGTTGGCAAACTTGNN
Run BLAST on NCBI

protein sequence of TCONS_00010372-protein

>TCONS_00010372-protein ID=TCONS_00010372-protein|Name=TCONS_00010372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
XKFANTTRLYKSKVKLRPYGTKDLLRVKGRAKIEPTTSSRATAEQLVYVI
EGNHTEPLLGLEASLRLGVLEIHPEGRRDANDPETPVYHINEPEKVPTSV
TEIIDKHQPIFEGIGKFNKSEINFDIDGSIKPMIQKE
Run BLAST on NCBI

transcript from alignment at sc0000104:609010..610088

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010372 ID=TCONS_00010372|Name=TCONS_00010372|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at sc0000104:609010..610088 (Clytia hemisphaerica)
NNCAAGTTTGCCAACACGACCAGACTGTATAAATCGAAAGTGAAGCTCCG
CCCGTATGGTACTAAAGACCTGCTGCGAGTGAAGGGTAGGGCAAAGATCG
AACCGACCACTAGCAGTAGAGCAACAGCCGAGCAACTCGTTTACGTGATA
GAAGGAAACCACACGGAACCGCTCTTAGGTTTAGAAGCATCGTTGAGGCT
CGGTGTATTGGAGATTCACCCAGAAGGCCGCAGAGACGCCAATGATCCGG
AAACGCCAGTATACCACATCAACGAACCAGAGAAAGTCCCAACTTCAGTG
ACTGAAATCATCGACAAGCATCAACCTATCTTTGAGGGAATCGGCAAGtt
caataaatcagaaataaactTTGATATAGACGGATCGATCAAACCAATGA
TACAGAAGGAGTAGCCGATACCGTTCGCTTTCAGAAAACAAGTCACGAGC
CATCTCAAAGAACTTTGAGACAATGACATCATCAAAGACCCGTTAGACCC
AAGTGTTAACCTCGACTGGATCTCGAACGTTGTCATTACAAAGAAACCAT
CCGGGCAGATACGCATGAATTTAGACATGCGTCACGCAAATATTGCCATC
AAAGATTCCCGTACCGACTGTCCATTCCTTGCGTCACAAGCTTAACGGCG
CCAAAGTATTCACAAAGCTGGACATGAAACATTTATTTCACCAAACGCCA
CTCGGCGAGAAATCGAAAGAACTTACAAACTTTTACACGCACGAAGGCAT
CTACCGATTTAAGCGTCTTGTCATGGGTGCTGGACCTGCCAGTCAAGAGT
TCCACGAGCGTTTGCGGCAAAGTATTGTAGACCTCGGTGGTGTGGAACAG
ATTGAAGACGATTTGCTAGTTTACGGAGAGAGCCAGCATGAGCATGACCT
CCATTTGAGTGCTCTACTTGATCGATTACAATCCCTCGGCTTAACACTTA
GACGAGAGAAATGTGTATGGAGTGCTCCAGAAGTTATTTGGTTTGGATAT
AAGTTTTCCAGCGAAGGTATGTCTGCAGATCCATCGAAAGTAGAGACTAT
CGTCAGACTCGCACCACCAACCAACGCAG

Coding sequence (CDS) from alignment at sc0000104:609010..610088

>TCONS_00010372 ID=TCONS_00010372|Name=TCONS_00010372|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000104:609010..610088 (Clytia hemisphaerica)
NNCAAGTTTGCCAACACGACCAGACTGTATAAATCGAAAGTGAAGCTCCG
CCCGTATGGTACTAAAGACCTGCTGCGAGTGAAGGGTAGGGCAAAGATCG
AACCGACCACTAGCAGTAGAGCAACAGCCGAGCAACTCGTTTACGTGATA
GAAGGAAACCACACGGAACCGCTCTTAGGTTTAGAAGCATCGTTGAGGCT
CGGTGTATTGGAGATTCACCCAGAAGGCCGCAGAGACGCCAATGATCCGG
AAACGCCAGTATACCACATCAACGAACCAGAGAAAGTCCCAACTTCAGTG
ACTGAAATCATCGACAAGCATCAACCTATCTTTGAGGGAATCGGCAAGtt
caataaatcagaaataaactTTGATATAGACGGATCGATCAAACCAATGA
TACAGAAGGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005831XLOC_005831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010372-exon-sc0000104-1491911889:609010..610088TCONS_00010372-exon-sc0000104-1491911889:609010..610088Clytia hemisphaericaexon
TCONS_00010372-exon-sc0000104-1510915933:609010..610088TCONS_00010372-exon-sc0000104-1510915933:609010..610088Clytia hemisphaericaexon
TCONS_00010372-exon-sc0000104-1575043694:609010..610088TCONS_00010372-exon-sc0000104-1575043694:609010..610088Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010372-proteinTCONS_00010372-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:609010..610088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31598	0.756143	1.8144	1.07046	0.559114	0.697997	0.874885	0.938231	0.498584	1.22377	0.777422	0.959921	0.610295	0.790508	0.701142	1.08698	0.763217	0.717922	0.928028	1.27533	1.91857	2.18391	0.486391	0.845872	0.478063	0.435855	1.04278	0.991504	0.277976	0.422195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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