TCONS_00010392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010392
Unique NameTCONS_00010392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010392 ID=TCONS_00010392|Name=TCONS_00010392|organism=Clytia hemisphaerica|type=transcript|length=2135bp
TTCGCGATTCTAAATTGACCAGCATGACTAGCTTGCGACGGCATGATAGG
GTTGTGTGAGTAAGTCTGAAAACTGGCTAGTGCCTCAATGCTGGTGCAAA
AAACAATTAATAAACTGCATTTTGGGTTTGTTTTGGTAAAAGATTTTTCG
GAGAATTTTCGCTTAGTTCAGAGTTTCTTTTTCAGGTGCTTAGCTTAAGG
CatcaaaagaaatacttattattCAGGTTACAAATCAACACAGAGAGCTT
TGTCATACAAATCTTTGGACATGGCCACATCACCAACAGTTTCATCTCCA
AATGGAAAGAAGCTCGTTAAGACAAAGAGTGGATTAAGAATGATCAACAT
CATAGAGGATGAAAGATCTCCTTTTGAAATTGAAGAACCCATTTGGAAGC
CTGATTCAGATCAAATGATATGTGACAAATGTGGTGTACGCTTCAGCTTC
ACGACCAGAAAGCATCATTGCAGAAGATGTGGCAAGATTTTTTGTGGCTC
GTGTTGTACAGCCAAAGTGTCCTTACCGCGATTAAGCTTCGTGGATCCTC
AACGTGTTTGCACGGACTGTATCAATGTGtccaaaagtgaaagtgaattA
TTCAACAATGTGCTCCCaattctatgtaaagGCGCAGAGTTTCATTTGAA
TGACCAAACTGATGTCGTCAGTTGTAAATTGGAGGCAAAACTTAACAGga
atttgattttcaccacAAGCAACAAAGTGGAGATGCAAGAAACAGTTTAT
TTGAAAGATATCACAACATTTCAATGTCTCACTGATCCCTTACAAACCGA
CAAAAACGGCAAAGGAAAATTGGTGGGTGTGAACATTAAGTACATCGCAG
ATAACACCACACGTGAACTCAAGATGCAAGTTAGCAATGAAATTAGAAAT
CAAAAAGAGAGTCTAACCTTCCTCATCATGCTACAAAAGGCCATGAAGAT
GATTTTCGATGCGAGTTGATtctcatttttggaacttttgtaCTACAGTA
GCGCAaataaaggttttattttttatgtatttagTAATTTATAGCATTTA
CATTGTTGATAATATTTTAAAGCCAATTcttaattggtgtttctttaaAG
CTTAGACATTGGTCCTTGGAAGCCCTAGCTCAGCATTTATGATAGAGGCT
CAGCTATAGAACCCATCTCGAATTTAAATGAAGGAACTTGAACAAGTTTT
GTTGGGTACATCCGAAACCTAGATTTCGAAGTATTTCTTCACATACTTTT
CCCCGTTTTTCTATTTGATAATCTCCCGACCCTTAACTTGGGAATTTTGA
GCCAATGGTTGAAAACGAGTACAGTCTGAGCTTCTAGTGATTTATTTCAA
CAAACTTAACTTTTTTAGGGTTTCTGGGAGCTTTTTAGGTTAAGCAGATA
AGTTCATTCATGAAAGTCGTTTCGGATGTTTGATATTATCTTTTGTttag
agatttcttttttattataaaaaaatgtgttatCTTATGTGTAGGATATT
GAATACCAGGTAAGGCGATATATATTTTCTCCTACGCTTCCCTCTGGACC
TTGGTTTTGTTTCCATCAACTCGAATTTTATCcatcaatatttcaaaact
ctcaTGATAAGTTATCATAATATGAGTAGAGCGTGGGTTCTCTTGGTCAA
AAGCAAACGAGCtgtcttttatttgttttcttttctaaacACCCGCTGAA
CTGATATCCAATAAATTTGCcagattttagatttatatTGTCTGAAAAGT
ATAGTTTGAAATACTTCTCGTGGTTTGCAAACTGGCAAATGGCAAAagca
tcttttgaaaaaaacaagatAATATATTTTGATGATGGTGGTTTTTTTCT
TCCAACTGAAATTTCCCAAGGATTTTGACCAAGGCTAGCTGTtcataatt
tgttcttaggttttgacaAAGTCTCAGCtccattttcatatttttataaa
aataagcgTGTATTACCTTCCGACTTTTTTAATAGTTCTTATAACATTTT
ATATAGGTATAGTGAAGCCTTGTTGTTAttggacttttttacaattaatt
ttttattgattctaattatttcttatattcatttGAATTTTCTCTAATTT
AATTTATGATAAGATAATTTTTGAGGGAAAACAGC
Run BLAST on NCBI

transcript from alignment at sc0000106:70034..85115+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010392 ID=TCONS_00010392|Name=TCONS_00010392|organism=Clytia hemisphaerica|type=transcript|length=15082bp|location=Sequence derived from alignment at sc0000106:70034..85115+ (Clytia hemisphaerica)
TTCGCGATTCTAAATTGACCAGCATGACTAGCTTGCGACGGCATGATAGG
GTTGTGTGAGTAAGTCTGAAAACTGGCTAGTGCCTCAATGCTGGTGCAAA
AAACAATTAATAAACTGCATTTTGGGTTTGTTTTGGTAAAAGATTTTTCG
GAGAATTTTCGCTTAGTTCAGAGTTTCTTTTTCAGGTGCTTAGCTTAAGG
CatcaaaagaaatacttattattCAGGTTACAAATCAACACAGAGAGCTT
TGTCATACAAATCTTTGGACATGGCCACATCACCAACAGTTTCATCTCCA
AATGGAAAGAAGCTCGTTAAGACAAAGAGTGGATTAAGAATGATCAACAT
CATAGAGGATGAAAGATCTCCTTTTGAAATTGAAGAACCCATTTGGAAGC
CTGATTCAGATGTAAATATCTCAAAACCTTTGTTTTGTGGGTCccctttt
ttttgttttttttttgctgaattcAAAGTTGGTATCAGACTTGAAATCTT
GCACAATATAagtaaaaaagggaaaatcGTTTACACCCTGGTTCTTATAC
CTAAAAGCATACAAAAGCATTCTCCAAGCCATTATCACATGAACCATGGA
ACCAATGCTCCATTTTTCTGGTTTAGTCATGATAAATTTTGTCTGTACAT
AACATTTATTGTGTACTAGACTAGGCTATGTTACAAAGACGCTAGGCATG
cctaaaacaatgaaatgattaatgcccgggggggggggNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttttactaaaattt
ggtctctctaagggtcggttttcggaggtcccgtccgcacatacccctca
ttcaccaaccctagtaccccccccccgggattaaTGGTAAGGGCAGATAA
CAATTCATTTTCAATATTCTAGGATACTCAAGCTTTAGTTTAGATACTTA
AATAATTGTTCACTTATTTTTTCATTCGATTTTTATTTAATATAGTTTGT
TTTATCTATAAAACCCTTTTTCAGACACTCAGGATTTtccatgttggtat
cgataccaatttagggggatAGGCCCTGCCCCTTTTTTTTAGATAATTAG
GATTTTCAagttcaagttggtattgatactaAATTAGGGGGGTGGTGCCT
TCTACTTTCAAATCTaaaaaagtcaggtttttgggccatgggttggtatc
ctggaccctgacccccTGGCTGATACTTTAACAATGCTATTTTTGTAGCA
ATATGCCTTCCACCGTTTCGCATAGCCCTCATACTTTTTCCTTGTAGAAT
CTCTAATTATTCTATGGATGGTAAATTTATAGTTTAAGGACTTTTCCttt
aaatttgcaaaatttgttTATGAACATTGTTGAGGAACTTTTTAAAGGTT
ATGTTGGTGAATTGAATATTATAGTGATGTTATATGTCTTTTGCTATACT
AAGAACGGCTTGTAACTTCAGACGTAAACAGGGTTTCTTTGAGCTTTCAC
TTAAACTGTAGCACTTTATCAAATATTAACGGGTGTGCCAGACTTAATTT
ACCCTCTTTGAAGTATAATTTGGCCAAGAATTTTTCGAGTTTCAACTCTT
TTTACATAGAATGCACCCACCCccccctgagcttagggggggggctaaac
catttttgcttaattgggggctgtatttttttaaaaatactgggggctag
cttgctagggggctgagtgttgtgtaatagaactgggggcagagctgata
ggttgaagatattttaaatactttaatcgtagaaattttagcgagactaa
ttttagcgttttagcaagttttccctattttcgctaaaataaatcttgcC
AAAGCACGCCGAATCGCCAGATCGCTAGAATTTATCCAcccgaaatttct
ggttatattgccttgatacattttttataaataggaagggtttcagtgca
aagaaatgctagaaaaccaattcaatcaataatgtaatacgagtattcgc
taaaatttatccacgcaaaattttttgaaatcgtgattatcgctaaaata
aatccaaaaaaaataaaaattttcctggcatgctaatatacgctaaaatt
agtctctaaaatttctacgattaaagtaatgttaaaaatctatgctgtgg
ggaagcttttatccctcttgaaaaattttttttgcgcgcaataaatttat
tgagaatttgcatgcaaaatttctttgacattttgctttgtgaaggtggg
ggctatatttctagaatttagccgggggctattttccatagccccccccc
tgaaaaatgctggggctggacccctctgcacactatgtttTATAGAATCA
AAGCTTTTTCATTAGAAATATAGTGATAAACTTAGATTTTGATAGGTCGT
Ttgtcattttttgttcactggatcaaaacttttcttaaaatgaaaaaaaa
tcattttcagacgTTATCATGTTATAATTTTTATTGCATAATGCCATTAT
ATACTTCTAATTATTGGAGTAAAAATCGTATCATCTTTAAAAGATGatct
attgtcattttataatatagTGTTAACTCAGCTCAGAACAGTGGCTTTTT
TTCTAAGCATGTACTTTATGATAAAATTGggcaaaatatcaagaatattC
TGAGAAAActaccatcatggaatttggcaacagAACCTAAGAATGCAATT
TCAGAGCATTTTTATGCAGAAAGACCTCTATATTTGTTTCagtttaaagt
cttttttattgataaaaatcgTTGAGAAATCACTTGTCCGGACAATTTGA
GGAATGTATATTTAGTCCTGTAGCCCTTCTTCAAACCAAAGAGGATTAGA
GAAAAAATATTCTCTAACAGCACATTCAGTTGATTGGAAATAATGCGCTC
AAAAGTCTTCGGAGGGGGTTGGCAAAAGGCTCCACATGACTGTAGTTTCA
GGTTTCATGGTCGATCAGCTGTGAGACAAGGAAGTATTACCAGTATGATA
TTTTTCAGAGTATGACATGTAACATTTAGAGAAATAAAAGAATTTAGAGA
AAATGATTCCCATTTTAGCGTGGAAAAACTAGACAAATAGGTTCCAATTT
TTGGTTTGAGATTTAGATCAATTTTAGATCCAAACTACCAGCTTATACGA
TTATGTGCTGATTATTTGACGATATAAATTTTTACAATTATTCTTCAATC
TCTATTTCTTCCATTTCAGCAAATGATATGTGACAAATGTGGTGTACGCT
TCAGCTTCACGACCAGAAAGGTAAGCGATTTATTTTGTGATATTAAATAA
TCGCTTTTAAGTTAGGTCAAGTTGAAGTCATTCTCGGGTGCTTTGTACGT
GCGGAGATGGGCTTAATCTTTCATTAAAGGGAATCGCTGGATCAGGCTTC
TTAGAGCAGAATAAGGGAAATTTTACTTTTGACAgcttgaaatattttac
aagAGATGACTAAAATATTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGAGGACGGTTGT
GAAGAGATTGATGTCGTCAGCAAATTTGAAAAGGAGATTTATCACGACGG
TAAACGGTATGTAAGTAAGCTTCCTTTCAAGCCAAACCACGACGAGTTAC
CAGACAATTTCAGTGTCTCCAAACGGAGACTTGAGAATGTGAGAAAGAGA
CTAAAGGCGAGTGGGATTTTGAACGATTATGACCAGATTATCAAGGATTA
TGAGAAGGATTCCATCATAGAAAAGGTTCCAGAGGAGGAGATTGCAAAGG
ACAGAGGCAAGGTTCATTATCTTCCACATAGGGCAGTCGTGAAAGAGAAT
AGAGAGACAACCAAGATTAGAATTGTGTTTGATGCGTCGTGTGGGGTTAA
CGGGCCCTCCCTGAATGAGTGTTTGTATCCTGGTCCCAACATGCTTGCAA
AGATCTTCGATATTCTGTTGAGATTCAGGTTAAATAGAATTGCGATTACA
GCGGATATCAAACAGGCTTTTCTGAATGTTGGTATTCATCCTGAGCATAG
AGATTTTCTGCGGTTCTTGTAGCATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTTCTGCGGTTCTTGTGGTATTCTTCGGATAATGAA
GTTGAGATTTTTCGGTTTCGAAGAGTTGTTTTTGGGCTTACTAGTTCGCC
ATTTTTGTTGAATGCAACGATCAAGCAGCATGTGGAGAAAGAAAAAGACG
TtttctttgtgaaaaaatttctgaacGCTTTGTACGTGGATGATGAGGCT
AGTGGTTGTGAAAACGTGGCAGAAGGTAAAGAGTTTTATCAAAAGGCGGC
AAAGGTTTTGGCTACGGCGGGATTGGATCTGAGGAAGTGGAAGTCGAATG
ACAGGGAGCTGCAGAAGTTTTTTGATGAACAGGTGATTGAACCGAAGGGT
GACGGAGTCGACGAATCATTTTGCAAATCTCAGCTTGGTCAAAAGACCGT
TTCTTCCAACAAAGTTTTGGGGATGGACTGGGATAAGGAAACAGACTCGT
TAGTAGTGTGCTTAAGTGAGTTCGTTGTGAAATGTCGAAGAACTGTATTG
ACGAAAAGGAATATTTTGAGTGTTTCAGCTTCTCTTTACGATCCCTTAGG
GTTGATTTCACCCATCACGGCGTGGATGAAAACCATTTTCCAACTACTCT
GCAAAGACAATTTGGAATGGGATTGCGAGGTTTCGGAGGAAATAAGGGAG
GCTTGGTTTCGATTTGTCGATGTTGTTGCAAGTGTGGGTAAAGTAACGGT
GGTGAGGTTTGTCNCTTTCTTAAGCTCTTCTGACTTTCAAGCGAATCTTT
CTACTTCCGATTCTTTTGATGACATCATTACGAATCTGTCTTCTTGTGAA
CTTTACAATGACATAATGAAAGAGAGTATCGACTTAACGGAAACTAACAA
TATCGTGACAACGACTTTGACAATGACGAAAATACCTGCTACCAACTTAC
ACGCCATCATTGAGTACGAACGTTTCGGCTCACTCGAGAAGCTTATAAGT
ATACTAAGCTACGTCAGACGATTTATTGAGAATttgaggaagaagaagaa
aggaaAACCATTATCATTGGACACTCTTTCAACTGAAGAACGAAAAGACA
CCATGGAACTGATTACTGCAGACGAACAACATCAACTGAAGGGACAAGAG
AACtaccaaaaattgaaatcatcGTTAAACTTGTTTGAAGATCAGAAAGG
ACTTTTACGACTACGCGGACGATTCGGAAATTCAACATTACAATACCAAG
AAAAGCATCCACTCATACTCAGAACAGACAGTGTATTTACGGAACTACTT
ATAAAGGAGACACACGAGAAAGTATTCCATCACGGCGTAGATGGCCCATT
TACGAACTAATTATTGGATTGTCAGAGGAAGGAAGACAGTCAAAAATTTA
CTATATAAGTGTACCTTATGCAAACGTTATCAAGGAAAGACAATATCACC
ACCAGCTAGTCCTGACTTGCCAGATTTTCGTTTAAGTTTTAATGCTTTCA
ATGCCACAGGATTGGACTACGCTGGACCCTTGTATGTACAAAGTGAAGAT
AAGAAAGAGACTCAGAAGGTCTATATTCTACTCCTAACATGTGCTGGAAC
TCGTGCTATCCATCTAGAGGTCTGTCCAGACATGAAAAATTCTGCTTTCC
TTCGtgcttttaaaagattttcgtcACGCCGAGGTGTACCTTGTGTGGTT
ATTCACGacaatttcaaaactttcaaatcgAGAGAagttaaacttttttt
cagcCAACAGGACATTGAACAACAATTTATTTTACCTTCTTCCCCCTGGT
GGGGTGGCATGTACGAGCGTCTTGTGCGCAGCgtgaaaatatctttaaag
aaaacattaggTAAATCCCTAGTAACACTANTGTACGAGCGTCTTGTGCG
CAGCgtgaaaatatctttaaagaaaacattaggTAAATCCTTAGTAACAC
TAGAAGAATTGCAGACGATCTTATGTCAGATTGAGGCGTTTATTAACAGC
AGACCACTATGTTACGTAAACGAAGATGACATCGACGAGACTATCACACC
AAACCATTTAATTTTTGGGAAGAATATCTTTCACAAGCAACACGGTAATA
CtgaagttttgtttttagacAATAATGACGACTGTACAAAGAGAATGAGA
CACATAAAAATCATTCTGTCACATTTCCAAAATAGATATGAGNCtgaagt
tttgtttttagacAATAATGACGACTGTACAAAGAGAATGAGACACATAA
AAATCATTCTGTCACATTTCCAAAATAGATTTGAGAAAGTTTACCTTCGA
GAATTGAGGCAAAATAACATTTATAGAAAGAATACGGATAATGATGTAAA
GTTGCGCGTTGGAGAGGTTATTTTAATTAAAGGAGAAAAGATGGTACCAA
GAGCAGAGTGGAGAACCGGAATAGTTGAGGAATTGGTGAAAGGTCGGGAT
GGCAAAATCAGAGGAGCAAAGATTAAAACGACATCAAAACAAGGACATTC
AACATCCGTTCACCGACCTGTGCAAAAACTGATAAAATTGGAGAAAGAGG
GAAATGAAGCAGAACCGACATTGAAGGAGAAACCGAAAGTAGATAAGCAC
GTTGAAAGCACAAGGAGTAGACCGACCAGAAGAGCGGCAATTGAAGGAGT
TTTACGTAGActcataaatacaaaataaaattttcattttttctcgcGGG
GGAGTGTGGAAAATAGTGAGAGGTCTAGGGCTAGAGAAACGACGCGTGCG
CAATTACGTgacttatacacgttttttagaTTGCGTTCTGTACATAGTTT
TTATATTCATTCTAAAAGTATATTCAGTAGCGGAAAGACGTATAAAGTTA
TATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATACTCATGATCCAG
AACTATTAAGACTTAAGAAGATTTTACACAGGGTTTCTTTGAGCTTTCAC
TTAAACTGTAGCACTTTATCAAATATTAACGGGTGTGCCAGActtaagtt
accctctttgaagTATAATTTGGCcaataattttttgagtttcaacTCTT
TTTACATAGAATGCACCCACCccccctgagcttagggggaggggctaaac
catttttgcttaattgggggctgtattttttaaaaaatactgggggctag
cttgctagggggctgagtgttgtgtaatagaactgggggcagagctgata
ggttgaagatattttaaatactttaatcgtagaaattttagcgagactaa
tctTAGCGTTTTAgcaagttttccctattttcgctaaaataaatcttgcC
AAAGCACGCCGAATCGCCAGATCGCTAGAATTTATCCACctgaaatttct
ggttatattgccttgatacattttttataaataggaagggtttcagtgca
aagaaatgctagaaaaccaattcaatcaataatgtaatacgagtattcgc
taaaatttatccacgcaaaattttttgaaatcgtgattatcgctaaaata
aatccaaaaaaaataaaaattttcctggcatgctaatatacgctaaaatt
agtctctaaaatttctacgattaaagtaatgttaaaaatctatgctgtgg
ggaagcttttatccctcttgaaaaattttttttgcgcgcaataaatttat
tgagaatttgcatgcaaaatttctttgacattttgctttgtgaaggtggg
ggctatatttctagaatttagccgggggctattttccatagccccccccc
tgaaaaatgctggggctggacccctctgcacactatgtttTATAGAATCA
AAGCTTTTTCATTAGAAATATAGTGATAAACTTAGATTTTGATAGGTCGT
Ttgtcattttttgttcactggatcaaaacttttcttaaaatgaaaaaaaa
tcattttcagacgTTATCATGTTATAATTTTTATTGCATAATGCCATTAT
ATACTTCTAATTATTGGAGTAAAAATCGTATCATCTTTAAAAGATGatct
attgtcattttataatatagTGTTAACTCAGCTCAGAACAGTGGCTTTTT
TTCTAAGCATGTACTTTATGATAAAATTGggcaaaatatcaagaatattC
TGAGAAAActaccatcatggaatttggcaacagAACCTAAGAATGCAATT
TCAGAGCATTTTTATGCAGAAAGACCTCTATATTTGTTTCAGTTTAAAGT
ctattttattgataaaaatcgTTGAGAAATCACTTGTCCGGACAATTCGA
GGAATGTATATCGCTGTAGCCCTTCTTCAAACCAAAGAGGattagagaaa
aaatattttctaacaGCACATTCAGTTGATCGGAAATAATGCGCTCAAAA
GTCTTCGGAGGGGGTTGGCAAAAGGCTCCACATGACTGTAGTTTCAGGTT
TCATGGTCGATCAGCTGTGAGACAAGGAAGTATTACCAGTATGATATTTT
TCAGAGTATGACATGTAACATTTAGAGAAATAAAAGAATTTAGAGAAAAT
GATTCCCATTTTAGCGTGGAAAAACTAGACAAATAGGTTCCAATTTTTGG
TTTGAGATTTAGATCAACTTTAGATCCAAACTACCAGCTTATACGATTAT
GTGCTGATTATTTGACGATATAAATTTTTACAATTATTCTTCAATCTCTA
TTTCTTCCATTTCAGCAAATGATATGTGACAAATGTGGTGTACGCTTCAG
CTTCACGACCAGAAAGGTAAGCGATTTATTTTGTGATATTAAATAATCGC
TTTTAAGTTAGGTCAAGTTGAAGTCATTCTCGGGTGCTTTGTACGTGCGG
AGATGGGCTTAATCTTTCATTAAAGGGAATCGCTGGATCAGGCTTCTTAG
AGCAGAATAAGGGAAATTTTACTTTTGACAgcttgaaatattttacaagA
GATGACTAAAATATTCCCTTAAAGGTCCATGCGCAAGCAAATCCGGTCCT
GCAGTCGATGACCCATCTATGAGATACTTATTTTATTTTAGCATCATTGC
AGAAGATGTGGCAAGATTTTTTGTGGCTCGTGTTGTACAGCCAAAGTGTC
CTTACCGCGATTAAGCTTCGTGGATCCTCAACGTGTTTGCACGGACTGTA
TCAATGTGtccaaaagtgaaagtgaattATTCAACAATGTGCTCCCaatt
ctatgtaaaggttggtaaATTGTTTACTTTATATTCAAGTTGCTCCAGAT
TTGCTGTTTTGTATTTGATGAGTAATATTGTCTGAATCTTTCAAAGTTAT
AAGCCTTGACTTCCGTGTAAGAGATTGGGGTTCTCACTCGGGGCCTCATT
GTTGTTTTCTTCATCAAAAGAATTATGCGCTCACTCCATATCTTTCATGA
AGAATGTTAAATTGCCTTTTTATTTTAGGCGCAGAGTTTCATTTGAATGA
CCAAACTGATGTCGTCAGTTGTAAATTGGAGGCAAAACTTAACAGGTTTC
CATTCAAAAGTCTTTCTCTTTAAAAGAAACtgtttaacccccccccccac
accatttgcttacacgacatttttgaacaaaagaTAACAACTTTCTACCT
CTCCAGTGCTGCGCAAGCACAAACTTCATTTGTTATGTATTTCTGCTTTG
ACAGCATAAGAAACGCGCCTCTTtcctaaaatataaaaaaaagaataaga
aacCTATTTTTGTAAGTTACGTCATTGAGTTATGGTAATTtgcagaagca
gccggcggagagatcagaaatatatgttcttatattccaggagaccacat
gttatgaccttcaattttttatacaaatgatgtgttctgacttCTTTAAA
ATCTTTATCGGACTATTTGTTTCCTTGAACCAGAGAAATGAAATGGAATA
GGAAAACAGCTTCTCTGATTAGCCAAAGTGTTTTGATTGTTTCTATAGAA
AACGCTTTTGTTTTAGCTTTGATTAGGTCGTTAGAAAAAGTTCAAGAGAa
gacaagaaaagaaaatttgccGCTTTTCTATATGCTAtgatcataaaaaa
agaggaattacttttttcgtttttaacagATTGCTTTCAAAACTTTCAGT
GTGAAGTAACAAATTTCACACCATTTTGTTGCctgaaaaattctcatcac
CTGGTACATGACGAGccgtatttccattgttttcaagaagctgtttttcc
atctctttacactTCTCTGCCTGAAACATGAAGATTTACGTGTTATCCTT
ATGCctaaacttacttacttacttctAAAACAAGAACTCGTTAGAAACAT
ACTCGAAGAACACATTGGAAAAAAAGATCACCTCGCCGACTGCTTTTAAA
TTTGGTACCACTAAGACAACTGATACTGTTCATTTTAGCAAATTAATAAA
GAAACGTCTTGTGATTTAATGAATTTAGTAGGAATCTTTTGGGATTCTTT
TGAAcaggaatttgattttcaccacAAGCAACAAAGTGGAGATGCAAGAA
ACAGTTTATTTGAAAGATATCACAACATTTCAATGTCTCACTGATCCCTT
ACAAACCGACAAAAACGGTATCTTCATTTCATAAATTACTGTATCATCAG
AATCTTCCATTGTTTTCCTTTCAAGTTATGTGTTTAAAATTTAGATTTCC
CTTATTCCAACCAATCTCTTCCGACTTATATGCTGAGGGTAACAGAAGAA
ATGTTCGTAGAATTGAAACTTGCAGTTGTGGATGTCAACCGCGAAATGAA
TTCTGCGAAATAAGTCTtgcattttgaaattatattcatcattaattatt
ttgaaaattcaaattcatttcagGCAAAGGAAAATTGGTGGGTGTGAACA
TTAAGTACATCGCAGATAACACCACACGTGAACTCAAGATGCAAGTTAGC
AATGAAATTAGAAATCAAAAAGAGAGTCTAACCTTCCTCATCATGCTACA
AAAGGTATTATTCTGGTTTTCCGTCAATTTGTTTTTAATGATATATCGAT
TACACTTTGGGTAATGAGAAGTTCCGCCGCTAATGACCTTTTTTGTGGGC
GGCTGATTACTTACGACCCCCCATTTCCGACAAAACTTCAGATTTAACAC
CTATCAGTTAAGTTTCGAATGCAGCATGAAACTCACTTTGTATCTGAAAG
AATACAATAAATGATCAAGTTGCAAAGAAGAACAAAGCTTTTCTATTGTA
TCTGCAATGCGAGGAACGGTTGAAAGGATGGCCAAACCTGAATCAATGTG
GTAGTTGGGTTTCAAGTTTGGAACGAAAAAATGGAAAGCATTCCTAGAGT
ATTCAAAAATAGTCTTTTCGAAGTTGGAACAATATTTGCTAAGGGTCTCG
GGAGTTTTCGacacttcttctttttcatcaaattaatccttttacaattt
cttctttatttgtttgtttgttaccTGGTGACTCTGATAGAGGATGTATA
CTTCATTCACACATTTACTTTTTTCATACCTTTCAGGCCATGAAGATGAT
TTTCGATGCGAGTTGATtctcatttttggaacttttgtaCTACAGTAGCG
CAaataaaggttttattttttatgtatttagTAATTTATAGCATTTACAT
TGTTGATAATATTTTAAAGCCAATTcttaattggtgtttctttaaAGCTT
AGACATTGGTCCTTGGAAGCCCTAGCTCAGCATTTATGATAGAGGCTCAG
CTATAGAACCCATCTCGAATTTAAATGAAGGAACTTGAACAAGTTTTGTT
GGGTACATCCGAAACCTAGATTTCGAAGTATTTCTTCACATACTTTTCCC
CGTTTTTCTATTTGATAATCTCCCGACCCTTAACTTGGGAATTTTGAGCC
AATGGTTGAAAACGAGTACAGTCTGAGCTTCTAGTGATTTATTTCAACAA
ACTTAACTTTTTTAGGGTTTCTGGGAGCTTTTTAGGTTAAGCAGATAAGT
TCATTCATGAAAGTCGTTTCGGATGTTTGATATTATCTTTTGTttagaga
tttcttttttattataaaaaaatgtgttatCTTATGTGTAGGATATTGAA
TACCAGGTAAGGCGATATATATTTTCTCCTACGCTTCCCTCTGGACCTTG
GTTTTGTTTCCATCAACTCGAATTTTATCcatcaatatttcaaaactctc
aTGATAAGTTATCATAATATGAGTAGAGCGTGGGTTCTCTTGGTCAAAAG
CAAACGAGCtgtcttttatttgttttcttttctaaacACCCGCTGAACTG
ATATCCAATAAATTTGCcagattttagatttatatTGTCTGAAAAGTATA
GTTTGAAATACTTCTCGTGGTTTGCAAACTGGCAAATGGCAAAagcatct
tttgaaaaaaacaagatAATATATTTTGATGATGGTGGTTTTTTTCTTCC
AACTGAAATTTCCCAAGGATTTTGACCAAGGCTAGCTGTtcataatttgt
tcttaggttttgacaAAGTCTCAGCtccattttcatatttttataaaaat
aagcgTGTATTACCTTCCGACTTTTTTAATAGTTCTTATAACATTTTATA
TAGGTATAGTGAAGCCTTGTTGTTAttggacttttttacaattaattttt
tattgattctaattatttcttatattcatttGAATTTTCTCTAATTTAAT
TTATGATAAGATAATTTTTGAGGGAAAACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005841XLOC_005841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010392-exon-sc0000106-1491911889:70034..70444TCONS_00010392-exon-sc0000106-1491911889:70034..70444Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:70034..70444TCONS_00010392-exon-sc0000106-1510915933:70034..70444Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:70034..70444TCONS_00010392-exon-sc0000106-1575043694:70034..70444Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1491911889:81149..81199TCONS_00010392-exon-sc0000106-1491911889:81149..81199Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:81149..81199TCONS_00010392-exon-sc0000106-1510915933:81149..81199Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:81149..81199TCONS_00010392-exon-sc0000106-1575043694:81149..81199Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1491911889:81475..81643TCONS_00010392-exon-sc0000106-1491911889:81475..81643Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:81475..81643TCONS_00010392-exon-sc0000106-1510915933:81475..81643Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:81475..81643TCONS_00010392-exon-sc0000106-1575043694:81475..81643Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1491911889:81862..81928TCONS_00010392-exon-sc0000106-1491911889:81862..81928Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:81862..81928TCONS_00010392-exon-sc0000106-1510915933:81862..81928Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:81862..81928TCONS_00010392-exon-sc0000106-1575043694:81862..81928Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1491911889:82891..83000TCONS_00010392-exon-sc0000106-1491911889:82891..83000Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:82891..83000TCONS_00010392-exon-sc0000106-1510915933:82891..83000Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:82891..83000TCONS_00010392-exon-sc0000106-1575043694:82891..83000Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1491911889:83257..83387TCONS_00010392-exon-sc0000106-1491911889:83257..83387Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:83257..83387TCONS_00010392-exon-sc0000106-1510915933:83257..83387Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:83257..83387TCONS_00010392-exon-sc0000106-1575043694:83257..83387Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1491911889:83920..85115TCONS_00010392-exon-sc0000106-1491911889:83920..85115Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1510915933:83920..85115TCONS_00010392-exon-sc0000106-1510915933:83920..85115Clytia hemisphaericaexon
TCONS_00010392-exon-sc0000106-1575043694:83920..85115TCONS_00010392-exon-sc0000106-1575043694:83920..85115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:70034..85115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18282	2.13758	13.8175	19.0275	25.6856	19.296	7.08103	7.63796	6.05379	7.39285	5.14148	4.90716	3.52824	3.24427	4.65981	4.70323	4.06547	4.37249	3.37778	3.89318	3.5887	3.58341	5.40685	5.58767	2.93691	3.10652	3.23303	3.24821	4.31395	3.82239
Blast
[Close]
BLAST of TCONS_00010392 vs. Swiss-Prot (Human)
Match: ZFY21 (Zinc finger FYVE domain-containing protein 21 OS=Homo sapiens GN=ZFYVE21 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.108e-38
Identity = 80/236 (33.90%), Postives = 132/236 (55.93%), Query Frame = 1 
Query:  277 TSPTVSSPNGKKLVKTKSGLRMINIIEDERSPFEIEEPIWKPDSDQMICDKCGVRFSFTTRKHHCRRCGKIFCGSCCTAKVSLPRLSFVDPQRVCTDCINVSKSESELFNNVLPILCKGAEFHL----NDQTDVVSCKLEAKLNRNLIFTTSNKVEMQETVYLKDITTFQCLTDPLQTDKNGKGKLVGVNIKYIADNT--TRELKMQVSNEIR-NQKESLTFLIMLQKAMKMIFDA 963
            +S   +  + KKLV++ SGLRM+       SPF +EEP W PD +   C +C  +F F TRKHHCRRCGK FC  CC+ KV L R+ FVDP R C +C  VS  E+E ++  L +L  GA F +    +++ + ++C+L    N+  +F   +     E V+   I+T Q LT+       G  +  G+ ++Y    T    +LK+ V  ++   +++++ +L+ + KA K+++++
Sbjct:    2 SSEVSARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECRRCMQCDAKFDFLTRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSLKEAEFYDKQLKVLLSGATFLVTFGNSEKPETMTCRLSN--NQRYLFLDGDSHYEIEIVH---ISTVQILTEGFPPG-GGNARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLLYES 231
The following BLAST results are available for this feature:
BLAST of TCONS_00010392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFY211.108e-3833.90Zinc finger FYVE domain-containing protein 21 OS=H... [more]
back to top