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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010395 ID=TCONS_00010395|Name=TCONS_00010395|organism=Clytia hemisphaerica|type=transcript|length=2934bpRun BLAST on NCBI protein sequence of TCONS_00010395-protein >TCONS_00010395-protein ID=TCONS_00010395-protein|Name=TCONS_00010395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=849bp MSRGGKQGYENSTQMSKMLPASNIYRVGDYVYVETQPSHPYQIRRIEELTRun BLAST on NCBI transcript from alignment at sc0000106:94464..108866+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010395 ID=TCONS_00010395|Name=TCONS_00010395|organism=Clytia hemisphaerica|type=transcript|length=14403bp|location=Sequence derived from alignment at sc0000106:94464..108866+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000106:94464..108866+ >TCONS_00010395 ID=TCONS_00010395|Name=TCONS_00010395|organism=Clytia hemisphaerica|type=CDS|length=45900bp|location=Sequence derived from alignment at sc0000106:94464..108866+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010395 vs. Swiss-Prot (Human)
Match: MTA3 (Metastasis-associated protein MTA3 OS=Homo sapiens GN=MTA3 PE=1 SV=2) HSP 1 Score: 470.7 bits (1210), Expect = 1.709e-153 Identity = 264/567 (46.56%), Postives = 359/567 (63.32%), Query Frame = 3
Query: 186 ASNIYRVGDYVYVETQPSHPYQIRRIEELTKTSNGQVEAKVSCFYRRRDLSNVLGREADKHVQSAEIEGEINVGSDILSDEQNHQLKLREVFLSRQLEIINANTIRGKCSVTLYSEVEALLDYLKEEDWFYYLLVYDPQQKTLLADRGEIGVGDEYQTEVEDEMAKGELQNNDE--LETLVWDPENPLSDKQVDQFLVISRSIGTFARXXXXXXXXXXXXXXXXXXXXXRDITLFQALTLLHKSNYDVGKASLSLVPDGGPILCRDEMEEWTSGEATLFEEGIRKHGKEFNEIQQEYLPWKSISSIIEYYYMWKTTDKYVQQKRMKAQEGDSKVTQIFIPSS--------NTAINLTLAIQASSQYQVTPSGSLVTPNYMCESCFCKESVLWYPWGPATSSCKLYLCKDCWVYWKKCGGLKKSTKSNESGNDAKEACYKCRICNKKFNRAERLSSHMATHRGYDCTEPGCGKTFNLKAHLTRHLAKAHGIYTL---DSKLKVKTPFVMSPTPYMRATRRLCKATLRLRHFSRSPTDTIDNIEVKNEALKVVTVEKAKSLIDKPLKKR 1847
A+N+YRVGDYVY E S+PY IRRIEEL KT++G VEAKV CFYRRRD+SN L ADKH + E E E V +D L+D+Q HQLK RE+FLSRQ E + A IRGKCSV L +E E++L YL +ED F+Y LVYDP KTLLAD+GEI VG YQ ++ + + +GE ++ LE VWDP +PL+D+Q+DQFLV++R++GTFARALD SSS ++ SLH+SAAAASRDITLF A+ L++ +YD+ A LVP GGP+LCRDEMEEW++ EA+LFEE + K+GK+FN+I+Q++LPWKS++SIIEYYYMWKTTD+YVQQKR+KA E +SK+ Q++IP+ +T+ A+ + P L+ CESC+ +S WY WGP C+ LC CW+YWKK GGLK T+S E E+LS T +P +++H++R + + S +K + F + T + + R++CK TLRLR +R P + + A++ ++ L PLK +
Sbjct: 2 AANMYRVGDYVYFENSSSNPYLIRRIEELNKTASGNVEAKVVCFYRRRDISNTLIMLADKHAKEIEEESETTVEAD-LTDKQKHQLKHRELFLSRQYESLPATHIRGKCSVALLNETESVLSYLDKEDTFFYSLVYDPSLKTLLADKGEIRVGPRYQADIPEMLLEGESDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRLKAAEAESKLKQVYIPTYSKPNPNQISTSNGKPGAVNGAVGTTFQPQNPLL--GRACESCYATQSHQWYSWGPPNMQCR--LCAICWLYWKKYGGLKMPTQSEE----------------------EKLSPSPTTE------DP------RVRSHVSRQAMQGMPVRNTGSPKSAVKTRQAFFLHTTYFTKFARQVCKNTLRLRQAARRPF-----VAINYAAIRAEYADRHAELSGSPLKSK 524 The following BLAST results are available for this feature:
BLAST of TCONS_00010395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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