TCONS_00010398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010398
Unique NameTCONS_00010398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010398 ID=TCONS_00010398|Name=TCONS_00010398|organism=Clytia hemisphaerica|type=transcript|length=2836bp
CGGAAAACTATCAAGAAAAAACGACCGCCAACATCTTCGCTTATCTATTG
GCTTTTCTAAGGGGAACATGCAATCTTGTTTGATCCACTCCATCTTTTGA
GGATGGACGGTAAATCGTATTCTGATTTTAAACGGATTGTTGTCAATGAA
GAAGAACCtgcaataaaaaagaaagtgaagaaatCGAAGAAAACCGCAAA
CAGTGAACCATCTGAAACCTCTTCCAAGCCTActgtgaaaaagaagaaaa
cgactaccaaaacaaagaaagagaaagttcacaatgaaaatgaaagcgaa
gaagaagaagaagctcCCAAAAAGGTGAAAAGTACAAAAGCAAACAAAAC
TGCTAAAGAACCAAAACCTGTAAAGAAAAGTGAGAAAGTCGGAAGCAAAg
agacaaaaaagacaaaagttgaATCAGGATCAGAATCGGATCCAGAAATT
GAGAAACATTCTAAAAAGAATTCTTCACCGAAGAAGACAACTTTGGTACG
CAAGAAGAGTATATCTGTGGCTACCATTTCAACACAAACGGACTTTGATA
CCTctgaagaaaacgaagaaaaatcTAGTGAAAAAGTAGAAACACAATCT
ATAGGAACGGACCCAATTGAAGAAATTCAAATCTCCATTTCAACACCTCC
AAATGATAGTGAAGGTCCAATCATTCGTGTCTCCACCAGTCAGGTTGGCA
AGAAAACTTCAAGTGGACCAATCATTAAAGCCAATGGCCTGATACCTCCG
ACTCCAGACGGTCCTCGTTTTCGTCAAGATGGTAGCCAACTAACATATAC
ACACCCTGGCGTGCAAGCAGAATTAATTGAGAAACTCCATTCTTTTCAAA
CGCAAGGATTCAATTGCGATGTTTTAATGCGAGTTGGTGGAGTGGACTTC
AAAGCGCACAAAATCGTGCTGGCCGCTTCATCACCCTACTTCGCTACGCT
GTTTCGTAAGATGAACAGCATTCGCACAGACCGGTTAATCTTGGAGGGTT
TACAACCGCAATCAGTGGCAGCCATGTTGGGATATTTTTATCTGGCAAAG
TTGATCATTGATGAAGAAGATGTAGAGGAACTGCTTGATGCTGCTCATTA
TTTTCAAaccaatgaagtCATCAAACTATGCACAGATCATTTGGAATTTC
AATTGGGACTCAAAAATTGTTTCCAAATTTTCTCCATCGCTGACCGACAT
CAAATTGATCGATTAAAACTGAAATCGTTTCGTTATATCTGTTGGAATTT
CAAATCGATCGTGAAAGAGGAGTCGTTTTTCTCGATCGATGGTGAATTGT
TGATCCAAATCATCACTTCGGATCAAGTGAAAGTCAAAGCAGAAGAGGAG
GTCTATGAAGCAGTATGGAGTTGGTATTCTTATAACAAAATTGATAGgCA
ATTCTTTTTACCGCAATTGGTCTTGCACATTCACTTCAATTTGATGTCAC
TGGAGTATCTGGAAAACACTGTTAGTAAGGAGTTGTTATTGGAGAGTGAA
CTTTGCCGCAAGAAGATCAGCGAAGCGATCGCAAGCAAGAAAGATGAAGC
AGCAACGAATGAACAGGATCTCAACCGATATCGACAGGTATCAGACAATG
TTTACTTGTTCCAAACAAACTCCCAATCATGTATGCAGCTAGACCTGCTA
CATTGTAAGTGCCAAGACGTACCAGAGTTGGATCTTCCTTCATCCTTGGT
CAGTAGAGATCACCATGTCACTGTGAAAGCAGGAGAACACATCTACACAG
TTTCCAAAAACGCTGTTTGCAGGTTCAACACAAAGAATTTGAGTTGGGAA
TATTTTTGTGAAGGCATTTCTATGTTGGAGTGCGGAATTTGTTCAACCAA
GAACTCCATCTTTGTTGTGGGAGGGAAAGAAGACGGGCGGAGGCTGTGCG
AGTTGAAGATAAGCAGCAAGCAATGGGAAACACTTGCATCAATGGAAGAA
GCCCGCAGATCACCAGCTGTCGCTACAATGGGAAATACAAAACCTCGCAT
TTTTGCTGCCGGTGGATTCTCACCTGAAAAGTCCTGTGTATTGAATTCCA
TGGAATATTACGTTGCTTCTGAAAAAgtatggaaattgatcaagttacCA
ATGTCTGTACCGAGGTTGAGAGCTTCCATTCTGGTCAACGGTGATAAAGT
TTACCTTTTGGGTGGACGTGATGAAGAAAGAAGTCATGATACCATCGATG
TATTCGATAGAACTTcgcaaaaatggttgaaaaataAAGCAGTTTTTAGC
GAAAGTAAGGAGAACTCTTTTGCGCTTTTGTACGAAGGGAAGGTATATTG
CATCGGTGGTAGCGATAAATATACGGTAGATGTGTTGAAAGAGAATGGGA
AATCGTTGAGCTGGCAAACTGTTGGTGTGTTGAGAGAAAGGTTACAAAAC
GTCCAATGTTTTTCTTACGAACCATTGTGATAAAGGTGATGGATGGAAAG
ATGGAGTTTAGGAGTGTGACTTTAAGTCACTATTTTCTTCTCTCGGCAAC
GATAAAATAGTGATAAATTATGCAGATATGATTAGATATTATGCATAACT
AAATGAAATGACGATGAATATTAGCATCGATGATAGGATGTTCAGACGGC
GTTTGAGTATGTCAAGATCCACGAGATCACCGATGAGGAAgcttaatttt
gaattttgaattctaagtttgtataaacgtgttttaaagaatatttcttt
tatttcttaaaCAATTCTTTCTCTAAAGATTTCGTAACACAATTTCTATT
CTAGTTTAGTCACATTTTCTCGACAAATTAGTTTTTGATggactttaacc
ctattcggcctaggggggggggctgtttctgttcgg
Run BLAST on NCBI

protein sequence of TCONS_00010398-protein

>TCONS_00010398-protein ID=TCONS_00010398-protein|Name=TCONS_00010398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=775bp
MDGKSYSDFKRIVVNEEEPAIKKKVKKSKKTANSEPSETSSKPTVKKKKT
TTKTKKEKVHNENESEEEEEAPKKVKSTKANKTAKEPKPVKKSEKVGSKE
TKKTKVESGSESDPEIEKHSKKNSSPKKTTLVRKKSISVATISTQTDFDT
SEENEEKSSEKVETQSIGTDPIEEIQISISTPPNDSEGPIIRVSTSQVGK
KTSSGPIIKANGLIPPTPDGPRFRQDGSQLTYTHPGVQAELIEKLHSFQT
QGFNCDVLMRVGGVDFKAHKIVLAASSPYFATLFRKMNSIRTDRLILEGL
QPQSVAAMLGYFYLAKLIIDEEDVEELLDAAHYFQTNEVIKLCTDHLEFQ
LGLKNCFQIFSIADRHQIDRLKLKSFRYICWNFKSIVKEESFFSIDGELL
IQIITSDQVKVKAEEEVYEAVWSWYSYNKIDRQFFLPQLVLHIHFNLMSL
EYLENTVSKELLLESELCRKKISEAIASKKDEAATNEQDLNRYRQVSDNV
YLFQTNSQSCMQLDLLHCKCQDVPELDLPSSLVSRDHHVTVKAGEHIYTV
SKNAVCRFNTKNLSWEYFCEGISMLECGICSTKNSIFVVGGKEDGRRLCE
LKISSKQWETLASMEEARRSPAVATMGNTKPRIFAAGGFSPEKSCVLNSM
EYYVASEKVWKLIKLPMSVPRLRASILVNGDKVYLLGGRDEERSHDTIDV
FDRTSQKWLKNKAVFSESKENSFALLYEGKVYCIGGSDKYTVDVLKENGK
SLSWQTVGVLRERLQNVQCFSYEPL
Run BLAST on NCBI

transcript from alignment at sc0000106:109267..117013+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010398 ID=TCONS_00010398|Name=TCONS_00010398|organism=Clytia hemisphaerica|type=transcript|length=7747bp|location=Sequence derived from alignment at sc0000106:109267..117013+ (Clytia hemisphaerica)
CGGAAAACTATCAAGAAAAAACGACCGCCAACAGTGGGTATCCCTCCGAG
TTGAGGGAAACCCAATTCAGTTGGTGTGAATAATTTACAACGCTTTTGGT
TTCTTTCAATATATTAATCGTTGTTATATTTACCTACCAACTATTCTTCA
CTGACTTTATTGAAAACTATCATATTCAAAATCCTGAATAATGATGCATA
CATAATTGATATCTTTTAACTTCTATCTCTTTAGTCTTCGCTTATCTATT
GGCTTTTCTAAGGGGAACATGCAATCTTGTTTGATCCACTCCATCTTTTG
AGGGTACAGTATATGATTTACTGTTTCGACTAATTCGAATTTCattatca
agaaaaaaaaagcaaaaccttCAGCAAATGGTTTTTTTGCCTTACTTGAT
TGaaattgataactttggtacaCACTGTAAGAAATAACTGTTACATTTCT
AAGAAGTTTGTGAACTCGCTTCTATTTTCATTATATTCATATATTTTTAG
ATGGACGGTAAATCGTATTCTGATTTTAAACGGATTGTTGTCAATGAAGA
AGAACCtgcaataaaaaagaaagtgaagaaatCGAAGAAAACCGCAAACA
GTGAACCATCTGAAACCTCTTCCAAGCCTActgtgaaaaagaagaaaacg
actaccaaaacaaagaaagagaaagttcacaatgaaaatgaaagcgaaga
agaagaagaagctcCCAAAAAGGTGAAAAGTACAAAAGCAAACAAAACTG
CTAAAGAACCAAAACCTGTAAAGAAAAGTGAGAAAGTCGGAAGCAAAgag
acaaaaaagacaaaagttgaATCAGGATCAGAATCGGATCCAGAAATTGA
GAAACATTCTAAAAAGAATTCTTCACCGAAGAAGACAACTTTGGTACGCA
AGAAGAGTATATCTGTGGCTACCATTTCAACACAAACGGACTTTGATACC
TctgaagaaaacgaagaaaaatcTAGTGAAAAAGTAGAAACACAATCTAT
AGGAACGGACCCAATTGAAGAAATTCAAATCTCCATTTCAACACCTCCAA
ATGATAGTGAAGGTCCAATCATTCGTGTCTCCACCAGTCAGGTTGGCAAG
AAAACTTCAAGTGGACCAATCATTAAAGCCAATGGCCTGATACCTCCGAC
TCCAGACGGTCCTCGTTTTCGTCAAGATGGTAGCCAACTAACATATACAC
ACCCTGGCGTGCAAGCAGAATTAATTGAGAAACTCCATTCTTTTCAAACG
CAAGGATTCAATTGCGATGTTTTAATGCGAGTTGGTGGAGTGGACTTCAA
AGCGCACAAAATCGTGCTGGCCGCTTCATCACCCTACTTCGCTACGCTGT
TTCGTAAGATGAACAGCATTCGCACAGACCGGTTAATCTTGGAGGGTTTA
CAACCGCAATCAGTGGCAGCCATGTTGGGATATTTTTATCTGGCAAAGTT
GATCATTGATGAAGAAGATGTAGAGGAACTGCTTGATGCTGCTCATTATT
TTCAAGTAAGTATTTTCTATAACGCTCCGCCTGTCCcttcttttgctatt
ttttgatttttatagctCTCATGAAAGGACGATTCAGAAAATgtaagtgg
ctctgggtacgatATTATGTTATATCATGACAAAACCTCTGTTATTTTAA
ACGAAAAACATACCTGAAAACTAAACCCAAAGTTTGGGTCTACAGTAACT
ATTTCTGGTGACTTAACCTATATTTTCTTccattttagaccaatgaagtC
ATCAAACTATGCACAGATCATTTGGAATTTCAATTGGGACTCAAAAATTG
TTTCCAAATTTTCTCCATCGCTGACCGACATCAAATTGATCGATTAAAAC
TGAAATCGTTTCGTTATATCTGTTGGAATTTCAAATCGATCGTGAAAGAG
GAGTCGTTTTTCTCGATCGATGGTGAATTGTTGATCCAAATCATCACTTC
GGATCAAGTGAAAGTCAAAGCAGAAGAGGAGGTCTATGAAGCAGTATGGA
GTTGGTATTCTTATAACAAAATTGATAGGTATAGTTTTAACATTAGAGGA
GGTTTATCTTTTCCGGTTCCGTGGGTCGATCTGGGTCATTTGGATATTCC
TTTACCTGACGTTGACGTTTTTTGGATGAATGAATTTCGATTCTGATTTG
TGAACCATACCATATCTTTGTAAAAGTTtggaaagttttttcttttNgcg
gggggggggggggggttatgcccccccaataattttttcaaaaatgatta
ttttgaaaaatgcaaagttttccttttttaatttgtcataattgtcttta
tgtgcatgttttgagtgtatatTTAAGCAATCTagggctcaaattttcaa
aatcccccCCCTCGGGCTAAActatggttggccctcgcggtgtcactaaa
cttcgcagacccccaatatgaaaatgcttcctcgGCACTGTTATCTTTTC
CGGTTCCGTGGGTCGACTTGGGTCGACTTTTTGgataaataaatttcgaa
tCTGATCTGTGAACCATACCATATCTTTGTAAAAGCAAGTTTGGAAAACT
ggaaagttttttcattttttgcaggCAATTCTTTTTACCGCAATTGGTCT
TGCACATTCACTTCAATTTGATGTCACTGGAGTATCTGGAAAACACTGTT
AGTAAGGAGTTGTTATTGGAGAGTGAACTTTGCCGCAAGAAGATCAGCGA
AGCGATCGCAAGCAAGAAAGATGAAGCAGCAACGAATGAACAGGATCTCA
ACCGATATCGACAGGTACATGTTTgccatttttttgcaaatgtcCACCAT
GCAGCTTAAATTTGATTAAGCCAGTTTAGTcctaatattcttataaacaT
CAAAATGTTTGCTTCCCCAAGAAGGGGAATAGACATTCTTCAGTATTTGT
ACTTAATATAGAATGCGTTTCATTCTTTCGACAGGTATCAGACAATGTTT
ACTTGTTCCAAACAAACTCCCAATCATGTATGCAGCTAGACCTGCTACAT
TGTAAGTGCCAAGACGTACCAGAGTTGGATCTTCCTTCATCCTTGGTCAG
TAGAGATCACCATGTCACTGTGAAAGCAGGAGAACACATCTACACAGTTT
CCAAAAACGCTGTTTGCAGGTTCAACACAAAGAATTTGAGTTGGGAATAT
TTTTGTGAAGGTAAATTTACTTCATTCCTATGTTTTTTGACACGTCGATA
AAGTATTGGACAAAGCATTGACAAGTAATATTTCCATCGCAATTTGGAGG
AACAAATTCCACTTCTACTAAATATGGGGCCTAAATACTAATGTGTGAAA
CTAAAATAAAGTTATACtcatcatagtataagaaagccgtgGAATATGTA
CCgtattgtcttttcagttaattgctgttccatctgtctccgagctttat
aagaacatcaagatgatcagtttgttattggtagatagtttttgaaattc
tgctcttattttccttcacaaatttttttttttttgctagatatctttga
atctgtacccaatagaacacttgaactaaatttggacatattttaggggt
attttgtggaaacaatagtttttcaccaaaattgagattataagaactac
cttattggtatatattttcgctNgttacaaattttcgcgggcacttaatt
tcgcgagttttttggtcaattttcgcgaaatttaatactgtttaaatttt
tcaaaattacaaaatcgcgaaattaaatacgcgcgaaaaatttcttctta
gtattttgttagtatttttacataaaaaacgttgtgtttcaagcaaaatc
agtctttttcttgctttatatttccactttctgaaaatacctagtttagt
gaatcgcgaaatttaatacacgcgaaaattttccagaagtcggcaatcgc
gaaatttaatacacgcgaatcacgttttttcgaaaaactttcgcgattcg
cgaaaatttgtaacaggtcaaaatatataccaacaagaatcgcaaaattg
cgactaaatatttccttaaaaatgaaggtcattattgacatatataaaaa
gggATAATTAGCCTTAGTAAAAGAAAGCAAGGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggcgtcagtcagggcg
tacggaaggcgttttgacacgggaaattatggagaaagcccgttttaata
aatatttcccttttggaaagcgggaaatatttaataaggTATATTCAAGA
TGATAACTctcctgtcagtttgaatgatagattttgaaggtgctggcttg
aaattttcacagtattatcttgatgtacattttcattgatttctaaaata
atttcactgaaatattgtgaaggcattcgaggcactttattaatttttga
gttctttcaacccagccattttgtgcttgtttaaatttcttattgttgac
ctttcctttacaatgattttataatgcaagtgtattatcaagcgCATATT
ATTTATGTCTAAAACGCAATGAGAAGTgtcaaaccaataaaatttaccat
taatgatgctacattactgatttcttgatcaacaaatagtcatcaaatac
aaCAGaaatagaacaacagaaatccagatgttatcattccagccgctgct
ttcttatactatgatctCATACCATTCATTTACAGGCATTTCTATGTTGG
AGTGCGGAATTTGTTCAACCAAGAACTCCATCTTTGTTGTGGGAGGGAAA
GAAGACGGGCGGAGGCTGTGCGAGTTGAAGATAAGCAGCAAGCAATGGGA
AACACTTGCATCAATGGAAGAAGCCCGCAGATCACCAGGTATCTTGATCT
GtttctatgtttttttcttgaacCCACTTTTCGTTACGCTTTACGTCCTT
GTAATTCAATAAGCTTTTGGTTTCGATCCCCGGTCGCCGCCGCCCAACTA
ATGGACTTAGAAGCTGAACAATTTTAGCCAAGTCCTGTTATGCTGTTGGA
TCCGGATTACACCTAAACAACCCTTCTCATAACGCTATGAAGTgacaaaa
ttataaattataaattgttgTTGAAAAATACAATGTATAATGTGATTAAT
GTAGTTTATCTTTTCGTCTCTGTAACCTTTTGTCTTTTGTTATTACATGT
AATATAATTGCCTTTTCGAGATTTCTAGACCAATCAAATTATAAGCACAA
AAAGCTGTGCTAGGTCTGCCCTGGTAACCGAGCCTGTTGGTGCAGATATC
GTCATCATAAAAACCAGAAAGGTCGAAGTCAGCAAACTGGTCGACGACGC
CAGGTTTTTTGGGCTAGAGACGTAAATGGNCCAGAAAGGTCGAAGTCAGC
AAACTGGTCGACGACGCCAGGTTTATTGGGCTAGAGACGTAAATGGAGTT
CACATTATCTTTCTTTTATTATTACAGCTGTCGCTACAATGGGAAATACA
AAACCTCGCATTTTTGCTGCCGGTGGATTCTCACCTGAAAAGTCCTGTGT
ATTGAATTCCATGGAATATTACGTTGCTTCTGAAAAAgtatggaaattga
tcaagttacCAATGTCTGTACCGAGGTTGAGAGCTTCCATTCTGGTCAAC
GGTGATAAAGTTTACCTTTTGGGTGGACGTGATGAAGAAAGAAGTCATGA
TACCATCGATGTATTCGATAGAACTTcgcaaaaatggttgaaaaataAAG
CAGTTTTTAGCGAAAGTAAGGAGAACTCTTTTGCGCTTTTGTACGAAGGG
AAGGTATATTGCATCGGTGGTAGCGATAAATATACGGTAGATGTGTTGAA
AGAGAATGGGAAATCGTTGAGCTGGCAAACTGTTGGTGTGTTGAGAGAAA
GGTTACAAAACGTCCAATGTTTTTCTTACGAACCATTGTGATAAAGGTGA
TGGATGGAAAGATGGAGTTTAGGAGTGTGACTTTAAGTCACTATTTTCTT
CTCTCGGCAACGATAAAATAGTGATAAATTATGCAGATATGATTAGATAT
TATGCATAACTAAATGAAATGACGATGAATATTAGCATCGATGATAGGAT
GTTCAGACGGCGTTTGAGTATGTCAAGATCCACGAGATCACCGATGAGGA
Agcttaattttgaattttgaattctaagtttgtataaacgtgttttaaag
aatatttcttttatttcttaaaCAATTCTTTCTCTAAAGATTTCGTAACA
CAATTTCTATTCTAGTTTAGTCACATTTTCTCGACAAATTAGTTTTTGAT
ggactttaaccctattcggcctaggggggggggctgtttctgttcgg

Coding sequence (CDS) from alignment at sc0000106:109267..117013+

>TCONS_00010398 ID=TCONS_00010398|Name=TCONS_00010398|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at sc0000106:109267..117013+ (Clytia hemisphaerica)
ATGGACGGTAAATCGTATTCTGATTTTAAACGGATTGTTGTCAATGAAGA
AGAACCtgcaataaaaaagaaagtgaagaaatCGAAGAAAACCGCAAACA
GTGAACCATCTGAAACCTCTTCCAAGCCTActgtgaaaaagaagaaaacg
actaccaaaacaaagaaagagaaagttcacaatgaaaatgaaagcgaaga
agaagaagaagctcCCAAAAAGGTGAAAAGTACAAAAGCAAACAAAACTG
CTAAAGAACCAAAACCTGTAAAGAAAAGTGAGAAAGTCGGAAGCAAAgag
acaaaaaagacaaaagttgaATCAGGATCAGAATCGGATCCAGAAATTGA
GAAACATTCTAAAAAGAATTCTTCACCGAAGAAGACAACTTTGGTACGCA
AGAAGAGTATATCTGTGGCTACCATTTCAACACAAACGGACTTTGATACC
TctgaagaaaacgaagaaaaatcTAGTGAAAAAGTAGAAACACAATCTAT
AGGAACGGACCCAATTGAAGAAATTCAAATCTCCATTTCAACACCTCCAA
ATGATAGTGAAGGTCCAATCATTCGTGTCTCCACCAGTCAGGTTGGCAAG
AAAACTTCAAGTGGACCAATCATTAAAGCCAATGGCCTGATACCTCCGAC
TCCAGACGGTCCTCGTTTTCGTCAAGATGGTAGCCAACTAACATATACAC
ACCCTGGCGTGCAAGCAGAATTAATTGAGAAACTCCATTCTTTTCAAACG
CAAGGATTCAATTGCGATGTTTTAATGCGAGTTGGTGGAGTGGACTTCAA
AGCGCACAAAATCGTGCTGGCCGCTTCATCACCCTACTTCGCTACGCTGT
TTCGTAAGATGAACAGCATTCGCACAGACCGGTTAATCTTGGAGGGTTTA
CAACCGCAATCAGTGGCAGCCATGTTGGGATATTTTTATCTGGCAAAGTT
GATCATTGATGAAGAAGATGTAGAGGAACTGCTTGATGCTGCTCATTATT
TTCAAaccaatgaagtCATCAAACTATGCACAGATCATTTGGAATTTCAA
TTGGGACTCAAAAATTGTTTCCAAATTTTCTCCATCGCTGACCGACATCA
AATTGATCGATTAAAACTGAAATCGTTTCGTTATATCTGTTGGAATTTCA
AATCGATCGTGAAAGAGGAGTCGTTTTTCTCGATCGATGGTGAATTGTTG
ATCCAAATCATCACTTCGGATCAAGTGAAAGTCAAAGCAGAAGAGGAGGT
CTATGAAGCAGTATGGAGTTGGTATTCTTATAACAAAATTGATAGgCAAT
TCTTTTTACCGCAATTGGTCTTGCACATTCACTTCAATTTGATGTCACTG
GAGTATCTGGAAAACACTGTTAGTAAGGAGTTGTTATTGGAGAGTGAACT
TTGCCGCAAGAAGATCAGCGAAGCGATCGCAAGCAAGAAAGATGAAGCAG
CAACGAATGAACAGGATCTCAACCGATATCGACAGGTATCAGACAATGTT
TACTTGTTCCAAACAAACTCCCAATCATGTATGCAGCTAGACCTGCTACA
TTGTAAGTGCCAAGACGTACCAGAGTTGGATCTTCCTTCATCCTTGGTCA
GTAGAGATCACCATGTCACTGTGAAAGCAGGAGAACACATCTACACAGTT
TCCAAAAACGCTGTTTGCAGGTTCAACACAAAGAATTTGAGTTGGGAATA
TTTTTGTGAAGGCATTTCTATGTTGGAGTGCGGAATTTGTTCAACCAAGA
ACTCCATCTTTGTTGTGGGAGGGAAAGAAGACGGGCGGAGGCTGTGCGAG
TTGAAGATAAGCAGCAAGCAATGGGAAACACTTGCATCAATGGAAGAAGC
CCGCAGATCACCAGCTGTCGCTACAATGGGAAATACAAAACCTCGCATTT
TTGCTGCCGGTGGATTCTCACCTGAAAAGTCCTGTGTATTGAATTCCATG
GAATATTACGTTGCTTCTGAAAAAgtatggaaattgatcaagttacCAAT
GTCTGTACCGAGGTTGAGAGCTTCCATTCTGGTCAACGGTGATAAAGTTT
ACCTTTTGGGTGGACGTGATGAAGAAAGAAGTCATGATACCATCGATGTA
TTCGATAGAACTTcgcaaaaatggttgaaaaataAAGCAGTTTTTAGCGA
AAGTAAGGAGAACTCTTTTGCGCTTTTGTACGAAGGGAAGGTATATTGCA
TCGGTGGTAGCGATAAATATACGGTAGATGTGTTGAAAGAGAATGGGAAA
TCGTTGAGCTGGCAAACTGTTGGTGTGTTGAGAGAAAGGTTACAAAACGT
CCAATGTTTTTCTTACGAACCATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005844XLOC_005844Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010398-proteinTCONS_00010398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010398-exon-sc0000106-1491911889:109267..109299TCONS_00010398-exon-sc0000106-1491911889:109267..109299Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:109267..109299TCONS_00010398-exon-sc0000106-1510915933:109267..109299Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:109267..109299TCONS_00010398-exon-sc0000106-1575043694:109267..109299Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:109501..109569TCONS_00010398-exon-sc0000106-1491911889:109501..109569Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:109501..109569TCONS_00010398-exon-sc0000106-1510915933:109501..109569Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:109501..109569TCONS_00010398-exon-sc0000106-1575043694:109501..109569Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:109767..110771TCONS_00010398-exon-sc0000106-1491911889:109767..110771Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:109767..110771TCONS_00010398-exon-sc0000106-1510915933:109767..110771Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:109767..110771TCONS_00010398-exon-sc0000106-1575043694:109767..110771Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:111005..111294TCONS_00010398-exon-sc0000106-1491911889:111005..111294Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:111005..111294TCONS_00010398-exon-sc0000106-1510915933:111005..111294Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:111005..111294TCONS_00010398-exon-sc0000106-1575043694:111005..111294Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:111841..112030TCONS_00010398-exon-sc0000106-1491911889:111841..112030Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:111841..112030TCONS_00010398-exon-sc0000106-1510915933:111841..112030Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:111841..112030TCONS_00010398-exon-sc0000106-1575043694:111841..112030Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:112201..112426TCONS_00010398-exon-sc0000106-1491911889:112201..112426Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:112201..112426TCONS_00010398-exon-sc0000106-1510915933:112201..112426Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:112201..112426TCONS_00010398-exon-sc0000106-1575043694:112201..112426Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:115402..115554TCONS_00010398-exon-sc0000106-1491911889:115402..115554Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:115402..115554TCONS_00010398-exon-sc0000106-1510915933:115402..115554Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:115402..115554TCONS_00010398-exon-sc0000106-1575043694:115402..115554Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1491911889:116144..117013TCONS_00010398-exon-sc0000106-1491911889:116144..117013Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1510915933:116144..117013TCONS_00010398-exon-sc0000106-1510915933:116144..117013Clytia hemisphaericaexon
TCONS_00010398-exon-sc0000106-1575043694:116144..117013TCONS_00010398-exon-sc0000106-1575043694:116144..117013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:109267..117013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351131	0.342408	0.27524	0.164559	1.4752	1.3672	1.31958	1.36541	2.68578	2.10038	1.21774	2.2036	9.81708	7.36886	4.09504	4.40283	3.72071	4.16692	12.3032	17.5014	7.0249	7.03133	3.32919	4.91314	5.24891	7.38914	1.70366	0.79052	0.64455	0.580335
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011705BACK
IPR006652Kelch_1
IPR015915Kelch-typ_b-propeller
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00010398 vs. Swiss-Prot (Human)
Match: ENC1 (Ectoderm-neural cortex protein 1 OS=Homo sapiens GN=ENC1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.641e-27
Identity = 138/532 (25.94%), Postives = 247/532 (46.43%), Query Frame = 1 
Query:  823 LIEKLHSFQTQGFNCDVLMRVGGVDFKAHKIVLAASSPYFATLFRK--MNSIRTDRLILEGLQPQSVAAMLGYFYLAKXXXXXXXXXXXXXAAHYFQTNEVIKLCTDHLEFQLGLKNCFQIFSIADRHQIDRLKLKSFRYICWNFKSIVKEESFFSIDGELLIQIITSDQXXXXXXXXXXXXXWSWYSYNKIDRQFFLPQLVLHIHFNLMSLEYL-ENTVSKELLLESELCRKKISEAIASK-----KDEAATNEQDLNRYRQVSDNVYLFQTNSQSCMQLDLLHCKCQD-VPELDLPSSLVSRDHHVTVKAGEHIYTV----SKNAVCR----FNTKNLSWEYFCEGISMLEC----GICSTKNSIFVVGG--KEDGRRLCELKISSKQ----------WETLASMEEARRSPAVATMGNTKPRIFAAGGFSPEKSCVLNSMEYYVASEKVWKLIKLPMSVP---RLRASILVNGDKVYLLGGRDEERSHDTIDVFDRTSQKWLKNKAVFSESKENSFALLYEGKVYCIGG 2310
            ++  L+  + Q    DVL+  G   F  H+ VLAA S YF  +F      S  ++      + P+ +  +L Y Y +++II+EE+ E LL+A    +  ++   C + LE  L   NC  +  ++D HQ  +L   S+R    NF++I K E F  +  ++++Q+++S++++ + E  VYE+  +W SY+   R  +LP+L+  +   L+   YL EN   +EL+ +    ++ + EAI  K      D   T+     R R+    ++L    +  C +L L+  K ++ +P+ D+PS    R        G  +Y      S+N V +    ++T +  W    +   ML      G    K+ ++VVGG     G       +S KQ          W  +A + E   + AV +    K ++FA GG S      L  ++ Y   E  W    +P + P   R  A+ ++ G++++++GG D E S  +   F+  + +W K   V +  + +  A+    K+Y +GG
Sbjct:   32 VLTHLNLLRQQRLFTDVLLHAGNRTFPCHRAVLAACSRYFEAMFSGGLKESQDSEVNFDNSIHPEVLELLLDYAYSSRVIINEENAESLLEAGDMLEFQDIRDACAEFLEKNLHPTNCLGMLLLSDAHQCTKLYELSWRMCLSNFQTIRKNEDFLQLPQDMVVQLLSSEELETEDERLVYESAINWISYDLKKRYCYLPELLQTVRLALLPAIYLMENVAMEELITKQRKSKEIVEEAIRCKLKILQNDGVVTSL--CARPRKTGHALFLLGGQTFMCDKLYLVDQKAKEIIPKADIPS---PRKEFSACAIGCKVYITGGRGSENGVSKDVWVYDTLHEEWS---KAAPMLVARFGHGSAELKHCLYVVGGHTAATGCLPASPSVSLKQVEHYDPTINKWTMVAPLREGVSNAAVVS---AKLKLFAFGGTSVSHD-KLPKVQCYDQCENRW---TVPATCPQPWRYTAAAVL-GNQIFIMGG-DTEFSACSAYKFNSETYQWTKVGDV-TAKRMSCHAVASGNKLYVVGG 545
The following BLAST results are available for this feature:
BLAST of TCONS_00010398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ENC11.641e-2725.94Ectoderm-neural cortex protein 1 OS=Homo sapiens G... [more]
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