TCONS_00010481 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010481
Unique Name	TCONS_00010481
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2690

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000106:577035..584321-
coding sequence from alignment at sc0000106:577035..584321-

transcript sequence

>TCONS_00010481 ID=TCONS_00010481|Name=TCONS_00010481|organism=Clytia hemisphaerica|type=transcript|length=2690bp
ctttttcattcattttatcaGTTTTGGTCCAATGAACCAAATTCGATAAG
TGACACTCTAGAATTAAAATTCATCTCCCCTTTCCAGAAGAGAAGGACTC
AAGACTCAAGTCAAAAAACGAAGAATGCTTTTCTTACAATGAGAATCCAG
ATTTGCGTAGTCTATCTAGCTATGTTGTCTTTGGATGGATGCAAATCCCc
atcaaaaatatgttttggacCGGTTCCAGGGGTGAAAGGGCAAGTTTTCT
TGCAGCTTTAATGTATTTTGGTcaaaagttcttcttttttgtaaattttg
tctTGTGATATTGATTTTCTTGTAAAGATGAGCAGAAATAATTTGTCAAA
CTCGGAATTCCCTTTATTGTTAGAAAAAATGTCCGAAAAGTGCTCACCAC
CTGATTTGGATAATTTGTTGAGGTTGGATCCttatttgaacgatttcaaG
ACTGATATTGCAAACAGGTATGCAAGTTTTCACGAGACTCTGGAGCAGAT
CAATCAGAATGAAGGTGGTTTAGACAAATTTTCtgcttcttataaaaact
ttggTCTTGTTGTTCAAAAGGATGGTATCTTGTGTAGAGAGTGGATACCT
GATGTTGTCAACGTGTGGCTGTATGGCGATTTTAatgAGTGGAATAGGAC
ATCacacaaatttgaaaggaaggATTTTGGAAAATGGGAGCTCTTCATAC
CGCTTACATCAGATGGTAAACACCCAATACATCATGCTTCAAAATACAAA
CTATTAGTGGAAGTTGTACAAGGAAACATTGTGGAGCGTCTATCACCCTG
GGCAAGTTACGTTCTGCAAGACAACCAGACCAAATTGTACGAAGCATCCT
TCTGGAACCCTGTCACACCTTTCTCATTCAACAACGCACGACCAAAGAAA
CCTCGAAGTTTAAGAATTTATGAAAGTCATGTGGGTATTGCATCAGCAGA
GTATGGAATTGCAACTTACTCCCAATTCAAGACTAACTTATTGCCTTACA
TCAAAGATCTAGGTTACAATGCTATTCAACTGATGGCCATCATGGAGCAT
GCTTACTATGCATCTTTTGGTTACCAAGTGACCAGCTTTTTTGCTGCTTC
CAGTCGCTACGGCACACCAGATGAGTTAAAAGAATTAATCGATGAAGCAC
ACAGACTGGGTTTGGTTGTATTGCTGGATGTGGTACACAGTCATGCTTCC
AAGAATGTGGCTGATGGTTTGAACCAATTCAATGGAACCAATGGATGTTT
CTTTCATGATAATACACGTGGTTTTCACTCTCTCTGGGATAGTAGACTTT
TCAATTATAAAGActggGAAGTGCTACGATTTCTTCTATCGAACTTGCGT
TGGTATATGGATGAGTACCAGTTCGATGGGTTTCGTTTTGACGGGGTGAC
ATCCATGTTGTATCATCATCACGGAATCGGCACTGGTTTCAGTGGAGGCT
ACCACGAATACTTCTCTATGAATGCCGATGTTGAAGCGGTCAATTACTTA
CAATTAGCCAATCACATGCTGCATGAATTGTACCCTGACGTTATCACCAT
TGCTGAGGATGTGAGTGGAATGCCGGCCCTGTGTAGACCGGTCAATGAAG
GTGGTCTTGGTTTCGATTACCGATTAGCCATGGCTCTTCCTGATATGTGG
ATCAAAATTTTGAAGGAACAAAAGGACGAAGATTGGGATATCGGCAACAT
CGTGCACACGTTGGAGAATCGTCGGTACAAAGAGAAGAATATTTGCTATG
CAGAATCGCACGACCAAGCACTGGTGGGTGACAAGACGTTAGCCTTCTGG
TTGATGGACAAAGAGATGTACACACAAATGTCCACACTGCAACCAATGAA
TGCCATTGTCGATCGTGGAATGGCTCTACATAAAATGATTAGGTTATTGA
CATGCGCATTGGGAGGTGAAGGCTACTTGACGTTCATGGGCAACGAGTTC
GGTCATCCTGAGTGGTTGGATTTCCCAAGGGAAGGGAACCAGGACAGTTA
CCATTACGCAAGGAGACAGTACAATTTAGTGCAAGATCCTATCTTGAGGT
TCGGTCAACTAAAAGAATTCGAAAAAAAGATGTTAATGGTGGATGACAAG
CACCAATTCTTGCCCGCTGACCCAGGCTTTGTTACTTGCAAGAACGGAGG
AGACAAAACGATAGCCTTCGAACGCGCTGGCTTGATCTTCTGTTTCAATT
TCCATCACGATAAAAGTTTCCCTGGATATCCTGTTGGTACTAATCTACCT
GGAAAATACAAAATAATGTTGGACAGTGACAACAAGGACTTCGGTGGTCA
CGGACGATTGGATCCACAATGTCATTATTTGACCGAACAGAAATCATTCA
ACGGACGAGAACATTGTCTCACCGTCTATTTACCCTCACGTACTGCTATT
ATACTTGCCAAAGTCAGCGATTGATCAAAACAAGTCCTAAACAGGATCGA
GATGTCGTCTTCATTTGATATGATGTCTTGTTTTTATCGTGTTTCAGTTT
TTTTACATTATGCATTTctggaattatattttttgtaagaaatttcttaa
agttattgttattgttaaatttttatatgaaacgGAAATTATTATTGGTA
TCATAGAATATAGTATTGTTTTTATACCATAGCTTATTTAATTAATTGat
agtcaatttttttgaaatagaaatGTCTTAAAGCGAAGCG

Run BLAST on NCBI

protein sequence of TCONS_00010481-protein

>TCONS_00010481-protein ID=TCONS_00010481-protein|Name=TCONS_00010481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp
MSRNNLSNSEFPLLLEKMSEKCSPPDLDNLLRLDPYLNDFKTDIANRYAS
FHETLEQINQNEGGLDKFSASYKNFGLVVQKDGILCREWIPDVVNVWLYG
DFNEWNRTSHKFERKDFGKWELFIPLTSDGKHPIHHASKYKLLVEVVQGN
IVERLSPWASYVLQDNQTKLYEASFWNPVTPFSFNNARPKKPRSLRIYES
HVGIASAEYGIATYSQFKTNLLPYIKDLGYNAIQLMAIMEHAYYASFGYQ
VTSFFAASSRYGTPDELKELIDEAHRLGLVVLLDVVHSHASKNVADGLNQ
FNGTNGCFFHDNTRGFHSLWDSRLFNYKDWEVLRFLLSNLRWYMDEYQFD
GFRFDGVTSMLYHHHGIGTGFSGGYHEYFSMNADVEAVNYLQLANHMLHE
LYPDVITIAEDVSGMPALCRPVNEGGLGFDYRLAMALPDMWIKILKEQKD
EDWDIGNIVHTLENRRYKEKNICYAESHDQALVGDKTLAFWLMDKEMYTQ
MSTLQPMNAIVDRGMALHKMIRLLTCALGGEGYLTFMGNEFGHPEWLDFP
REGNQDSYHYARRQYNLVQDPILRFGQLKEFEKKMLMVDDKHQFLPADPG
FVTCKNGGDKTIAFERAGLIFCFNFHHDKSFPGYPVGTNLPGKYKIMLDS
DNKDFGGHGRLDPQCHYLTEQKSFNGREHCLTVYLPSRTAIILAKVSD

Run BLAST on NCBI

transcript from alignment at sc0000106:577035..584321-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010481 ID=TCONS_00010481|Name=TCONS_00010481|organism=Clytia hemisphaerica|type=transcript|length=7287bp|location=Sequence derived from alignment at sc0000106:577035..584321- (Clytia hemisphaerica)
CTTTTTCATTCATTTTATCAGTTTTGGTCCAATGAACCAAATTCGATAAG
TGACACTCTAGAATTAAAATTCATCTCCCCTTTCCAGAAGAGAAGGACTC
AAGACTCAAGTCAAAAAACGAAGAATGCTTTTCTTACAATGAGAATCCAG
ATTTGCGTAGTCTATCTAGCTATGTTGTCTTTGGATGGATGCAAATCCCC
ATCAAAAATATGTTTTGGACCGGTTCCAGGGGTGAAAGGGCAAGTTTTCT
TGCAGCTTTAATGTATTTTGGTCAAAAGTTCTTCTTTTTTGTAAATTTTG
TCTTGTGATATTGATTTTCTTGTAAAGATGAGCAGAAATAATTTGTCAAA
CTCGGAATTCCCTTTATTGTTAGAAAAAATGTCCGAAAAGTGCTCACCAC
CTGATTTGGATAATTTGTTGAGGTTGGATCCTTATTTGAACGATTTCAAG
ACTGATATTGCAAACAGGTGATCTTTAATTTAAAGCCATTATACTCTTTC
TCTTTCTACAAGCTAAAATGCCAATGAAGGAGTTGTTACAAATGAATCTT
GCTATCCTTCTCAAGCAAATTGAATATCTTTTAGACAAAACTAATTTGAA
TTTTGATTTCTCGTACCAGCCAATTTAGAAATCTAATCTTCGTCTCTATG
GAGATGACCATTGAATTTCTTTAGAGGAAATTATTTTTTATTCTAGGTAT
GCAAGTTTTCACGAGACTCTGGAGCAGATCAATCAGAATGAAGGTGGTTT
AGACAAATTTTCTGCTTCTTATAAAAACTTTGGTCTTGTTGTTCAAAAGG
ATGGTATCTTGTGTAGAGAGTGGATACCTGATGTTGTCAACGTGTGGCTG
TATGGCGATTTTAGTAAGTCTTTGTTATCATATAGTTTTTTAAACTTAGA
TTTAAATTTCATTTGACGTGGAACAATCTATTTAGAAGAAGTGATGTTTT
TAACTTTTATTACTAAAATAACAATCGTTCGAACAGATTGTTTGAGGCTA
TGGGAATAGCAGATTCTAATAATTCTACTTCTAATATACTGTTAATAATT
CGCATTTTGCTTTTTTGTTTTAAAGATGAGTGGAATAGGACATCACACAA
ATTTGAAAGGAAGGATTTTGGAAAATGGGAGCTCTTCATACCGCTTACAT
CAGATGGTAAACACCCAATACATCATGCTTCAAAATACAAAGTAAGTAGG
TTAAACCCTTTGCTCACATAATGAAGTTTTTTCTCAAAGGTTATCCTCGT
AACCAGAAAAATAATTGGTTTTACCATTCCACATTTATAAAACTATAGTT
TTTTCCTTAAAATCGTAAGTTTTTGAAACAAAAACTAATAGTATATTTAC
TATTCACTATGAAAAGTGCAGGAAATATATTTAATCTCTTTCATAGCTAT
TAGTGGAAGTTGTACAAGGAAACATTGTGGAGCGTCTATCACCCTGGGCA
AGTTACGTTCTGCAAGACAACCAGACCAAATTGTACGAAGCATCCTTCTG
GAACCCTGTCACACCTTTCTCATTCAACAACGCACGACCAAAGAAACCTC
GAAGTTTAAGAATTTATGAAAGTCATGTGGGTATTGCATCAGCAGAGTAT
GGAATTGCAACTTACTCCCAATTCAAGACTAACTTATTGCCTTACATCAA
AGATCTAGGTAGGTGATATTCCTTTCACACAACATAAAGTAATCCGTTGA
GCTATCAATACTGATAGATGGTCTTGGCATACCCAGACAGAAAATAACAT
TATAACCCAGAAAAGAATTTATGTTGAAATATGGATTCAGTTCAATGTAG
AATAATCCTGACACATTGAAAAAACCTGTTGAAAAAAACTTGAAAAACTC
AGGAATATGAACTACCAAGAAAACGTCTCACTTGTTGTGTGGAAGTCTCT
CCATGAAGGCTACTTACTCATCATCAAAACCTTGAATGTCTCCACTCTAT
GTTTCAGGTTACAATGCTATTCAACTGATGGCCATCATGGAGCATGCTTA
CTATGCATCTTTTGGTTACCAAGTGACCAGCTTTTTTGCTGCTTCCAGGT
ACGAGTATGAGATTTCAAGATTTAGAGGACATTCTTTCTCCTTTTTTGTC
CTTCTGCGTAGCATCTTTAGGACGCAACTTAATTAAGAACGTAAACTTAA
TCGATTAATCAATATTCAACATGACTTAAACATCGTCAAAAAAGGCCAAA
AAAATTACATTGTCTCCAGAAGCTTTCTATTTCATTTCTCTGGAAATGGG
AAATAGAGTGTGTAAGAATTTTATAAATGTAAAATTATGAAAGAAAAGAA
TCTAGATTCGGATCATAGAGTGCTCGATAAGTTAATAGAGCGTTACTTTA
ATAAAGAGTTGNNAAAACGATGGAGAGCGATCATTGTATTTCCTTTGTTT
CAGAAAACAATTGATGTTCTAGCTTTGTCCGCAAAGGACAACTGTCATGG
CGGCTCGAAGATGTCTGATTTTTAAAAATGTTTATCAGTCTTATTTTTAA
AAAGTTCTTTAGCTCTATCTTTTTGTACATTTGCAGAAAAAAAAGTTTGA
AAGTAAGGTTAGTCAAATACATTTGTGAAATCTAATATGAGAAAAACATC
ATTAGACAAGAAATCCAGCCAAAATGCTTATAGTGACACAAAATTTCAAT
TGGAAATATCTTTCCAAGACTGTTATCAGAAGAGCTGAAATTAACATACA
TAAGACTTGAGTGTCTTGGCTCCACTGTAGTATGAAAATCTTTTGGAGGC
ACGTGGTGGCAAGGTGTTTTTTTTGAGGTTGAAGTTTGAAAATTTCCGGT
GTCAACATTAAATTTCTTATACACAACACGTCTTTTGCATCTTTCTCACA
GCTTGAAACGTCATAACGACTTATAATTATCAATTAAGTGGAAGAATCCG
ACTCTCGCAGGAAAGTTTTAAGTCTCTTTTGGGAATTGGATGAGTGATTT
TTGATAAGAAATGCAATAAAAATGCTTCGAAAAATTATTTAATGAGGGAA
GGAGAGTGAACAATACTATCATTACTGCAGACATAGCTAGTACACGAGAA
ATCAGCAAAAATCTGTTACTTGTATATCCAGTGTATAATAAATCCTTGTT
GACACAATATCTGAGATTCGAATCATATAAATATCACTAATTGTAATCTT
TTAATCACCAGTCGCTACGGCACACCAGATGAGTTAAAAGAATTAATCGA
TGAAGCACACAGACTGGGTTTGGTTGTATTGCTGGATGTGGTACACAGTC
ATGCTTCCAAGAATGTGGCTGATGGTTTGAACCAATTCAATGGAACCAAT
GGATGTTTCTTTCATGATAATACACGTGGTTTTCACTCTCTCTGGGATAG
TAGACTTTTCAATTATAAAGAGTAAGTAAGTTTCTTTTCATTAGCAGAGT
TTAAATTTTTAATTACACATTTCATGCAAGCTGAGTATTCTGGCATTTCA
TTCACATAATGGTTATTCGTTTTATGGCCATTCTTCTTAGAAATTGTCAA
CCACAATTTGAGTGATCTATGCGTAATGGAACCGTCTCTCTGTGCGCTCT
CAAATGGTGTATAGATCGTGACGCTCCTAGGAATCACTGTGAATGCATAA
TTACTCGAAGAGCACTTGATAAGACACATATTTTTCTTTTTAGCTGGGAA
GTGCTACGATTTCTTCTATCGAACTTGCGTTGGTATATGGATGAGTACCA
GTTCGATGGGTTTCGTTTTGACGGGGTGACATCCATGTTGTATCATCATC
ACGGAATCGGCACTGGTTTCAGTGGAGGCTACCACGAATACTTCTCTATG
AATGCCGATGTTGAAGCGGTCAATTACTTACAATTAGCCAATCACATGCT
GCATGAATTGTACCCTGACGTTATCACCATTGCTGAGGTACGCATCTAAA
GGAAGGTTGCTTACCCCACTTACCTTTGACCTTTTTTTCTACTTATAAGA
TACCTCGTCATTTTTTTATCAAGGACCAATTTTTAAGTCTCTTGAGTCCA
CAACCTTTCGCTCGGTAGCTGAAAGCACCAACTCTACATGAAAGTTTATA
TCTTTAGATGCACGAAGTAACTTTTGATGCACATTCGTATTACACCTTAG
TATTTTTGCTCGTAGTTAGTTTTGACAGATTGTCAGTTCTCCATGTGGTG
TAGTGACCATAAAAGGTTTATACTTCAAAGAGCCATCCACTGCACAAACA
AGTTCTTTTAGTTCGGATTCTGTTTTATTCATTTTGTTTGACAGGATGTG
AGTGGAATGCCGGCCCTGTGTAGACCGGTCAATGAAGGTGGTCTTGGTTT
CGATTACCGATTAGCCATGGCTCTTCCTGATATGTGGATCAAAGTAAGAG
CACACTTCTTTTGAACAAATTTTCTATATGCAGCTTTATGTAACCTTACG
ATAAATGTTTAAATCCGACTGGATTCAATACTTATAAGAAGAACTCCTTT
CAATGATACATATGTTTCTATAGAAGTCGCTTAGAAGGATGAAGAAAATA
ATTGAACACAATTTTTTTTCCTAAAAGATAATCATTTTCTCCCTCAGATT
TTGAAGGAACAAAAGGACGAAGATTGGGATATCGGCAACATCGTGCACAC
GTTGGAGAATCGTCGGTACAAAGAGAAGAATATTTGCTATGCAGAATCGC
ACGACCAAGCACTGGTGGGTGACAAGACGTTAGCCTTCTGGTTGATGGAC
AAAGAGATGTACACACAAATGTCCACACTGCAACCAATGAATGCCATTGT
CGATCGTGGAATGGCTCTACATAAAATGATTAGGTACGACTCTTTACAGT
TCTTCTCACTGCTATCTTTCTGTCAACTAGCATTAGAGTAGACTAAAGCA
AAAGTCTTAACTATCATTAACCTAAACATTAAAACCCATTCGCTATTTTC
GCTTTCATTGACCCAAAATCTATACAGTTTTGAAAGTTTTGACCTTTTTA
GATCATCAAAGCCTTAAAGAGGCTGGGGTAGTGTATACAGAATGGGTGAT
CTGTTATTAGATTACGAAAAAGCTTACTATTATTTACAGAATATATAATT
TCTATAGGTTATTGACATGCGCATTGGGAGGTGAAGGCTACTTGACGTTC
ATGGGCAACGAGTTCGGTCATCCTGAGTGGTTGGATTTCCCAAGGGAAGG
GAACCAGGACAGTTACCATTACGCAAGGAGACAGTACAATTTAGTGCAAG
ATCCTATCTTGAGGTTCGGTCAACTAAAAGAATTCGAAAAAAAGATGTTA
ATGGTGGATGACAAGCACCAATTCTTGCCCGCTGACCCAGTAAGTATTTA
TTACCTGTAGTTAAAAACAGTTCCAAATAATTCGACCTCGTCAACACTTC
ATTGTTTCGTTACATTATTTGCATTTTATGACATTATAATTTGCCTACTT
TTTAAGTGAAATGCTTTTATCATCCGATGTGCATAGAATGCAGAGGGGTA
CAGACCCAAGCAATCTTTAAGGAGAGGGGCTAACAAAAATAGCCCCAGCT
AAATTTAAGAATGTAGCCCCCACCTAAAGGAAAATCCAAAAAATTGTGCT
TGAGAGTTTTTGAAGCAAAATAATCAAAAAGGTCACCTAAATAAAATATC
GATTATTTTGTATACTGATGATAATTATTATATCATTTGAAAAAATCAAG
CGACTTTAACCAGAATATTTTGATTGTTTCAACAGAAGTATTTAGGTATT
TTAAATGTATTTTTTAATTGACAGGGCTTTGTTACTTGCAAGAACGGAGG
AGACAAAACGATAGCCTTCGAACGCGCTGGCTTGATCTTCTGTTTCAATT
TCCATCACGATAAAAGTTTCCCTGGATATCCTGTTGGTACTAATCTACCT
GGAAAGTAAGGGAGTGTTTCCTCAGATTCTTTTTCAGTGATCTTTTAGTG
ATTAGTGACGGAATTTTAAGGACACTAGATCCACATAGTGAATTTTATAA
TTCTTATACCTAAAATCCATATATTGCAGTATATTGACTACAGCCTCAGG
TTAAATTTGTTGGTAATTGATTTCGCTTTTAGTTTCAGATTGTGTCATTT
TTTCTCTTTATCAGATACAAAATAATGTTGGACAGTGACAACAAGGACTT
CGGTGGTCACGGACGATTGGATCCACAATGTCATTATTTGACCGAACAGA
AATCATTCAACGGACGAGAACATTGTCTCACCGTAAGTCTCGATCCTTTT
CTAATGTCCAACCATACTAAACAAGTCACTGAAAAATCTCAGTATGCAAA
TGGATGCTGATCGGACATAATGGAATATGTATAATAATTTTATTTTCACG
TCCATGACATGAGTAGTTAGTACACCGTGCACTATAGCTGATATCAAGTT
CTCTCTCTACTCTATTTACACCATATCAATTCCATTCTCCACTGCACCCT
TTAAAAGAACGTTTCACATTCCATGGAAGTTTTCAAATGAATACTTCAGA
ACGGCACTAACTACCTCAGCACTAACTGCTTATTCATTTGATTCATCTCC
CTTATTCAGGGATTGCATCACGCTATTGTGCTGGGAAAGTACCAATACTG
TCTAATCTATTTTATGCACATTAATTAGACTATATAAGTCCATCCAGGCT
CTAAATTGATTATAGTTAATTAAGAGCTTGAACAAGTTAAAATAAACATA
ACATAGGTGCTAAGAAATGAGTGTGGCAAAGAAACTAGAAAGAAACAGAA
CCTCTGTAGAAATGGAGGATTCAGAAGAAAGAAACGCCACGCAAGACCGT
TTTTTGAGCTATGAAAAAAAAAATAAGTGGGTTAGGAAGTACCCAAGTTA
AGCAGTCGAAGATGGAGAAGAGAGTTTCATTTCATAGATCTTTAAGGTGA
GTGCAATTATTAGATTTGTTTTGTCTTAGATCGCAAATTCAAAAAGTAAG
TACTTTTGTTCAGACAAAGTTATGGAGCGAATTTTCTTCTGAGACATGAC
ACTTATTTCCCTTCTTTTAGGTCTATTTACCCTCACGTACTGCTATTATA
CTTGCCAAAGTCAGCGATTGATCAAAACAAGTCCTAAACAGGATCGAGAT
GTCGTCTTCATTTGATATGATGTCTTGTTTTTATCGTGTTTCAGTTTTTT
TACATTATGCATTTCTGGAATTATATTTTTTGTAAGAAATTTCTTAAAGT
TATTGTTATTGTTAAATTTTTATATGAAACGGAAATTATTATTGGTATCA
TAGAATATAGTATTGTTTTTATACCATAGCTTATTTAATTAATTGATAGT
CAATTTTTTTGAAATAGAAATGTCTTAAAGCGAAGCG

Coding sequence (CDS) from alignment at sc0000106:577035..584321-

>TCONS_00010481 ID=TCONS_00010481|Name=TCONS_00010481|organism=Clytia hemisphaerica|type=CDS|length=2097bp|location=Sequence derived from alignment at sc0000106:577035..584321- (Clytia hemisphaerica)
ATGAGCAGAAATAATTTGTCAAACTCGGAATTCCCTTTATTGTTAGAAAA
AATGTCCGAAAAGTGCTCACCACCTGATTTGGATAATTTGTTGAGGTTGG
ATCCTTATTTGAACGATTTCAAGACTGATATTGCAAACAGGTATGCAAGT
TTTCACGAGACTCTGGAGCAGATCAATCAGAATGAAGGTGGTTTAGACAA
ATTTTCTGCTTCTTATAAAAACTTTGGTCTTGTTGTTCAAAAGGATGGTA
TCTTGTGTAGAGAGTGGATACCTGATGTTGTCAACGTGTGGCTGTATGGC
GATTTTAATGAGTGGAATAGGACATCACACAAATTTGAAAGGAAGGATTT
TGGAAAATGGGAGCTCTTCATACCGCTTACATCAGATGGTAAACACCCAA
TACATCATGCTTCAAAATACAAACTATTAGTGGAAGTTGTACAAGGAAAC
ATTGTGGAGCGTCTATCACCCTGGGCAAGTTACGTTCTGCAAGACAACCA
GACCAAATTGTACGAAGCATCCTTCTGGAACCCTGTCACACCTTTCTCAT
TCAACAACGCACGACCAAAGAAACCTCGAAGTTTAAGAATTTATGAAAGT
CATGTGGGTATTGCATCAGCAGAGTATGGAATTGCAACTTACTCCCAATT
CAAGACTAACTTATTGCCTTACATCAAAGATCTAGGTTACAATGCTATTC
AACTGATGGCCATCATGGAGCATGCTTACTATGCATCTTTTGGTTACCAA
GTGACCAGCTTTTTTGCTGCTTCCAGTCGCTACGGCACACCAGATGAGTT
AAAAGAATTAATCGATGAAGCACACAGACTGGGTTTGGTTGTATTGCTGG
ATGTGGTACACAGTCATGCTTCCAAGAATGTGGCTGATGGTTTGAACCAA
TTCAATGGAACCAATGGATGTTTCTTTCATGATAATACACGTGGTTTTCA
CTCTCTCTGGGATAGTAGACTTTTCAATTATAAAGACTGGGAAGTGCTAC
GATTTCTTCTATCGAACTTGCGTTGGTATATGGATGAGTACCAGTTCGAT
GGGTTTCGTTTTGACGGGGTGACATCCATGTTGTATCATCATCACGGAAT
CGGCACTGGTTTCAGTGGAGGCTACCACGAATACTTCTCTATGAATGCCG
ATGTTGAAGCGGTCAATTACTTACAATTAGCCAATCACATGCTGCATGAA
TTGTACCCTGACGTTATCACCATTGCTGAGGATGTGAGTGGAATGCCGGC
CCTGTGTAGACCGGTCAATGAAGGTGGTCTTGGTTTCGATTACCGATTAG
CCATGGCTCTTCCTGATATGTGGATCAAAATTTTGAAGGAACAAAAGGAC
GAAGATTGGGATATCGGCAACATCGTGCACACGTTGGAGAATCGTCGGTA
CAAAGAGAAGAATATTTGCTATGCAGAATCGCACGACCAAGCACTGGTGG
GTGACAAGACGTTAGCCTTCTGGTTGATGGACAAAGAGATGTACACACAA
ATGTCCACACTGCAACCAATGAATGCCATTGTCGATCGTGGAATGGCTCT
ACATAAAATGATTAGGTTATTGACATGCGCATTGGGAGGTGAAGGCTACT
TGACGTTCATGGGCAACGAGTTCGGTCATCCTGAGTGGTTGGATTTCCCA
AGGGAAGGGAACCAGGACAGTTACCATTACGCAAGGAGACAGTACAATTT
AGTGCAAGATCCTATCTTGAGGTTCGGTCAACTAAAAGAATTCGAAAAAA
AGATGTTAATGGTGGATGACAAGCACCAATTCTTGCCCGCTGACCCAGGC
TTTGTTACTTGCAAGAACGGAGGAGACAAAACGATAGCCTTCGAACGCGC
TGGCTTGATCTTCTGTTTCAATTTCCATCACGATAAAAGTTTCCCTGGAT
ATCCTGTTGGTACTAATCTACCTGGAAAATACAAAATAATGTTGGACAGT
GACAACAAGGACTTCGGTGGTCACGGACGATTGGATCCACAATGTCATTA
TTTGACCGAACAGAAATCATTCAACGGACGAGAACATTGTCTCACCGTCT
ATTTACCCTCACGTACTGCTATTATACTTGCCAAAGTCAGCGATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005869	XLOC_005869	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010481-protein	TCONS_00010481-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000106	supercontig	sc0000106:577035..584321 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
70.741	73.3761	7.98213	2.83541	10.0084	8.01546	13.7701	14.5265	15.9062	20.2547	15.183	9.25691	19.4676	16.9581	31.6188	54.3833	35.7146	26.8469	7.58529	10.9597	15.6923	16.6099	36.202	38.1002	17.9323	19.1557	34.9608	28.1664	60.6931	43.5962

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006047	Glyco_hydro_13_cat_dom
IPR006048	A-amylase/branching_C
IPR004193	Glyco_hydro_13_N
IPR013783	Ig-like_fold
IPR006407	GlgB
IPR014756	Ig_E-set
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process
GO:0005978	glycogen biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0043169	cation binding
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003844	1,4-alpha-glucan branching enzyme activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0005978	glycogen biosynthetic process
molecular_function	GO:0003844	1,4-alpha-glucan branching enzyme activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0043169	cation binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Blast

[Close]

BLAST of TCONS_00010481 vs. Swiss-Prot (Human)
Match: GLGB (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3)

HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0
Identity = 399/658 (60.64%), Postives = 500/658 (75.99%), Query Frame = 1

Query:  445 FKTDIANRYASFHETLEQINQNEGGLDKFSASYKNFGLVVQKDGIL-CREWIPDVVNVWLYGDFNEWNRTSHKFERKDFGKWELFIPLTSDGKHPIHHASKYKLLVEVVQGNIVERLSPWASYVLQDNQTKLYEASFWNPVTPFSFNNARPKKPRSLRIYESHVGIASAEYGIATYSQFKTNLLPYIKDLGYNAIQLMAIMEHAYYASFGYQVTSFFAASSRYGTPDELKELIDEAHRLGLVVLLDVVHSHASKNVADGLNQFNGTNGCFFHDNTRGFHSLWDSRLFNYKDWEVLRFLLSNLRWYMDEYQFDGFRFDGVTSMLYHHHGIGTGFSGGYHEYFSMNADVEAVNYLQLANHMLHELYPDVITIAEDVSGMPALCRPVNEGGLGFDYRLAMALPDMWIKILKEQKDEDWDIGNIVHTLENRRYKEKNICYAESHDQALVGDKTLAFWLMDKEMYTQMSTLQPMNAIVDRGMALHKMIRLLTCALGGEGYLTFMGNEFGHPEWLDFPREGNQDSYHYARRQYNLVQDPILRFGQLKEFEKKMLMVDDKHQFLPADPGFVTCKNGGDKTIAFERAGLIFCFNFHHDKSFPGYPVGTNLPGKYKIMLDSDNKDFGGHGRLDPQCHYLTEQKSFNGREHCLTVYLPSRTAIILAKV 2415
            +  D   RY  F + L+ I +NEGG+DKFS  Y++FG+    DG L C+EW P    V+L GDFN WN  S+ +++ D+GKWEL+IP   +    + H SK K+++    G I+ R+SPWA YV+++     Y+   W+P   + F ++RPKKPRSLRIYESHVGI+S E  +A+Y  F  N+LP IK LGYN IQLMAIMEHAYYASFGYQ+TSFFAASSRYGTP+EL+EL+D AH +G++VLLDVVHSHASKN ADGLN F+GT+ C+FH   RG H LWDSRLF Y  WE+LRFLLSN+RW+++EY+FDGFRFDGVTSMLYHHHG+G GFSG Y EYF +  D +A+ YL LANH++H L PD ITIAEDVSGMPALC P+++GG GFDYRLAMA+PD WI++LKE KDEDW++G+IV+TL NRRY EK I YAESHDQALVGDK+LAFWLMD EMYT MS L P   ++DRG+ LHKMIRL+T  LGGEGYL FMGNEFGHPEWLDFPR+GN +SYHYARRQ++L  D +LR+  L  F++ M  +++++ +L A   +V+ K+ G+K IAFERAGL+F FNFH  KS+  Y VGT LPGK+KI+LDSD  ++GGH RLD    + +E    NGR + L VY+PSR A+IL  V
Sbjct:   41 YAVDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNV 698

The following BLAST results are available for this feature:

BLAST of TCONS_00010481 vs. Swiss-Prot (Human)

BLAST of TCONS_00010481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLGB	0.000e+0	60.64	1,4-alpha-glucan-branching enzyme OS=Homo sapiens ...	[more]

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TCONS_00010481 (transcript) - C. hemisphaerica