TCONS_00010483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010483
Unique NameTCONS_00010483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010483 ID=TCONS_00010483|Name=TCONS_00010483|organism=Clytia hemisphaerica|type=transcript|length=397bp
CCAAAACCCACACGCACAAATAAGGCCGCTGCTCACAGTGGAATCAACAT
AAAGCATTGATTTTTTGCACCTAATCCTCTTATTTAATTTATTAGCTATG
CATAATGTAGTTGCAAACTTAAGCTTTGAATAACCACCTAGTGTACTACA
TAAACCACATTATGTGTACCCCAAAACCCACATCAGctttttggaatttc
aataaTTTGAGCGATAAAACGCAAAAGAATATTATGTAGCCAATGTTTCC
ATGTACATTTTGGGACTGTTTGTCATAAACTATTCCTTTTTTCTTGATCT
ATTTTGAGTTATCTCAAGtttacagttttttttttagttaaaatCATATT
AAAAAAGATAGACAACACAATGAAGCCAAAGTTTAGCTTAAGTTAAG
Run BLAST on NCBI

transcript from alignment at sc0000106:4166..4562

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010483 ID=TCONS_00010483|Name=TCONS_00010483|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0000106:4166..4562 (Clytia hemisphaerica)
CTTAACTTAAGCTAAACTTTGGCTTCATTGTGTTGTCTATCTTTTTTAAT
ATGattttaactaaaaaaaaaactgtaaaCTTGAGATAACTCAAAATAGA
TCAAGAAAAAAGGAATAGTTTATGACAAACAGTCCCAAAATGTACATGGA
AACATTGGCTACATAATATTCTTTTGCGTTTTATCGCTCAAAttattgaa
attccaaaaagCTGATGTGGGTTTTGGGGTACACATAATGTGGTTTATGT
AGTACACTAGGTGGTTATTCAAAGCTTAAGTTTGCAACTACATTATGCAT
AGCTAATAAATTAAATAAGAGGATTAGGTGCAAAAAATCAATGCTTTATG
TTGATTCCACTGTGAGCAGCGGCCTTATTTGTGCGTGTGGGTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005871XLOC_005871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010483-exon-sc0000106-1491911889:4166..4562TCONS_00010483-exon-sc0000106-1491911889:4166..4562Clytia hemisphaericaexon
TCONS_00010483-exon-sc0000106-1510915933:4166..4562TCONS_00010483-exon-sc0000106-1510915933:4166..4562Clytia hemisphaericaexon
TCONS_00010483-exon-sc0000106-1575043694:4166..4562TCONS_00010483-exon-sc0000106-1575043694:4166..4562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:4166..4562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188711	0	0.854675	1.46329	0	0	0	0.227136	0.159023	0	0.19119	0	0	0	0.107157	0	0	0	0	0	0.182457	0	0	0	0	0	0	0	0	0.213401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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