TCONS_00010484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010484
Unique NameTCONS_00010484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010484 ID=TCONS_00010484|Name=TCONS_00010484|organism=Clytia hemisphaerica|type=transcript|length=498bp
AGTACTAACTGCATTTCCTAGGAAGCTCTGACTACCAGATCTTCTTTCCA
AAGGCTTAATATGcgcttttttgtttgaaatctgTTCTTGGTTAGCTCTA
ATTTTGCTTCTGTTTTTCTGTGTCGTGCCGTTCTTTTAGAATCGTTGATG
TTTACATAATCCGTTTTCGCTATAGAAACGGggaaaatttcccgattttg
cAGACAAAGATGGTAGATGAGGAGCGATGTTGAATTTGTTGATCAGTGTT
GATTGCTGGAATGTTTTTATTTCCAGATGttttcagatatttttatgAAT
GTGCTGGAATTTGTAATTATCTACAGATCTATATACTGTTTTACACTGTT
TGATATATGATAAGGATAAGATTTAGTCTAACCTACATTAACCTTTATAA
TTAACTTTTATAATTCTAGACTAGAAAACTAATACATAATTATGACAAAA
TGTCCACACTGCAAGAAGACATTTGAATATGGTGGAATTAATCAGACG
Run BLAST on NCBI

transcript from alignment at sc0000106:120253..120750

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010484 ID=TCONS_00010484|Name=TCONS_00010484|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000106:120253..120750 (Clytia hemisphaerica)
CGTCTGATTAATTCCACCATATTCAAATGTCTTCTTGCAGTGTGGACATT
TTGTCATAATTATGTATTAGTTTTCTAGTCTAGAATTATAAAAGTTAATT
ATAAAGGTTAATGTAGGTTAGACTAAATCTTATCCTTATCATATATCAAA
CAGTGTAAAACAGTATATAGATCTGTAGATAATTACAAATTCCAGCACAT
TcataaaaatatctgaaaaCATCTGGAAATAAAAACATTCCAGCAATCAA
CACTGATCAACAAATTCAACATCGCTCCTCATCTACCATCTTTGTCTgca
aaatcgggaaattttccCCGTTTCTATAGCGAAAACGGATTATGTAAACA
TCAACGATTCTAAAAGAACGGCACGACACAGAAAAACAGAAGCAAAATTA
GAGCTAACCAAGAAcagatttcaaacaaaaaagcgCATATTAAGCCTTTG
GAAAGAAGATCTGGTAGTCAGAGCTTCCTAGGAAATGCAGTTAGTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005872XLOC_005872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010484-exon-sc0000106-1491911889:120253..120750TCONS_00010484-exon-sc0000106-1491911889:120253..120750Clytia hemisphaericaexon
TCONS_00010484-exon-sc0000106-1510915933:120253..120750TCONS_00010484-exon-sc0000106-1510915933:120253..120750Clytia hemisphaericaexon
TCONS_00010484-exon-sc0000106-1575043694:120253..120750TCONS_00010484-exon-sc0000106-1575043694:120253..120750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:120253..120750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72655	0.687983	2.46706	4.16062	0.281073	0.654096	0.315656	0.708303	0	0.768821	0	0.299758	0.0906439	0.339153	0.0697074	0.0748067	0.32199	0	0	0.164452	0.424153	0.194866	0.281509	0.489988	0.395407	0.140272	0	0.179645	0.136254	0.416465
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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