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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010498 ID=TCONS_00010498|Name=TCONS_00010498|organism=Clytia hemisphaerica|type=transcript|length=955bp
CATTGGTTACAGGGGAATCCCATGAAGTTATACCGTATGTCAGATGTGAG
TTCACTAAGGCATAAAAAAGAGATATCATATTCTTTCTAGGAAGAAACCA
GCCAACTTTGTGAAGAATACCTATATTCTGCTTAATTCTTGTGTGCAGTC
TCTTGAGGTGTTCTCTCCAGCTCAGTTTATGATCAATGATTACTCCAAGG
TATTTAGCTTCATTGACATGGTTCAGAGTCTGACCTGAAATAGAAATGtt
gaaattagtttgtttgtGCTCACTGAAGATCATATAGTTGGATTTAGAGA
TATTTAGAGTAAGTTGATTAGCTCCTAGCCAGTCTGAAATCTTGCCAACC
TCAACATTAATAAGATTTTGAAGAGCTTCAGGGTTTTTATGACTCATAAA
AAGACACGTATCGTCAGCAAACAACGTCTGTGAGAATGATGAATTAAATC
GCAGGTCATTAATATAAATCAAGAAAAGAAGGGGACCAAGCACTGAACCT
TGGGAGACCCCGTGAGACATGGATAAGGGTGTTGAATTAGCGTCGTTGCG
GTAAACGCTTTGTTTTCTGTTTGCAAGATAACTTCGAAACCATGATAGAA
CAGGACCCCTTATTccaattttttcgattttttttagcAGTATTGCATGA
TTAACTGTATCAAAGGCTTTTGCCAGATCGAGGAAGATTGCACAACCAGt
ctctttgtttttttgcaTTATTGCATGATTAACTGTATCAAAGGCTTTTG
CCAGATCGAGGAAGATTGCACAACCAGtctctttgtttttttgcaTTTGT
AGATAAAATTTGTTAGATGTAGGATTGCACAAGAGGTAGACTTACCTTTC
TGGAACCCATATTGaccatcaaataaaattttgttcTTGTCTAGAAATTC
AGTAATTCTCTCATGGACAATTTTCTCAAAGAtcttatcgaataatggaa
ggACT Run BLAST on NCBI protein sequence of TCONS_00010498-protein >TCONS_00010498-protein ID=TCONS_00010498-protein|Name=TCONS_00010498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MQKNKETGCAIFLDLAKAFDTVNHAIMQKNKETGCAIFLDLAKAFDTVNH
AILLKKIEKIGIRGPVLSWFRSYLANRKQSVYRNDANSTPLSMSHGVSQG
SVLGPLLFLIYINDLRFNSSFSQTLFADDTCLFMSHKNPEALQNLINVEV
GKISDWLGANQLTLNISKSNYMIFSEHKQTNFNISISGQTLNHVNEAKYL
GVIIDHKLSWREHLKRLHTRIKQNIGILHKVGWFLPRKNMISLFYALVNS
HLTYGITSWDSPVTN Run BLAST on NCBI transcript from alignment at sc0000106:313692..314646 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010498 ID=TCONS_00010498|Name=TCONS_00010498|organism=Clytia hemisphaerica|type=transcript|length=955bp|location=Sequence derived from alignment at sc0000106:313692..314646 (Clytia hemisphaerica)
AGTccttccattattcgataagaTCTTTGAGAAAATTGTCCATGAGAGAA
TTACTGAATTTCTAGACAAgaacaaaattttatttgatggtCAATATGGG
TTCCAGAAAGGTAAGTCTACCTCTTGTGCAATCCTACATCTAACAAATTT
TATCTACAAAtgcaaaaaaacaaagagaCTGGTTGTGCAATCTTCCTCGA
TCTGGCAAAAGCCTTTGATACAGTTAATCATGCAATAAtgcaaaaaaaca
aagagaCTGGTTGTGCAATCTTCCTCGATCTGGCAAAAGCCTTTGATACA
GTTAATCATGCAATACTgctaaaaaaaatcgaaaaaattggAATAAGGGG
TCCTGTTCTATCATGGTTTCGAAGTTATCTTGCAAACAGAAAACAAAGCG
TTTACCGCAACGACGCTAATTCAACACCCTTATCCATGTCTCACGGGGTC
TCCCAAGGTTCAGTGCTTGGTCCCCTTCTTTTCTTGATTTATATTAATGA
CCTGCGATTTAATTCATCATTCTCACAGACGTTGTTTGCTGACGATACGT
GTCTTTTTATGAGTCATAAAAACCCTGAAGCTCTTCAAAATCTTATTAAT
GTTGAGGTTGGCAAGATTTCAGACTGGCTAGGAGCTAATCAACTTACTCT
AAATATCTCTAAATCCAACTATATGATCTTCAGTGAGCacaaacaaacta
atttcaaCATTTCTATTTCAGGTCAGACTCTGAACCATGTCAATGAAGCT
AAATACCTTGGAGTAATCATTGATCATAAACTGAGCTGGAGAGAACACCT
CAAGAGACTGCACACAAGAATTAAGCAGAATATAGGTATTCTTCACAAAG
TTGGCTGGTTTCTTCCTAGAAAGAATATGATATCTCTTTTTTATGCCTTA
GTGAACTCACATCTGACATACGGTATAACTTCATGGGATTCCCCTGTAAC
CAATG Coding sequence (CDS) from alignment at sc0000106:313692..314646 >TCONS_00010498 ID=TCONS_00010498|Name=TCONS_00010498|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000106:313692..314646 (Clytia hemisphaerica)
AtgcaaaaaaacaaagagaCTGGTTGTGCAATCTTCCTCGATCTGGCAAA
AGCCTTTGATACAGTTAATCATGCAATAAtgcaaaaaaacaaagagaCTG
GTTGTGCAATCTTCCTCGATCTGGCAAAAGCCTTTGATACAGTTAATCAT
GCAATACTgctaaaaaaaatcgaaaaaattggAATAAGGGGTCCTGTTCT
ATCATGGTTTCGAAGTTATCTTGCAAACAGAAAACAAAGCGTTTACCGCA
ACGACGCTAATTCAACACCCTTATCCATGTCTCACGGGGTCTCCCAAGGT
TCAGTGCTTGGTCCCCTTCTTTTCTTGATTTATATTAATGACCTGCGATT
TAATTCATCATTCTCACAGACGTTGTTTGCTGACGATACGTGTCTTTTTA
TGAGTCATAAAAACCCTGAAGCTCTTCAAAATCTTATTAATGTTGAGGTT
GGCAAGATTTCAGACTGGCTAGGAGCTAATCAACTTACTCTAAATATCTC
TAAATCCAACTATATGATCTTCAGTGAGCacaaacaaactaatttcaaCA
TTTCTATTTCAGGTCAGACTCTGAACCATGTCAATGAAGCTAAATACCTT
GGAGTAATCATTGATCATAAACTGAGCTGGAGAGAACACCTCAAGAGACT
GCACACAAGAATTAAGCAGAATATAGGTATTCTTCACAAAGTTGGCTGGT
TTCTTCCTAGAAAGAATATGATATCTCTTTTTTATGCCTTAGTGAACTCA
CATCTGACATACGGTATAACTTCATGGGATTCCCCTGTAACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010498-exon-sc0000106-1491911889:313692..314646 | TCONS_00010498-exon-sc0000106-1491911889:313692..314646 | Clytia hemisphaerica | exon |
| TCONS_00010498-exon-sc0000106-1510915933:313692..314646 | TCONS_00010498-exon-sc0000106-1510915933:313692..314646 | Clytia hemisphaerica | exon |
| TCONS_00010498-exon-sc0000106-1575043694:313692..314646 | TCONS_00010498-exon-sc0000106-1575043694:313692..314646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:313692..314646 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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