TCONS_00010519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010519
Unique NameTCONS_00010519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010519 ID=TCONS_00010519|Name=TCONS_00010519|organism=Clytia hemisphaerica|type=transcript|length=390bp
TAGATATTATGAAAATAGAAGTGTCGACAGATTTAATAATAACATGAAAG
TTTGATAATTTTACTTGGTATGGAAGGAATCTACAATTGTTCATCTTCAG
AAAAAGTTCTTAATCTGGAGAAAGAGCTTGAGAAGGAACTGAAGGATTTG
CAAAATGAAATCGAAGCTGGTGGAGTCATTGGGAAAACAGAACATCAAAG
TTTTAGCTCTGTCCCAATTCCTAATGATGCTAAATTCTTCAGAAAACAAC
GAAAGATTGCTGTTAAAAACTGTTTAAAGGTTCGAGAAGCTAAACCATTG
TTGTTGCAAAGCGAACTGATGAAAGAAGAGGTTGATTCTTGTCTGAAGAG
TGAATACACAAATGAATCAATCCCTGTACTGTTACATCAG
Run BLAST on NCBI

protein sequence of TCONS_00010519-protein

>TCONS_00010519-protein ID=TCONS_00010519-protein|Name=TCONS_00010519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MEGIYNCSSSEKVLNLEKELEKELKDLQNEIEAGGVIGKTEHQSFSSVPI
PNDAKFFRKQRKIAVKNCLKVREAKPLLLQSELMKEEVDSCLKSEYTNES
IPVLLHQ
Run BLAST on NCBI

transcript from alignment at sc0000107:275625..276554+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010519 ID=TCONS_00010519|Name=TCONS_00010519|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at sc0000107:275625..276554+ (Clytia hemisphaerica)
TAGATATTATGAAAATAGAAGTGTCGACAGATTTAATAATAACATGAAAG
TTTGATAATTTTACTTGGTATGGAAGGAATCTACAATTGTTCATCTTCAG
AAAAAGTTCTTAATCTGGAGAAAGAGCTTGAGAAGGAACTGAAGGATTTG
CAAAATGAAATCGAAGCTGGTGGAGTCATTGGGAAAACAGAACATCAAAG
TTTTAGGTATGTCTTTGcttaatataataataatatttaacCTTTCTCAG
TGTTCCaaatttattatcattattatcatATTACATTTCTTCATTAGGAC
GACTATACCTTTATGAATCTTGaactattttgttttttcttcaactttag
caaatgttgttttttttcatacaGCAAACAAAcctcaattattttcaaat
aaattgatttaaattCCTTTCTTTTTCAGCTCTGTCCCAATTCCTAATGA
TGCTAAATTCTTCAGAAAACAACGAAAGATTGCTGTTAAAAACTGTTTAA
AGGTTAATGTGCTTCATTCATTTGTGCTATGAAATAAAGTTTGGTTGAAA
TAATTAGATGAGTTTGCTTAAAAGGACATCATTTAATCCATCTTCAATta
cttacacagcatttttagacaaaagaaagaacaactttctctcaattttt
tagaaattcttttgtttagaaTATCTTTAAGGTTAGGAAATATTCAAGCC
TAATGGGaaagaaatagaatgaaaagttTGTGAGTGATATTCATGTTATA
CTATTCTTCCAGGAATAGGCTTGTATGATTTAAGAATACTAATCATGATA
TTTCATTAAAAATCAATAGGTTCGAGAAGCTAAACCATTGTTGTTGCAAA
GCGAACTGATGAAAGAAGAGGTTGATTCTTGTCTGAAGAGTGAATACACA
AATGAATCAATCCCTGTACTGTTACATCAG

Coding sequence (CDS) from alignment at sc0000107:275625..276554+

>TCONS_00010519 ID=TCONS_00010519|Name=TCONS_00010519|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000107:275625..276554+ (Clytia hemisphaerica)
ATGGAAGGAATCTACAATTGTTCATCTTCAGAAAAAGTTCTTAATCTGGA
GAAAGAGCTTGAGAAGGAACTGAAGGATTTGCAAAATGAAATCGAAGCTG
GTGGAGTCATTGGGAAAACAGAACATCAAAGTTTTAGCTCTGTCCCAATT
CCTAATGATGCTAAATTCTTCAGAAAACAACGAAAGATTGCTGTTAAAAA
CTGTTTAAAGGTTCGAGAAGCTAAACCATTGTTGTTGCAAAGCGAACTGA
TGAAAGAAGAGGTTGATTCTTGTCTGAAGAGTGAATACACAAATGAATCA
ATCCCTGTACTGTTACATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005901XLOC_005901Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010519-proteinTCONS_00010519-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010519-exon-sc0000107-1491911889:275625..275830TCONS_00010519-exon-sc0000107-1491911889:275625..275830Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1510915933:275625..275830TCONS_00010519-exon-sc0000107-1510915933:275625..275830Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1575043694:275625..275830TCONS_00010519-exon-sc0000107-1575043694:275625..275830Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1491911889:276054..276126TCONS_00010519-exon-sc0000107-1491911889:276054..276126Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1510915933:276054..276126TCONS_00010519-exon-sc0000107-1510915933:276054..276126Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1575043694:276054..276126TCONS_00010519-exon-sc0000107-1575043694:276054..276126Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1491911889:276444..276554TCONS_00010519-exon-sc0000107-1491911889:276444..276554Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1510915933:276444..276554TCONS_00010519-exon-sc0000107-1510915933:276444..276554Clytia hemisphaericaexon
TCONS_00010519-exon-sc0000107-1575043694:276444..276554TCONS_00010519-exon-sc0000107-1575043694:276444..276554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:275625..276554 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76409	1.72026	0.665796	0.651378	22.7324	19.2167	9.57605	8.72906	3.79899	6.54701	5.75894	6.91869	0.912519	0.13538	0.667804	0.358328	0.882862	1.05572	1.04181	0.654109	1.32659	0.831941	0.898963	1.63458	6.10296	6.0102	1.61261	1.72102	1.52289	0.886618
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029376DUF4549
Blast
[Close]
BLAST of TCONS_00010519 vs. Swiss-Prot (Human)
Match: CF183 (Putative uncharacterized protein C6orf183 OS=Homo sapiens GN=C6orf183 PE=5 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.532e-18
Identity = 45/107 (42.06%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:   70 MEGIYNCSSSXXXXXXXXXXXXXXXXXQNEIEAGGVIGKTEHQSFSSVPIPNDAKFFRKQRKIAVKNCLKVREAKPLLLQSELMKEEVDSCLKSEYTNESIPVLLHQ 390
            M+ IY  +S+E+V  LEK+L  +L +L++EIE  G +  T ++ +SS+ +P D  +FR++R++A+K  L+V E+KPL++Q++ ++ E++SCL+ EYT E++P+LL Q
Sbjct:    1 MDEIYKITSTERVQLLEKKLAVQLTELKSEIEEQGALQGTANRVYSSIQMPKDIYYFRRERELALKKTLQVAESKPLVVQADAVQRELESCLRREYTPENLPLLLLQ 107
The following BLAST results are available for this feature:
BLAST of TCONS_00010519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CF1831.532e-1842.06Putative uncharacterized protein C6orf183 OS=Homo ... [more]
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