TCONS_00010559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010559
Unique NameTCONS_00010559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010559 ID=TCONS_00010559|Name=TCONS_00010559|organism=Clytia hemisphaerica|type=transcript|length=1895bp
GTTTGAACAAACTGTTTGACTCGGTAAATCAACTACAGTATCAATCATGT
TACGTTTTATATTGGTCCTGGCAACAATCATCAGTGCAATTTATGCACAG
GGACAATGTGGAGTATCAAAAGTTCCACAAAGTCGAGTTGTGAATGGAGT
TGAAGCACCACAAGGAGCTTGGCCATGGATCGTCTCATTGCAAACACAAA
ATGGATTCGCGTACTGTGGGGGTACCATCCTTTCACCGACTTGGATTATG
ACTGCAAGCCATTGCATCGATGACAACCCAACAGCAATCGCCGTAGTAGC
GGGCGCACATAACATCAAAGCTATGGAATGGTCACAACAAAAACAATGGG
CTAAAAGATACATATTGCACCCAAACTACAGGAAGGGTAGTTTTGAGTCT
GATATTGCCTTGATCGAATTATGGAGACCTTTCGTATTCAACGATCGAGT
TAACAGACCATGTCTTCCAGGATTTAACGATTACCCACCTGTTGGCACAT
GGTGTTATATTGCTGGTTGGGGACGAACGCAATACGACCCAATAATCCGA
CCTGATAAATTACAACAAGCACGAATCCCCATCCGACAACGAAACGGACA
AGATGAACATATCTTGGTAGGATTTGGTGTCCGAGGAAGAGCCAGTTCAT
GCCAAGGTGATTCTGGAGGTCCACTGATGTGTAAGGCCGCTTCAGGTCAT
TGGATTGTAGAAGGGGCATCGAGTTGGGGATACAAAGGATGCCATAGTGT
CAGTGGTTACACACCATTAACCAAATATTTGAACTGGGTCAAGCAATATG
CtccaatataatttttaaattattttcttNTGTTATAATTTGTATTAATC
AAGCTGTCCAAACCTGGCAAAAGACTTCGAGTATAAATTGCGTGCGAATC
TTTCTGAAAATTTACAATCACTTTTGgattcattttttcattatgaTGTT
GAAATTGGTTCTAGCAGTTCTTGTTGTAGCACCTTATGTAGAAGGAAGAG
GTGGTATCTCTAAAGTTCAAGAAAAACGAATCGTTAATGGAGTTGAAGTA
AACCCAGAAGGTAAATGGCCGTGGATCGTGTCAATATCGATACAAAATCA
AGTTGCAAAAAGAAACTGTGGTGGTAGTATTTTGACAAGTACCTGGATTT
TGACAGCCGCTCATTGCTTCGATGCTCGTCCTCCAAATTTTCCTCATCCA
CCTGTAGCTACGGATATCACAGTAGTAGCCGGTGCACATAATATTCAACG
TCAAGAAAGATCACAACAAAGTAGAGGGGCTACAAGATATATCCTGCACC
CAAACTACAATCCTCATACTCTAACAGCTGACATTGCTTTGATCCAGTTA
TCGAGTCCATTAATTTTCAATCAGCGAGTTAAAAGAGCTCGTATTCAAGC
CAAAGACGTCTATCCGAAAATGAATAAGAATTGTTATGCTGCTGGCTGGG
GACTGACCAATGTGCATCCAAAGATCTCACCCGCAACATTGCAAGAGGCA
CGGCTCCCTATCATCCAGAAGAACGTCCATAATGAGCATATCTATGCAGG
ACATGAACAGCCGGCAAACACGTGGCCAAGCACATGCATGGGCGATTCTG
GTGGTCCATTGATGTGTGAGAGGTCTACTGACAAGGCATGGGTAGTAAAA
GGAGTATTATCTCATGGTGCAACAGATTGTACCGTTTACAGTGCATTTAC
ACCGGTAGCCACGTACTTGAACTGGATTAAAACATTCAACGTTGGGGATA
TTAAAACTTAGAATTTCTTACAtatgtttgatttgaaataaaatgagTCT
ACAGTAACAATGATAATTTtgttgtattaaaaaaaaaactttactcCACG
CCTTAttctatacacgttttttgtaagaacaaactatataagaaa
Run BLAST on NCBI

protein sequence of TCONS_00010559-protein

>TCONS_00010559-protein ID=TCONS_00010559-protein|Name=TCONS_00010559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MMLKLVLAVLVVAPYVEGRGGISKVQEKRIVNGVEVNPEGKWPWIVSISI
QNQVAKRNCGGSILTSTWILTAAHCFDARPPNFPHPPVATDITVVAGAHN
IQRQERSQQSRGATRYILHPNYNPHTLTADIALIQLSSPLIFNQRVKRAR
IQAKDVYPKMNKNCYAAGWGLTNVHPKISPATLQEARLPIIQKNVHNEHI
YAGHEQPANTWPSTCMGDSGGPLMCERSTDKAWVVKGVLSHGATDCTVYS
AFTPVATYLNWIKTFNVGDIKT
Run BLAST on NCBI

transcript from alignment at sc0000107:335778..343102-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010559 ID=TCONS_00010559|Name=TCONS_00010559|organism=Clytia hemisphaerica|type=transcript|length=7325bp|location=Sequence derived from alignment at sc0000107:335778..343102- (Clytia hemisphaerica)
GTTTGAACAAACTGTTTGACTCGGTAAATCAACTACAGTATCAATCATGT
TACGTTTTATATTGGTCCTGGCAACAATCATCAGTGCAATTTGTAAGTAA
ACCATTTACAAGAGACTCCCAAAAACGATGAAATTTTCCGAAATATTTAT
AGGAGGAATTTTAAATATTAATGATTTAAAAAACATTTTCCTCAGCTTCT
TAAATATTTTCCGACCAAATAATTTAATTTAAATATTTGAAGTATTTTTA
CAAAAAAAATTTTTTGTCTTATGCTCGTTATCAATTATTTTATAGAAACT
TCCCGACCCCACTATAATCACTGATTTTTGAAAAGCTTGTTATTTTCGTC
ATTTCTTTAGATGCACAGGGACAATGTGGAGTATCAAAAGTTCCACAAAG
TCGAGTTGTGAATGGAGTTGAAGCACCACAAGGAGCTTGGCCATGGATCG
TCTCATTGCAAACACAAAATGGATTCGCGTACTGTGGGGGTACCATCCTT
TCACCGACTTGGGTAAATTTAATTAAGGATTTGCCATGCAAATATAACTT
GTGCAACCATTATCTATAATAGGGTTGTGATTTCAATTCCTACAGTAGTC
TAAATCGACAATATCATGCAATATGACTCTCGATTTTAGAAAATCCATCC
CTAAGTTCGGTTAAAACTGCTCAAAGAGAGGAAAAAATTGTAGTTTCTTG
TCATTTTTTGGGCATGTTCTTAATTTTTCGACGAATTTCAGCCTCAATGT
TCTTATAAACTGGGTTCTAATAAAAAAAACGTGTACTTTTCTTTCTTTAC
GAAAAAAAAAGCCTGAATACAACCAAAAGAAAAGTATGTAAAAATCTAAA
TCCAAAAATGGATGCCTCTAATATTAAAAACATCTTTTTATAAGATTCTG
ACAACAAAACCCGGTATTTATATCAAAATCCACTGGTCTACAACAACGTC
TTTCCATAGATTATGACTGCAAGCCATTGCATCGATGACAACCCAACATN
AATCCACTGATCTACAACAACGTCTTTCCATAGATTATGACTGCAAGCCA
TTGCATCGATGACAACCCAACAGCAATCGCCGTAGTAGCGGGCGCACATA
ACATCAAAGCTATGGAATGGTCACAACAAAAACAATGGGCTAAAAGATAC
ATATTGCACCCAAACTACAGGAAGGGTAGTTTTGAGTCTGATATTGCCTT
GATCGAATTATGGAGACCTTTCGTATTCAACGATCGAGTTAACAGACCAT
GTCTTCCAGGATTTAACGATTACCCACCTGTTGGCACATGGTGTTATATT
GCTGGTGAGATATTATTTCTTTTGGAGACTCAAATTTTACCTCCCCTTTT
CACAGATCTGGTAAGATTTTTTAGCAAGTGGGGTAAAAATATCGGACCAA
AACTCAACGGCAATTGATATTCCCATGTNGTTATATTGCTGGTGAGATAT
TATTTCTTTTGGAGACTCAAATTTTACCTCCCCTTTTCACAGATCTGGTA
AGATTTTTTAGCAAGTGGGGTAAAAATATCGGACCAAAATCAACGGCAAT
TGATATTCCCATTTTTTTATGGCTGGGGATTTGAATTCCATTGTTTTCGA
GTCATAAAACTCAGTGGTTATGGGATAAATAACACAATATTTTACAGCAA
TGATTTGCTTATCTGATTATTTTTAGCGGGGACAAAAATTAGAGTATAAT
TTTCCACAGTATTTTGGCCAATTTTTTCAGTGGGAAGGGGTCACAGTGGG
TCTGTGAGAAGAGGGTGTAACTTTGTTGCATAGGGTTAGTACGTGTCAGT
TAGTCCGAGTTCACAAATAAACGTATATTTTTATTACTTCACTATTACAG
GTTCTATTACTTGACAGTTATTTTACAAACTTTGAAGAGTATAATTTTCC
CGGGTGTATTTTACCGAACTTTTTAATCATTTTCCTTTTCGTATTTTGTT
TTTCGTTTCTTAGGTCGGTTTGTAACTCACTTATTTCGAAATTCTTCTTT
GATTAAAATCACTAAGAGCACCCATTTGATTTCTGAGATTGGAATTCCCC
TATAGACCTAAATTTATCAGAATCGGGTTTGCTATTTTGGTTTAGTTACA
ACAGTTATTAGGGCCAAAGGAGAATATTGAAACTGTTGGAGAAACTTGTA
TGTATTAAAAACTTATTTTGAAGGGGGGGGGGTAGGCTCGATAGCCGAGA
GTCTAACTGAGCTCACACGCATCAAAAGAAGATGAGAAACATATTTTTAT
TGATTGATATTACCATTTTTTTACTCTGAAAGGTTGGGGACGAACGCAAT
ACGACCCAATAATCCGACCTGATAAATTACAACAAGCACGAATCCCCATC
CGACAACGAAACGGACAAGATGAACATATCTTGGTAGGATTTGGTGTCCG
AGGAAGAGCCAGTTCATGCCAAGGTGATTCTGGAGGTCCACTGATGTGTA
AGGCCGCTTCAGGTCATTGGATTGTAGAAGGGGCATCGAGTTGGGGATAC
AAAGGATGCCATAGTGTCAGTGGTTACACACCATTAACCAAATATTTGAA
CTGGGTCAAGCAATATGCTCCAATATAATTTTTAAATTATTTTCTTNTGT
TATAATTTGTATTAATCAAGCTGTCCAAACCTGGCAAAAGACTTCGAGTA
TAAATTGCGTGCGAATCTTTCTGAAAATTTACAATCACTTTTGGATTCAT
TTTTTCATTATGATGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAGCACC
TTGTAAGTATTTTGATACCTAGCTTCGAATTTCAAAATAACTACCTTGGC
TTTTTGCTTTTACTTTTTACCCTTTAACTGTCATGCGCTCGACCTATTTG
CCAAATGTCGGCNAAAGAATCTATGAATACTTAAACTTAATTTCGTCATA
ATCATTTTTTTGGTATCTTGGTTCGCATCAATTTTGATAGTATTTTCACC
CGATCCTTCATCCACCTTTTTTATCTAAGAAACTTCATATTTTTGATCTT
AGAAACTTCATATTTTTGCCTCTCAAAACTTACTGAAGGTGTTATGATAG
TTCAAAGCACACCTTGGATTTTACCGAGATTTCAGTAACCCTGTCAATTT
TTTCGGTAGATATTTGAGGCACCATTTTGCAGACCCCCTCTGGAATTTTG
CCTGCTTTCAAAAGACTACCTGTATTTTGTGTGAATTTTAATAACCCCCT
GAATTTTCCGAGATTATATTGCTGCCAAAGACAAATTGTAGACATTAAAT
CTTTTTTCGAAATTAAATTAAAGGGGAATCCCAAGATGCTCGTTAAAAAC
CTAGTTTATTTCTCTTCTTAAAAGTCCATAATATTTATCCAGCATTCTAT
TGGTCCGAGCAAACATTATTATCCCACCAAATAGGTATTTGAACAGGCGT
TTATACTGTTCATTTATTTGCAGGAAAATATTCCAGACGTTGAACAAATA
TTTAGCCATGGGAAAGGTTTATTTCTCTTCTTAAAAGTCCATAATATTTA
TCCAGCATTCAATTGGTCGAAACATTATTATTCCACCAAATAGGCATTTA
AACAGGCGTTTATACTGTTCATTTATTTACAGGAAAATATTCTAGACTTT
GTTATTTTACAGGTCTGTGATTAATATATTTTCGAAGACGCTGAACAAAT
GTTTAGCCATGGCAAAGGTCTGGGATATAATGGAGTGGTATTTTTGGAAC
TTTTTAACTTAATGTCCCGTCAAATTGTTATAATTTGTATTAATCAAGCT
GTCCAAACCTGGCAAAAGACTTCGAGTATAAATTGCGTGCGAATCTTTCT
GAAAATTTACAATCACTTTTGGATTCATTTTTTCATTATGATGTTGAAAT
TGGTTCTAGCAGTTCTTGTTGTAGCACCTTGTAAGTATTTTGATACCTAG
CTTCGAATTTCAAAATAACTACCTTGGCTTTTTGCTTTTACTTTTTACCC
TTTAACTGTCATGCGCTCGACCTATTTGCCAAATGTCGGCATATGCCGAC
ATGAGCGAACACAAAGTTTACCATCACATTTACTCTTATTTTCTGAAAAA
TATCAGAAATATGAGTGATATGTGTTTGCTTTGAGTTGAAAAAGATATAA
TGATTTTCAATTTTCATATATTATGAAAAACATTTTTTAAATATAATTTA
ATTACTAAACTTTCTCAAAATCGAACTTTTAATAAATTTCAAAAAAAACA
CTACAAAGAATGGAAAGTGCTCATGTCGGCAAATGCCGTCATCGGCAAAG
AAATCAAAAGCGCCCTCCATGTCAACATTCTTTTCTTTTCTTTTCTTTTT
TTTAAAAATGATATAATATTCACTAAAATAATGCGGTAGACTTTCATTTC
TTATCGATGGTCTCAAATTATTTGAGACAGACAGAGCTCGAGTTTAACAT
AAGTTTTTCAAATGTTACACGCATTATATTATTGCCGGCATTAAATATCA
CACATATAGAATAAGCAATGATCANAATATTCCAGACGTTGAACAAATAT
TTAGCCATGGGAAAGGTTTATTTCTCTTCTTAAAAGTCCATAATATTTAT
CCAGCATTCAATTGGTCGAAACATTATTATTCCACCAAATAGGCATTTAA
ACAGGCGTTTATACTGTTCATTTATTTACAGGAAAATATTCTAGACTTTG
TTATTTTACAGGTCTGTGATTAATATATTTTCGAAGACGCTGAACAAATG
TTTAGCCATGGCAAAGGTCTGGGATATAATGGAGTGGTATTTTTGGAACT
TTTTAACTTAATGTCCCGTCAAATTGTTATAATTTGTATTAATCAAGCTG
TCCAAACCTGGCAAAAGACTTCGAGTATAAATTGCGTGCGAATCTTTCTG
AAAATTTACAATCACTTTTGGATTCATTTTTTCATTATGATGTTGAAATT
GGTTCTAGCAGTTCTTGTTGTAGCACCTTGTAAGTATTTTGATACCTAGC
TTCGAATTTCAAAATAACTACCTTGGCTTTTTGCTTTTACTTTTTACCCT
TTAACTGTCATGCGCTCGACCTATTTGCCAAATGTATATGCCGACATGAG
CGAACACAAAGTTTACCATCACATTTACTCTTATTTTCTGAAAAATATCA
GAAATATGAGTGATATGTGTTTGCTTTGAGTTGAAAAAGATATAATGATT
TTCAATTTTCATATATTATGAAAAACATTTTTTAAATACAATTTAATTAC
TAAACTTTCTCAAAATCGAACTTTTAATAAATTTCAAAAAAAAACACTAC
AAAGAATGGAAAGTGCTCATGTCGGCAAATGCCGTCATCGGCAAAGAAAT
CAAAAGCGCCCTCCATGTCAACATTCTTTTCTTTTCTTTTCTTTTTTTTA
AAAATGATATAATATTCACTAAAACAATGAGGTAGACTTTCATTTCTTAT
CGATGGTCTCAAATTATTTGAGACAGACAGAGCTCGAGTTTAACATAAGT
TTTTCAAATGTTACACGCATTATATTATTGACGGCATTAAATATCACACA
TATAGAATAAGCAATGATCCTTCTTTACGCATACAGATACATACTATTGG
ACCTAATTTAGACGTTTTAATTTTTAGATGTAGAAGGAAGAGGTGGTATC
TCTAAAGTTCAAGAAAAACGAATCGTTAATGGAGTTGAAGTAAACCCAGA
AGGTAAATGGCCGTGGATCGTGTCAATATCGATACAAAATCAAGTTGCAA
AAAGAAACTGTGGTGGTAGTATTTTGACAAGTACCTGGGTACGTTTAGGA
ATAGTAATTCTGGGATTTAGCTCAGTAACTTGATAATATAAAACCGATTT
TTGAATAATACAACGTATGTTTTCAATTGAAAAACATAAAACTAGCGAAA
GGACTCAAATTCAAAAAAAACTTACTCGAGAATATTCAGGGTGGTGTAGC
TTGGAAATGACTGGAAAAAAATTATTGCAAATTGACGAAAGTCAGGACCG
TTAGCAATAGGTGGTCCACCTAAACATATTCTAAAATCTTGATGATCACG
TGATCAACTTTCAACTGACCCATATTAAAAATCCTTTTCATAGATTTTGA
CAGCCGCTCATTGCTTCGATGCTCGTCCTCCAAATTTTCCTCATCCACCT
GTAGCTACGGATATCACAGTAGTAGCCGGTGCACATAATATTCAACGTCA
AGAAAGATCACAACAAAGTAGAGGGGCTACAAGATATATCCTGCACCCAA
ACTACAATCCTCATACTCTAACAGCTGACATTGCTTTGATCCAGTTATCG
AGTCCATTAATTTTCAATCAGCGAGTTAAAAGAGCTCGTATTCAAGCCAA
AGACGTCTATCCGAAAATGAATAAGAATTGTTATGCTGCTGGTGAGTAAG
ACTTGTCTCCAAAGTTCAAATGAAAACTGGAGAATAAATAAATATTTCAC
TATCGACCTCCCCCTGTAGGCCGAGAAAAGTTTATTTTAACTTCCTAGAA
AAAAGTCTTCTATGGTTACCTTTAAAAAAATCAATTACTGTGCTTTTCAC
AGAATTTCATCGAGTGTAATCAATTGGAAGACCAGTGTGTGATTCAGGGA
AGTGAATGTACCTTCGCCCGGGTCAATCCATATCATGTGAGTGCAGTTGG
GTACAACTACTCTCTGAAACAAGGGTAGATAATCGTGCCACGACACTTGT
CGCTATATGTTCGGTCACGCTATTAATACCTTTCTTACTATGGTATACGT
CATGACAGAGCAATGATTCTGCAGAGCAATGATTCTGCAGAGCAATGATT
CTGCAGCGCAATGATTCTTATTCTCGCGTGATTAAGACCCATTTCGAGAT
ATCACGGGGCGTATAACCATCCATCTTTCGAATTAACCAGAAGTAAAAAT
AAGTTTGATCATATTTTGTGACAGGCTGGGGACTGACCAATGTGCATCCA
AAGATCTCACCCGCAACATTGCAAGAGGCACGGCTCCCTATCATCCAGAA
GAACGTCCATAATGAGCATATCTATGCAGGACATGAACAGCCGGCAAACA
CGTGGCCAAGCACATGCATGGGCGATTCTGGTGGTCCATTGATGTGTGAG
AGGTCTACTGACAAGGCATGGGTAGTAAAAGGAGTATTATCTCATGGTGC
AACAGATTGTACCGTTTACAGTGCATTTACACCGGTAGCCACGTACTTGA
ACTGGATTAAAACATTCAACGTTGGGGATATTAAAACTTAGAATTTCTTA
CATATGTTTGATTTGAAATAAAATGAGTCTACAGTAACAATGATAATTTT
GTTGTATTAAAAAAAAAACTTTACTCCACGCCTTATTCTATACACGTTTT
TTGTAAGAACAAACTATATAAGAAA

Coding sequence (CDS) from alignment at sc0000107:335778..343102-

>TCONS_00010559 ID=TCONS_00010559|Name=TCONS_00010559|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0000107:335778..343102- (Clytia hemisphaerica)
ATGATGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAGCACCTTATGTAGA
AGGAAGAGGTGGTATCTCTAAAGTTCAAGAAAAACGAATCGTTAATGGAG
TTGAAGTAAACCCAGAAGGTAAATGGCCGTGGATCGTGTCAATATCGATA
CAAAATCAAGTTGCAAAAAGAAACTGTGGTGGTAGTATTTTGACAAGTAC
CTGGATTTTGACAGCCGCTCATTGCTTCGATGCTCGTCCTCCAAATTTTC
CTCATCCACCTGTAGCTACGGATATCACAGTAGTAGCCGGTGCACATAAT
ATTCAACGTCAAGAAAGATCACAACAAAGTAGAGGGGCTACAAGATATAT
CCTGCACCCAAACTACAATCCTCATACTCTAACAGCTGACATTGCTTTGA
TCCAGTTATCGAGTCCATTAATTTTCAATCAGCGAGTTAAAAGAGCTCGT
ATTCAAGCCAAAGACGTCTATCCGAAAATGAATAAGAATTGTTATGCTGC
TGGCTGGGGACTGACCAATGTGCATCCAAAGATCTCACCCGCAACATTGC
AAGAGGCACGGCTCCCTATCATCCAGAAGAACGTCCATAATGAGCATATC
TATGCAGGACATGAACAGCCGGCAAACACGTGGCCAAGCACATGCATGGG
CGATTCTGGTGGTCCATTGATGTGTGAGAGGTCTACTGACAAGGCATGGG
TAGTAAAAGGAGTATTATCTCATGGTGCAACAGATTGTACCGTTTACAGT
GCATTTACACCGGTAGCCACGTACTTGAACTGGATTAAAACATTCAACGT
TGGGGATATTAAAACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005916XLOC_005916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010559-exon-sc0000107-1575043694:343011..343102TCONS_00010559-exon-sc0000107-1575043694:343011..343102Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:342591..342742TCONS_00010559-exon-sc0000107-1575043694:342591..342742Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:342106..342143TCONS_00010559-exon-sc0000107-1575043694:342106..342143Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:341799..342031TCONS_00010559-exon-sc0000107-1575043694:341799..342031Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:340351..340820TCONS_00010559-exon-sc0000107-1575043694:340351..340820Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:337365..337525TCONS_00010559-exon-sc0000107-1575043694:337365..337525Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:336762..337059TCONS_00010559-exon-sc0000107-1575043694:336762..337059Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1575043694:335778..336228TCONS_00010559-exon-sc0000107-1575043694:335778..336228Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:343011..343102TCONS_00010559-exon-sc0000107-1510915933:343011..343102Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:342591..342742TCONS_00010559-exon-sc0000107-1510915933:342591..342742Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:342106..342143TCONS_00010559-exon-sc0000107-1510915933:342106..342143Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:341799..342031TCONS_00010559-exon-sc0000107-1510915933:341799..342031Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:340351..340820TCONS_00010559-exon-sc0000107-1510915933:340351..340820Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:337365..337525TCONS_00010559-exon-sc0000107-1510915933:337365..337525Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:336762..337059TCONS_00010559-exon-sc0000107-1510915933:336762..337059Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1510915933:335778..336228TCONS_00010559-exon-sc0000107-1510915933:335778..336228Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:343011..343102TCONS_00010559-exon-sc0000107-1491911889:343011..343102Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:342591..342742TCONS_00010559-exon-sc0000107-1491911889:342591..342742Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:342106..342143TCONS_00010559-exon-sc0000107-1491911889:342106..342143Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:341799..342031TCONS_00010559-exon-sc0000107-1491911889:341799..342031Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:340351..340820TCONS_00010559-exon-sc0000107-1491911889:340351..340820Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:337365..337525TCONS_00010559-exon-sc0000107-1491911889:337365..337525Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:336762..337059TCONS_00010559-exon-sc0000107-1491911889:336762..337059Clytia hemisphaericaexon
TCONS_00010559-exon-sc0000107-1491911889:335778..336228TCONS_00010559-exon-sc0000107-1491911889:335778..336228Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010559-proteinTCONS_00010559-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:335778..343102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149275	0.0970446	0.00237644	0	0.067102	0.144457	0.554951	0.468112	0.125411	0.361506	0.0498903	0	3.25993	5.09112	47.0517	106.904	2.03307	2.77234	34.923	18.9485	0.557628	0.609912	3.14852	2.35128	10.3591	10.3681	0.396042	0.354042	5.97742	5.48301
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00010559 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.240e-42
Identity = 93/257 (36.19%), Postives = 138/257 (53.70%), Query Frame = 2 
Query:   68 LATIISAIYAQGQCGVSKV-----PQSRVVNGVEAPQGAWPWIVSLQTQNGFAYCGGTILSPTWIMTASHCIDDNPTAIAVVAGAHNIKAMEWSQQKQWAKRYILHPNYRKGSFESDIALIELWRPFVFNDRVNRPCLPGFNDYPPVGTWCYIAGWGRTQYDPIIRPDKLQQARIPIRQR-------NGQDEHILVGFGVRGRASSCQGDSGGPLMCKAASGHWIVEGASSWGYKGCHSVSG--YTPLTKYLNWVKQ 796
            L +  S + A   CGV  +       SR+VNG +A  G+WPW VSLQ + GF +CGG+++S  W++TA+HC     T+  VVAG  +  + E + Q     +   +P +   +  +DI L++L  P  F+  V+  CLP  +D  P GT C   GWG+T+Y+    PDKLQQA +P+            +   +++  G  G  SSC GDSGGPL+C+   G W + G  SWG   C + S   Y  +TK + WV++
Sbjct:    6 LLSCFSLVGAAFGCGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-VSSCMGDSGGPLVCQ-KDGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQK 258

HSP 2 Score: 119.783 bits (299), Expect = 6.638e-30
Identity = 76/246 (30.89%), Postives = 121/246 (49.19%), Query Frame = 1 
Query: 1027 RIVNGVEVNPEGKWPWIVSISIQNQVAKRNCGGSILTSTWILTAAHCFDARPPNFPHPPVATDITVVAGAHNIQRQERSQQSRGATRYILHPNYNPHTLTADIALIQLSSPLIFNQRVKRARIQAKDVYPKMNKNCYAAGWGLTNVHPKISPATLQEARLPIIQ---------KNVHNEHIYAGHEQPANTWPSTCMGDSGGPLMCERSTDKAWVVKGVLSHGATDCTVYS--AFTPVATYLNWIK 1731
            RIVNG +  P G WPW   +S+Q++     CGGS+++  W++TAAHC            V T   VVAG  +    E + Q     +   +P ++  T+  DI L++L++P  F+Q V    + + D        C   GWG T  +   +P  LQ+A LP++          + + +  I AG         S+CMGDSGGPL+C++  D AW + G++S G+  C+  S   +  V   + W++
Sbjct:   33 RIVNGEDAVP-GSWPW--QVSLQDKTGFHFCGGSLISEDWVVTAAHC-----------GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-----VSSCMGDSGGPLVCQK--DGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQ 257
The following BLAST results are available for this feature:
BLAST of TCONS_00010559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB14.240e-4236.19Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 S... [more]
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