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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010565 ID=TCONS_00010565|Name=TCONS_00010565|organism=Clytia hemisphaerica|type=transcript|length=3193bpRun BLAST on NCBI protein sequence of TCONS_00010565-protein >TCONS_00010565-protein ID=TCONS_00010565-protein|Name=TCONS_00010565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp FTAVENPNDMIETDFQKTDQSPLLNIQRITQPSNHTGRLPKHLKPLLYDIRun BLAST on NCBI transcript from alignment at sc0000107:406533..426719- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010565 ID=TCONS_00010565|Name=TCONS_00010565|organism=Clytia hemisphaerica|type=transcript|length=20187bp|location=Sequence derived from alignment at sc0000107:406533..426719- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000107:406533..426719- >TCONS_00010565 ID=TCONS_00010565|Name=TCONS_00010565|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000107:406533..426719- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010565 vs. Swiss-Prot (Human)
Match: TRHDE (Thyrotropin-releasing hormone-degrading ectoenzyme OS=Homo sapiens GN=TRHDE PE=2 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 5.896e-89 Identity = 239/886 (26.98%), Postives = 405/886 (45.71%), Query Frame = 3
Query: 114 RLPKHLKPLLYDISLDLSQDEPFFTGISSIKFVCLNETNQIMFHGGNFSLVKLDIRNETQNGTLLSYKDISYMENTQMFIVQLNDNLKKNSTYYLHVVYKAEYSTNLAGIQKNIYFDEGVQKEMISIYSKPTYARTVFPCFDEPSFKARFRLHITHQANTTAVSNTPIERSYVLQSDWSKRTTVFTLTPYLCTYLVSFSINNHAFKETTTNNGLKIRLFSKQEEQKKIVK--SLKTVVKTLDFLESAFNVSLGLTKLDIVADPNYKMTPMSSYGLLVFRSALLVFDERCTTVEYERTGTIEIAQRIAQLWFGNMVTFDWWNDVWLSESFSNYFGIFAIDSL-DDQTFAREGELTKGRLSSMDYDDRRSAHPLIVHEDDIQNTFQIDDLFDLITFNKGVAVVEMMSNFIGQKEFLNGITSFLEENAYNENGVTTKDLWKAFEQVNQIKQGGNVSLGIGSLMYSFTHKPNYPIVTL---KRVNNSMFKLTQESIIDVELSNKNQSVTNET-LWNIPFTYITDQNKTLT---LVWLSKKETILNFPY--NVTWLKSNVGMVGYYVTNYDDVTWNALIDQLKQNKEVLDAADRATLLNDAFTLANKRSIDPLIALRLSEFIKYEMGYLPIKMFQSKYQSLMDLFDPILMEKYLKFTWKIQSHLVIPEFI-------NDRSNQSEVPHKTRTQRMETFKIALKQNVSGEMYERVKNVFENIYTNQSGIGLSPENRLLALYYGFEAENVDHYNFLWRLFRTSPIDTDRRILMKAFPRFKQLVNSTLANAFNTSIVSVQDTGSTLAQLTAAGSLTS---VWQYIKTHFTFFEKRYSNSHDL-SKLLIFIMGRFNTEEMLNEAQKFLDLHPLGGVHGTWTEKYIIETIQHNVYY 2702
RL HLKPL Y++ L + F+G +++ C N T ++ H ++ K+ + + G + Y + TQ+ +V LN L Y L ++Y A L G ++ Y G ++ + PT+AR FPCFDEP +KA F++ I HQA ++SN P+E S + W T F+ TP + TY ++++I N ++ETTT +G+ +RL+++ + ++ +L + ++F E F V L KLD++A P + M ++GL +F ++ D +++ Y T+ I I WFG++VT WW DVWL E F++YF D L ++ LT M D S+HP V ++ +Q T ID +FD I + KG A++ M++NF+G F G+ +L + Y DLW + +K+ G + I +M +T + YP++T+ N + Q I D+ K + N + LW IP T + ++ ++W+S K Y +WL N+ GY+ NYD W LIDQL +N EVL ++RA L++DAF+LA + I L + ++ E +LP L L D ME Y F I V +I N + + ++ R E +A + + + I +N++ I L+ R + G + D + F+W F ++ ++++IL++A + + V D + + A + W++ + + RY + + SKL+ + NTE L E + F+ + GV + +ET++ NV +
Sbjct: 140 RLSGHLKPLHYNLMLTAFMENFTFSGEVNVEIACRNATRYVVLHASRVAVEKVQLAEDRAFGAVPVAGFFLYPQ-TQVLVVVLNRTLDAQRNYNLKIIYNALIENELLGFFRSSYVLHGERRFLGVTQFSPTHARKAFPCFDEPIYKATFKISIKHQATYLSLSNMPVETSVFEEDGWV--TDHFSQTPLMSTYYLAWAICNFTYRETTTKSGVVVRLYARPDAIRRGSGDYALHITKRLIEFYEDYFKVPYSLPKLDLLAVPKHPYAAMENWGLSIFVEQRILLDPSVSSISYLLDVTMVIVHEICHQWFGDLVTPVWWEDVWLKEGFAHYFEFVGTDYLYPGWNMEKQRFLTDVLHEVMLLDGLASSHP--VSQEVLQAT-DIDRVFDWIAYKKGAALIRMLANFMGHSVFQRGLQDYLTIHKYGN--AARNDLWNTLSEA--LKRNGKY-VNIQEVMDQWTLQMGYPVITILGNTTAENRIIITQQHFIYDISAKTKALKLQNNSYLWQIPLTIVVGNRSHVSSEAIIWVSNKSEHHRITYLDKGSWLLGNINQTGYFRVNYDLRNWRLLIDQLIRNHEVLSVSNRAGLIDDAFSLARAGYLPQNIPLEIIRYLSEEKDFLPWHAASRALYPLDKLLDR--MENYNIFNEYILKQ-VATTYIKLGWPKNNFNGSLVQASYQHEELRREVIMLACSFGNKHCHQQASTLISDWISSNRNRIPLNV--RDIVYCTGVSLLDEDVWEFIWMKFHSTTAVSEKKILLEALTCSDDRNLLNRLLNLSLNSEVVLDQDAIDVIIHVARNPHGRDLAWKFFRDKWKILNTRYGEALFMNSKLISGVTEFLNTEGELKELKNFMKNY--DGVAAA-SFSRAVETVEANVRW 1006 The following BLAST results are available for this feature:
BLAST of TCONS_00010565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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