TCONS_00010592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010592
Unique NameTCONS_00010592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010592 ID=TCONS_00010592|Name=TCONS_00010592|organism=Clytia hemisphaerica|type=transcript|length=309bp
aaattttcaataagagTGGTGTAAATTTACCAAATTATCCAGAAATCAAA
GGCTATTGCAACAATCTTGATGTTGGTGAAATTTTAGAATTGCACGGAGA
TGATGATAATTGTAGTTGTATGGGTTATGGTTGTACGGTAAGATGCACTT
tagaaatgattttcaaaactgATTATTTTTATCGAAGGCTTTGGTTTTTG
TCTCATGAGCAACAACAAAAACTATTTAAATTCTTGACAGAGAAAGATCC
TGAACTTTATTCGAATTTCGATGAATCGAAAAAAACTCTGATAATTAGAG
ACACAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00010592-protein

>TCONS_00010592-protein ID=TCONS_00010592-protein|Name=TCONS_00010592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
IFNKSGVNLPNYPEIKGYCNNLDVGEILELHGDDDNCSCMGYGCTVRCTL
EMIFKTDYFYRRLWFLSHEQQQKLFKFLTEKDPELYSNFDESKKTLIIRD
TG
Run BLAST on NCBI

transcript from alignment at sc0000107:18279..18587

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010592 ID=TCONS_00010592|Name=TCONS_00010592|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at sc0000107:18279..18587 (Clytia hemisphaerica)
CTCCTGTGTCTCTAATTATCAGAGTTTTTTTCGATTCATCGAAATTCGAA
TAAAGTTCAGGATCTTTCTCTGTCAAGAATTTAAATAGTTTTTGTTGTTG
CTCATGAGACAAAAACCAAAGCCTTCGATAAAAATAATcagttttgaaaa
tcatttctaAAGTGCATCTTACCGTACAACCATAACCCATACAACTACAA
TTATCATCATCTCCGTGCAATTCTAAAATTTCACCAACATCAAGATTGTT
GCAATAGCCTTTGATTTCTGGATAATTTGGTAAATTTACACCActcttat
tgaaaattt

Coding sequence (CDS) from alignment at sc0000107:18279..18587

>TCONS_00010592 ID=TCONS_00010592|Name=TCONS_00010592|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000107:18279..18587 (Clytia hemisphaerica)
TCCTGTGTCTCTAATTATCAGAGTTTTTTTCGATTCATCGAAATTCGAAT
AAAGTTCAGGATCTTTCTCTGTCAAGAATTTAAATAGTTTTTGTTGTTGC
TCATGAGACAAAAACCAAAGCCTTCGATAAAAATAATcagttttgaaaat
catttctaAAGTGCATCTTACCGTACAACCATAACCCATACAACTACAAT
TATCATCATCTCCGTGCAATTCTAAAATTTCACCAACATCAAGATTGTTG
CAATAGCCTTTGATTTCTGGATAATTTGGTAAATTTACACCActcttatt
gaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005927XLOC_005927Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010592-proteinTCONS_00010592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010592-exon-sc0000107-1491911889:18279..18587TCONS_00010592-exon-sc0000107-1491911889:18279..18587Clytia hemisphaericaexon
TCONS_00010592-exon-sc0000107-1510915933:18279..18587TCONS_00010592-exon-sc0000107-1510915933:18279..18587Clytia hemisphaericaexon
TCONS_00010592-exon-sc0000107-1575043694:18279..18587TCONS_00010592-exon-sc0000107-1575043694:18279..18587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:18279..18587 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354604	1.25062	0.401501	0	5.99867	3.21807	2.47451	1.70723	0.597636	2.38979	1.07778	0.236164	0.943344	0.244918	0.474882	0.432171	0.2662	0	0	0	0.342851	0	0	0.369642	0.380723	0.819206	1.4587	1.03784	0.787166	0.400999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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