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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010652 ID=TCONS_00010652|Name=TCONS_00010652|organism=Clytia hemisphaerica|type=transcript|length=4750bpRun BLAST on NCBI protein sequence of TCONS_00010652-protein >TCONS_00010652-protein ID=TCONS_00010652-protein|Name=TCONS_00010652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1248bp MENVRLVICLLMVTLALTLAEIETSKNAFRVYRQIQRTTQKNHIKLRFKTRun BLAST on NCBI transcript from alignment at sc0000108:472417..512094- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010652 ID=TCONS_00010652|Name=TCONS_00010652|organism=Clytia hemisphaerica|type=transcript|length=39678bp|location=Sequence derived from alignment at sc0000108:472417..512094- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000108:472417..512094- >TCONS_00010652 ID=TCONS_00010652|Name=TCONS_00010652|organism=Clytia hemisphaerica|type=CDS|length=3747bp|location=Sequence derived from alignment at sc0000108:472417..512094- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010652 vs. Swiss-Prot (Human)
Match: CNTP2 (Contactin-associated protein-like 2 OS=Homo sapiens GN=CNTNAP2 PE=1 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.229e-77 Identity = 249/895 (27.82%), Postives = 405/895 (45.25%), Query Frame = 2
Query: 251 LRFKTIHSTGLIMFAQGANKRDYLSLELFRGKIRVSGNFANGTANALRPITGQFDMFAGKDLADNMWHTVEYIRNIRQNIIYVDRGTSNEKFIFRKSPETYDELSVSL-VTFGGYYSFSTSDLSTAQSYSRKGISACFSEVTFSQEWFPLQERSYKPEPKTINFLEXXXXXXXXXXXXNKLPPERMTDIGDIKTVLECTDTDPSYRPLFFKSAVVNIGLIQNYTIPKLKMDLKFRTVVNDQTLANFTHLRTG---ETIELRVNRKGQVVLQFDQDTRVKVIETAREDYHDNQWHEASF---------DIDNEESAEKSYTAKFTVDGKTRYTKLNKRIPFDGYIN---------IGFGFTGCMRDIKINDEEIQRVRRSLTDTSATPKFFNISDVGVAYNVCSIRDFCNPNPCQNGGKCNQTDDNFVCNCDGTLYEGSTCHRPRFNYTCAGVRKSGERRSDVYYIDFDGLGPMEPVQALCDLGKTVETTVTQINNTKIKDKNVLTDTGKNDV-DVEYLASITQMRELIKNSATCSQFIKLQCKGVPIFLSPTGPPAANWIGGDDVVHYYWGGAKGQRGYCACGVRGDCKVGGRPTGQYCNCDSFQSKYQIVDEGNFTIKDHLPVRRVHFDKVLEGGGSEAMLRVGHLRCAGFGSRLNAATFRKPWSFVGMDHPDQPFDNIFAGSISFDFKTSIAYN-YMTMMHAHGPFSGDYCKVMIWSRTMVRVLLNFGFGQIKQDVDISSTGRTLDDNDWHEFELMFNLKELNVTLDGI-RMIQGLPLQDDPVQFNVDDKAVFVGGSYHDKNGFIGCIRSFYANGRIHDIRGAAEGLESSGVYPGCGSACVLLNRPC-NYGKCEDQYNDFKCNCTVSPFTGKYCQNTTRGKQFNSGNSLEYTF 2857
L FKT S G+I+ +G + DY++LEL + K+ +S N +N L PI G + G L D+ WH+V R R + +DR + FR + E +D L + +TFGG FS S SRK C + ++ R K EP +++G++ C + P P+FF +A + + + +FRT N L F+H I+L ++ G V + Q ++ ++ +D QWHE F ID +E++ + V +Y F G++N + F GCM+ I+++D+ + + P F V+ ++C+I D C PN C++GGKC+QT D+F C CD T Y G+TCH + +C + G+ S+ Y+ID DG GP+ P++ C++ + T+ ++ +++ V + K V + Y AS+ Q+ + ++ C Q++ CK + +P G P W+G + HYYWGG+ CACG+ +C YCNCD+ +++ D G + KDHLPV +V + GSEA L VG LRC G + NAA+F P S++ F + ISF FKT + ++ M D+ K+ + S T V + G G ++ + + L+D+ WH N+K+ ++ +D + + I+ P + + + + +FVGG+ + GF+GCIRS NG D+ A+ +SG GC C C N GKC ++Y+ + C+C+ + + G +C N G F G L Y F
Sbjct: 214 LNFKTSESEGVILHGEG-QQGDYITLELKKAKLVLSLNLG---SNQLGPIYGHTSVMTGSLLDDHHWHSVVIERQGRSINLTLDRSMQH----FRTNGE-FDYLDLDYEITFGGI-PFS----GKPSSSSRKNFKGCMESINYNGVNITDLARRKKLEP---------------------------SNVGNLS--FSCVE--PYTVPVFF-NATSYLEVPGRLNQDLFSVSFQFRTW-NPNGLLVFSHFADNLGNVEIDLTESKVG-VHINITQTKMSQIDISSGSGLNDGQWHEVRFLAKENFAILTIDGDEASAVRTNSPLQVKTGEKYF-------FGGFLNQMNNSSHSVLQPSFQGCMQLIQVDDQLVNLYEVA----QRKPGSF----ANVSIDMCAIIDRCVPNHCEHGGKCSQTWDSFKCTCDETGYSGATCHNSIYEPSCEAYKHLGQ-TSNYYWIDPDGSGPLGPLKVYCNMTEDKVWTIVS-HDLQMQTPVVGYNPEKYSVTQLVYSASMDQISAITDSAEYCEQYVSYFCKMSRLLNTPDGSPYTWWVGKANEKHYYWGGSGPGIQKCACGIERNCT----DPKYYCNCDADYKQWR-KDAGFLSYKDHLPVSQVVVGDT-DRQGSEAKLSVGPLRCQGDRNYWNAASFPNPSSYLHFS----TFQGETSADISFYFKTLTPWGVFLENMGKE-----DFIKLELKSATEVSFSFDVGNGPVEI---VVRSPTPLNDDQWHRVTAERNVKQASLQVDRLPQQIRKAPTEGH-TRLELYSQ-LFVGGA-GGQQGFLGCIRSLRMNGVTLDLEERAK--VTSGFISGCSGHCTSYGTNCENGGKCLERYHGYSCDCSNTAYDGTFC-NKDVGAFFEEGMWLRYNF 1019 The following BLAST results are available for this feature:
BLAST of TCONS_00010652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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