TCONS_00010780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010780
Unique NameTCONS_00010780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010780 ID=TCONS_00010780|Name=TCONS_00010780|organism=Clytia hemisphaerica|type=transcript|length=1015bp
AAACATTGTATCGCGGCGTTCGACAAAATATAAATAGTTTCTTAGCCCAA
TATGCATTTTTTTCGGGATAATAAACTTGCATGCATATGGGAAGCTAATT
CTATCCCCGCGGGGCGTTATTCGGTTCTGAAATTCGAATTTTCGAAACGT
GCCGGAGCCACATTCTTgaggtcagaaaaaaaaatcatttagtTTTCAAC
TGtttaaaaattcatgatattctcAATCGGGTATAAAATACACTCTTTTA
TTGATTATTGGTAGAACTATCTAAAATTTACGTGGCATTATTATAGAAAG
CATGAATTTAAATGTACTTCATTCAAACATTCAATAATTTATAAGGGGTA
AGAAAACCAAGCTTTCTTACgataaaattacatttcttcaaAATACTGCA
ATAAGTGAGCTGGTTATATTCAACTGAAGTAAAAAACTTCTTTCGAATAT
GGCTTCTTGTAAGATTTTATGTTTTATTGGTATAGCTGTTTTACTTATGG
AGAATGTGAGGGCGGACCGACAAAGAGAAAAAGGTAAACTTtgttacacc
cctgtttcataTCTAACCACTGAGCTAAGGTGATTTCaaatgtttaaaga
tttttcccctattttcccaaaataaggattatcaaaataaaagtttaaga
attttatacactttttttcagTAAACTGTGAAGAGGCCACTCAAGATAAA
TGTGAGAATTTTCTTTCATGGGAAGAACAATGCCCAAAGGAATGTGAACC
ACACCCAAACACATGCAGTTTTTGTCGAGACAAGATGTATTTTTGTGACG
ATTTAAAAGCTGACTCAACAGCTTGTGATGATTGGGAAGTTAAAGCATTA
TGTTTGAAAACTTGTGGCGAATGTTCGTGTACCAAACCAAGACACGAAGA
TTTATAAACGTTTTCCCTTGGGAAGgacgaaacaaaagaaaaattgaaat
aatacATTGTGTAAAACATCATTGtacattttattttctatatgTGACAA
GTCAGTAAAAATGAA
Run BLAST on NCBI

transcript from alignment at sc0000117:66761..68509+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010780 ID=TCONS_00010780|Name=TCONS_00010780|organism=Clytia hemisphaerica|type=transcript|length=1749bp|location=Sequence derived from alignment at sc0000117:66761..68509+ (Clytia hemisphaerica)
AAACATTGTATCGCGGCGTTCGACAAAATATAAATAGTTTCTTAGCCCAA
TATGCATTTTTTTCGGGATAATAAACTTGCATGCATATGGGAAGCTAATT
CTATCCCCGCGGGGCGTTATTCGGTTCTGAAATTCGAATTTTCGAAACGT
GCCGGAGCCACATTCTTgaggtcagaaaaaaaaatcatttagtTTTCAAC
TGtttaaaaattcatgatattctcAATCGGGTATAAAATACACTCTTTTA
TTGATTATTGGTAGAACTATCTAAAATTTACGTGGCATTATTATAGAAAG
CATGAATTTAAATGTACTTCATTCAAACATTCAATAATTTATAAGGGGTA
AGAAAACCAAGCTTTCTTACgataaaattacatttcttcaaAATACTGCA
ATAAGTGAGCTGGTTATATTCAACTGAAGTAAAAAACTTCTTTCGAATAT
GGCTTCTTGTAAGATTTTATGTTTTATTGGTATAGCTGTTTTACTTATGG
AGAATGTGAGGGCGGACCGACAAAGAGAAAAAGGTAAACTTtgttacacc
cctgtttcataTCTAACCACTGAGCTAAGGTGATTTCaaatgtttaaaga
tttttcccctattttcccaaaataaggattatcaaaataaaagtttaaga
attttatacactttttttcagTAAACTGTGAAGAGGCCACTCAAGATAAA
TGTGAGAATTTTCTTTCATGGGAAGAACAATGCCCAAAGGAATGTGAACC
ACACCCAAACACATGCAGTTGTGAGTAACTTGTAACATTTTCATATAACC
ATTTATGATGTTCCTTGAGGAAGTTTTATGAGAGAGCAGCCGAAAGAAAC
GACTATTTGACACCATTTCTACAAAGAAGACAAATGGCAAACGGATGCTG
TTTTTTCAGGCAATGGCGTATCTCCCAAAGTACATCTATCTGTAGCTTAA
GTGAGCCCTGAAGTCCTTGAAAATTCCAGTAGAATTTGTGTTTTACACGG
AAAAAGAGACACAATGCTATTTCAAGTATCAGTAACTTTATTCAGGTTGC
attgaaattttaattaattctaCCAGactaaaatttaaattaattccTTC
TATTTTATTTAGTTTGTCGAGACAAGATGTATTTTTGTGACGATTTAAAA
GCTGACTCAACAGCTTGTGATGATTGGGAAGTTAAAGCATTATGTTTGAA
AACTTGTGGCGAATGTTCGTGTAAGTGGCTTCTTGTATTCTTTTGGACTT
GACTTTTTTTTCGCTTTTAAGAGCCTTGGTAGAATGGCTTTTATGTTATT
TCTGAAGGTTAGGTTTTTAACCCTTTCGCTTTTTCCTCGGAAACTAAGGG
TAATAACCAGGCTTATAAGATATCGTCGTAGGCTAGAGTCGAATCTCCTA
TGTGGGATAAGAGCTTAATAACGTTCAAATTGCAGATTTCGAACGATAAA
AACGGTATACACAAACTtcaggcttcactttttctagcTTCGGAAGGTTA
AGATTCATTCACCTCTAGCCTTTGGCGTGACACTCAGTAACCACGATTTC
AAAGACTTGAATAACACAACCCTTTATAAAATTCTCTCGTCATGTTTAAA
ATTGTTTTGCAGGTACCAAACCAAGACACGAAGATTTATAAACGTTTTCC
CTTGGGAAGgacgaaacaaaagaaaaattgaaataatacATTGTGTAAAA
CATCATTGtacattttattttctatatgTGACAAGTCAGTAAAAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006054XLOC_006054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010780-exon-sc0000117-1491911889:66761..67530TCONS_00010780-exon-sc0000117-1491911889:66761..67530Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1510915933:66761..67530TCONS_00010780-exon-sc0000117-1510915933:66761..67530Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1575043694:66761..67530TCONS_00010780-exon-sc0000117-1575043694:66761..67530Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1491911889:67873..67980TCONS_00010780-exon-sc0000117-1491911889:67873..67980Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1510915933:67873..67980TCONS_00010780-exon-sc0000117-1510915933:67873..67980Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1575043694:67873..67980TCONS_00010780-exon-sc0000117-1575043694:67873..67980Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1491911889:68373..68509TCONS_00010780-exon-sc0000117-1491911889:68373..68509Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1510915933:68373..68509TCONS_00010780-exon-sc0000117-1510915933:68373..68509Clytia hemisphaericaexon
TCONS_00010780-exon-sc0000117-1575043694:68373..68509TCONS_00010780-exon-sc0000117-1575043694:68373..68509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:66761..68509 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.169773	0	0.667662	0.229724	0.490547	0.791508	13.2613	14.1976	8.99796	7.99318	6.27825	5.89311	7.95449	7.83416	7.40512	6.04069	2.47299	4.90956	4.25332	5.56745	1.44855	1.22386	0.244277	0.49776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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