|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010817 ID=TCONS_00010817|Name=TCONS_00010817|organism=Clytia hemisphaerica|type=transcript|length=3410bpRun BLAST on NCBI transcript from alignment at sc0000117:194847..206820- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010817 ID=TCONS_00010817|Name=TCONS_00010817|organism=Clytia hemisphaerica|type=transcript|length=11974bp|location=Sequence derived from alignment at sc0000117:194847..206820- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010817 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 271.552 bits (693), Expect = 3.546e-74 Identity = 196/698 (28.08%), Postives = 330/698 (47.28%), Query Frame = 1
Query: 931 LPHWVIYPAWCLNLIVIFGCAFIVVWYGISFGNKTSLDWLASVSIGLVQDILVIQPLKXXXXXXXXXXIVKKLDDEERSEIEKHVKTLAKNETWLHTSLEERDKTTIFDRIDTETAEPPNKEKLDRMRAARLKEIKMNAISREILLYLFFTCIVFILGFMTRDYRSFYQTRDLEELMLLKTRTDEDKSILKRYAPPFPFRKTHRHEHFWNWVEGFLLPELFPEKWFNISEEFNYDKNVFLFPNKLFLNDMNSKVVTGIRLRQVRVEKDSCIKAEEVRPFINIDCATGYSAARETRNDYNYNWSQPKTYKRSINPSDMPWRYQSWSDLDGYPMWAELDTYYGGGYVVELFPKWNNKAN-LENLKKRRWVDRHTRAVIVEFAIYNGNTNYFDSVNIIFEFPPGGGIVHYHSVITFKMYRYTDQYAFFMILCEVMFICFMIMFAIRESKVFYRTGMPYFKEFWNLVEFANIILSILAVFFNFYRDHLVKKLLSRLPRNERSPDKYINLQFAAYWDLVFTYIVALICFFVTLKFIKLLRFNRRISMLSSTLKRAWYPLMMFGICFGLVLASATMSATLIFGGNLYGYRSIGHSVSSIVSLLLGKFSYYQFESTNRVLGPVFFLSFNVFVNWIIMNMFISILNDVLIEVHTDVKLQNNDYEMVDYMLDSVKSWFGFSQSSKQKAVMQDAWEEDREEADNLANS 3021
LP W I W L AF + YG+ +G +SL WL S+++ V+ + V QPLKV A F AL++K++DDEE + L + L + + + +PP +++M+ LKE K A+ REIL YL F ++ ++ + RD +++ R L+ S + ++ FR+ F+ W L+ N++ P F+ D NSK+V ++RQVRV++ SC A++ + ++N C YS E DY W+ + W+YQS GYP+W +L Y GGGYVV L L L W+D TRAV VE +YN N N F V + E G + ++ + ++Y +TD + F++ E+++ F++ + + + K + YF WNL+E A I+ S A+ R L ++ L R RN R ++ I+ A D YI+A + T+K LLR N +++M+++ L+RAW + F I +L + ++++ LIFG L Y+++ + ++VSL LG F+Y + + VLG S VF+ ++++N+FIS++ E +L + + E+VD +L + S+ G ++ RE+ +L+ +
Sbjct: 1817 LPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLRWLISMAVSFVESMFVTQPLKVLGFAAFFALVLKRVDDEEDTVAPLPGHLLGPDPYALFRARRNSSR---------DVYQPPLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLNRHLQH------------SFTRGFSGVLGFRE------FFKWANTTLV------------------SNLYGHPPG-FITDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYLN-GCRAPYSLDAEDMADYGEGWNATTLSE---------WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRC-RNHR--EEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQKYYQL-SEEGEIVDLLLMKILSFLGIKSKREEPG-------SSREQPGSLSQT 2447 HSP 2 Score: 144.821 bits (364), Expect = 1.072e-34 Identity = 82/216 (37.96%), Postives = 130/216 (60.19%), Query Frame = 1
Query: 1 TTSNVYFTLSGDLGDTGVRVLKDPKRRTFQRSSSDVFVMTTAGSLGDLTYLKVWHDNKG--GGWYLRSLEIIDLQTEERFVFIAGRWLSVDQSDGLLECSLPVAGAIELKDFNYIFSAKSRRDLSDAHIWFSIYARPPRSNFTRSQRLSVGVSLLFTAMVASCMFFGLGRGDPAEENR-IGNFSFTWKQVYXXXXXXXXXXXXNVILVGLFRSIRP 639
T+S V TL G G+ L DP F+R + D F+++T LG+L L++WHDN G WY+ + + DL + ++ F+ WLS++ D +L+ PVA + K F+++F K+ D HIW+SI++R RS+FTR QR+S SLL M+ S MF+G+ + DPAE+ +G FTW++V I + S+ + PIN+++V +F++ RP
Sbjct: 1406 TSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPK-DPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRP 1620 The following BLAST results are available for this feature:
BLAST of TCONS_00010817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.