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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010818 ID=TCONS_00010818|Name=TCONS_00010818|organism=Clytia hemisphaerica|type=transcript|length=5317bpRun BLAST on NCBI protein sequence of TCONS_00010818-protein >TCONS_00010818-protein ID=TCONS_00010818-protein|Name=TCONS_00010818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1753bp ADKLLDSVDTTDTQSVASLVNVFILSANVPKVGEGGGTESVENEANFGGVRun BLAST on NCBI transcript from alignment at sc0000117:194847..218151- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010818 ID=TCONS_00010818|Name=TCONS_00010818|organism=Clytia hemisphaerica|type=transcript|length=23305bp|location=Sequence derived from alignment at sc0000117:194847..218151- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000117:194847..218151- >TCONS_00010818 ID=TCONS_00010818|Name=TCONS_00010818|organism=Clytia hemisphaerica|type=CDS|length=5262bp|location=Sequence derived from alignment at sc0000117:194847..218151- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010818 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 274.633 bits (701), Expect = 6.032e-74 Identity = 196/698 (28.08%), Postives = 330/698 (47.28%), Query Frame = 3
Query: 2838 LPHWVIYPAWCLNLIVIFGCAFIVVWYGISFGNKTSLDWLASVSIGLVQDILVIQPLKXXXXXXXXXXIVKKLDDEERSEIEKHVKTLAKNETWLHTSLEERDKTTIFDRIDTETAEPPNKEKLDRMRAARLKEIKMNAISREILLYLFFTCIVFILGFMTRDYRSFYQTRDLEELMLLKTRTDEDKSILKRYAPPFPFRKTHRHEHFWNWVEGFLLPELFPEKWFNISEEFNYDKNVFLFPNKLFLNDMNSKVVTGIRLRQVRVEKDSCIKAEEVRPFINIDCATGYSAARETRNDYNYNWSQPKTYKRSINPSDMPWRYQSWSDLDGYPMWAELDTYYGGGYVVELFPKWNNKAN-LENLKKRRWVDRHTRAVIVEFAIYNGNTNYFDSVNIIFEFPPGGGIVHYHSVITFKMYRYTDQYAFFMILCEVMFICFMIMFAIRESKVFYRTGMPYFKEFWNLVEFANIILSILAVFFNFYRDHLVKKLLSRLPRNERSPDKYINLQFAAYWDLVFTYIVALICFFVTLKFIKLLRFNRRISMLSSTLKRAWYPLMMFGICFGLVLASATMSATLIFGGNLYGYRSIGHSVSSIVSLLLGKFSYYQFESTNRVLGPVFFLSFNVFVNWIIMNMFISILNDVLIEVHTDVKLQNNDYEMVDYMLDSVKSWFGFSQSSKQKAVMQDAWEEDREEADNLANS 4928
LP W I W L AF + YG+ +G +SL WL S+++ V+ + V QPLKV A F AL++K++DDEE + L + L + + + +PP +++M+ LKE K A+ REIL YL F ++ ++ + RD +++ R L+ S + ++ FR+ F+ W L+ N++ P F+ D NSK+V ++RQVRV++ SC A++ + ++N C YS E DY W+ + W+YQS GYP+W +L Y GGGYVV L L L W+D TRAV VE +YN N N F V + E G + ++ + ++Y +TD + F++ E+++ F++ + + + K + YF WNL+E A I+ S A+ R L ++ L R RN R ++ I+ A D YI+A + T+K LLR N +++M+++ L+RAW + F I +L + ++++ LIFG L Y+++ + ++VSL LG F+Y + + VLG S VF+ ++++N+FIS++ E +L + + E+VD +L + S+ G ++ RE+ +L+ +
Sbjct: 1817 LPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLRWLISMAVSFVESMFVTQPLKVLGFAAFFALVLKRVDDEEDTVAPLPGHLLGPDPYALFRARRNSSR---------DVYQPPLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLNRHLQH------------SFTRGFSGVLGFRE------FFKWANTTLV------------------SNLYGHPPG-FITDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYLN-GCRAPYSLDAEDMADYGEGWNATTLSE---------WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRC-RNHR--EEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQKYYQL-SEEGEIVDLLLMKILSFLGIKSKREEPG-------SSREQPGSLSQT 2447 HSP 2 Score: 218.394 bits (555), Expect = 1.094e-56 Identity = 132/352 (37.50%), Postives = 203/352 (57.67%), Query Frame = 3
Query: 1515 FNYSLTTLCASCRYANLTTNTWQEDGCEIIPDRTRLSMTSCECNHFTSFGS-FVVKPNPLKPLTLAAL----KDGYVLLVTVGSIXXXXXXXXXFTRRADRDDSSKIGVCPLPDNRPEDRYLYEVTVNTGSRRRAGTTSNVYFTLSGDLGDTGVRVLKDPKRRTFQRSSSDVFVMTTAGSLGDLTYLKVWHDNKGG--GWYLRSLEIIDLQTEERFVFIAGRWLSVDQSDGLLECSLPVAGAIELKDFNYIFSAKSRRDLSDAHIWFSIYARPPRSNFTRSQRLSVGVSLLFTAMVASCMFFGLGRGDPAEENR-IGNFSFTWKQVYXXXXXXXXXXXXNVILVGLFRSIRP 2546
+TT + C + + TW + GC++ P RT T C CNH T FGS F+V N + A L +D V++ TVG + ++Y++ +++ RR D D +K+ V L DN P +Y Y VTV TG RR A T+S V TL G G+ L DP F+R + D F+++T LG+L L++WHDN G WY+ + + DL + ++ F+ WLS++ D +L+ PVA + K F+++F K+ D HIW+SI++R RS+FTR QR+S SLL M+ S MF+G+ + DPAE+ +G FTW++V I + S+ + PIN+++V +F++ RP
Sbjct: 1271 LTVGITTFLSHCVFWDEVQETWDDSGCQVGP-RTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPK-DPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRP 1620 The following BLAST results are available for this feature:
BLAST of TCONS_00010818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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