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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010856 ID=TCONS_00010856|Name=TCONS_00010856|organism=Clytia hemisphaerica|type=transcript|length=2010bp
TAGAACTTTGTCACCTGGGCTATCTACTTTAACTTATATGATATATGAAA
CCTCTCGAAGGGAGGGTGTCTGACTTTTATATATGGGGTTTCGTATTATA
GTTTCACTCTCCTTTGCACTGATCAATTGAGTTTATAAAGAGTGAAACGC
TTGATGAAATGCAATATTTCATTTATCAGGTCAAACAATCTGAGAAAtat
caaataataaaaaaaaattttcgttttcAGAGAAATtactatcaaaaata
tttttaaacaatccAAAACTGCAGTTTTAATCCTACAAGACCATGAAGTC
ATTGAATCTTGCAACCTTGGTCCTTCTCGGGCTCATTTGTTCCATTTATT
GCCAACCGGTAAAGAAAAACGTCTCAAATTTGGAAAAGAATAATAATGAA
TTATGGTACATCCAGAACCGCGCATGTGCACATAAGTACGCCCGACAATT
GATAAAATGTGGCAAAGAATCCCACGCGACGTTGACCAGAAAAGAAGTCT
ATGAGTTTTGTTTGAACCAGattaaagaaaaatgtaaagaagaaaaagag
cAACAAAAGATTGTGCTGACTGGTGAGAATTTGAAAGAACGAATCAAAAA
GTTACGGCAAAAGTTGAGAAGTGCGTGGTAATATGATGTTTGTATTGTAA
TAATACCTgtaaaacaaaatttgattctAAGGTTTAGTTACTCTGGTAAT
TAACCATGGAAGAGGAGATATATCTGGACAATACTTGGAACCTACCTATC
TTATGAAGTTAGACAATCCCAGGGTCGAAATCGAAAGACGTTGTCGCACT
CACAAGAATTATATATTTAGATTGATATTGCTCCATAGTTTCCTGAGACC
TAATCCCCTTTTGGCCTTAGCGTTGACAGATAAATTGTTTCAACATCGAA
TCCGAAAAACTGTATTTttgaacacccccttctcacagacccggtgggat
ttttatAAGTCAGTTGAGGGGTGGGGGATAACAGACATAACCCtatgttt
ttttatggctggagatttgaagtccattgttttctagaaaatccaatggg
gatagaaatattagcataatattttgcagtgaggatttgcttatctgatt
attttcagtgggacaaaaattagagcaTAATTTTCCACAGGGGACGATAT
TTTGTCCAATTTTTCCACCGGGAAGGGTTCccaatgggtctgtgagaagg
ggtggcTTTAAAGCAAATCTTGGAGTTGCAGCCTAAACAAAGatagtttt
tttttggaaaataattttatcaCTAATAATGTTATCACCAATTGTTCAGC
ATCATGAAATTTGAATCGAGATTCCCCCTATTTCCACTCCTCCTGTAAAA
GTCTTTAATTTCGTTACTGACGCACATTAGGCgacatttttgtaatcaaa
aggCTAACcataaaaccagaaaattcatcaaaagaAAACAACTATGATTT
GTCACCGCAAAGTAGTTCATAATATTTTCGATGCTTCTACTTAATTGCCA
AAGTAAACAGAAACACAGTTTCGAGATTTGTTACATCCCTGTATCGATGA
CTCACCAGGCCTGTAAAATTGGCCTGTAAAGTCTTGTTTTAGTGATATAC
AACTTCGTAACAAGCTAACTAAAATGGGTAGCTAATTGAGTTTTGCCTGT
AAAATAGAATCAACATCTAGAAATTGGTTGATATAAGGTTATCTGAAAAT
ATAAGTCTAAGATATTTTTCCCTACTACATTTTTAAAAGTTCGATAATAT
TTTACATTAATGTATATTTTAAATTTCCATGTCTTATCATTAtaattatt
taatattttcaaagattttttaaagcagaTATAAAATAACatgtaaatat
ttttgtgtgttttgtcaaagtttttgttgtgaaaagaaaaagatttaagT
CAACCATTAATACGTAagattttatttacaaaatatatttcaaaaccaaa
aatgttaaaaaccttTAACCCAGAGAGAGTACCTGAGGAACTGTAGTAAA
GCTACCTGCG Run BLAST on NCBI protein sequence of TCONS_00010856-protein >TCONS_00010856-protein ID=TCONS_00010856-protein|Name=TCONS_00010856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MKSLNLATLVLLGLICSIYCQPVKKNVSNLEKNNNELWYIQNRACAHKYA
RQLIKCGKESHATLTRKEVYEFCLNQIKEKCKEEKEQQKIVLTGENLKER
IKKLRQKLRSAW Run BLAST on NCBI transcript from alignment at sc0000117:542021..544030 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010856 ID=TCONS_00010856|Name=TCONS_00010856|organism=Clytia hemisphaerica|type=transcript|length=2010bp|location=Sequence derived from alignment at sc0000117:542021..544030 (Clytia hemisphaerica)
CGCAGGTAGCTTTACTACAGTTCCTCAGGTACTCTCTCTGGGTTAaaggt
ttttaacatttttggttttgaaatatattttgtaaataaaatctTACGTA
TTAATGGTTGActtaaatctttttcttttcacaacaaaaactttgacaaa
acacacaaaaatatttacatGTTATTTTATAtctgctttaaaaaatcttt
gaaaatattaaataattaTAATGATAAGACATGGAAATTTAAAATATACA
TTAATGTAAAATATTATCGAACTTTTAAAAATGTAGTAGGGAAAAATATC
TTAGACTTATATTTTCAGATAACCTTATATCAACCAATTTCTAGATGTTG
ATTCTATTTTACAGGCAAAACTCAATTAGCTACCCATTTTAGTTAGCTTG
TTACGAAGTTGTATATCACTAAAACAAGACTTTACAGGCCAATTTTACAG
GCCTGGTGAGTCATCGATACAGGGATGTAACAAATCTCGAAACTGTGTTT
CTGTTTACTTTGGCAATTAAGTAGAAGCATCGAAAATATTATGAACTACT
TTGCGGTGACAAATCATAGTTGTTTtcttttgatgaattttctggtttta
tgGTTAGccttttgattacaaaaatgtcGCCTAATGTGCGTCAGTAACGA
AATTAAAGACTTTTACAGGAGGAGTGGAAATAGGGGGAATCTCGATTCAA
ATTTCATGATGCTGAACAATTGGTGATAACATTATTAGtgataaaattat
tttccaaaaaaaaactatCTTTGTTTAGGCTGCAACTCCAAGATTTGCTT
TAAAgccaccccttctcacagacccattggGAACCCTTCCCGGTGGAAAA
ATTGGACAAAATATCGTCCCCTGTGGAAAATTAtgctctaatttttgtcc
cactgaaaataatcagataagcaaatcctcactgcaaaatattatgctaa
tatttctatccccattggattttctagaaaacaatggacttcaaatctcc
agccataaaaaaacataGGGTTATGTCTGTTATCCCCCACCCCTCAACTG
ACTTataaaaatcccaccgggtctgtgagaagggggtgttcaaAAATACA
GTTTTTCGGATTCGATGTTGAAACAATTTATCTGTCAACGCTAAGGCCAA
AAGGGGATTAGGTCTCAGGAAACTATGGAGCAATATCAATCTAAATATAT
AATTCTTGTGAGTGCGACAACGTCTTTCGATTTCGACCCTGGGATTGTCT
AACTTCATAAGATAGGTAGGTTCCAAGTATTGTCCAGATATATCTCCTCT
TCCATGGTTAATTACCAGAGTAACTAAACCTTagaatcaaattttgtttt
acAGGTATTATTACAATACAAACATCATATTACCACGCACTTCTCAACTT
TTGCCGTAACTTTTTGATTCGTTCTTTCAAATTCTCACCAGTCAGCACAA
TCTTTTGTTgctctttttcttctttacatttttctttaatCTGGTTCAAA
CAAAACTCATAGACTTCTTTTCTGGTCAACGTCGCGTGGGATTCTTTGCC
ACATTTTATCAATTGTCGGGCGTACTTATGTGCACATGCGCGGTTCTGGA
TGTACCATAATTCATTATTATTCTTTTCCAAATTTGAGACGTTTTTCTTT
ACCGGTTGGCAATAAATGGAACAAATGAGCCCGAGAAGGACCAAGGTTGC
AAGATTCAATGACTTCATGGTCTTGTAGGATTAAAACTGCAGTTTTggat
tgtttaaaaatatttttgatagtaATTTCTCTgaaaacgaaaattttttt
ttattatttgataTTTCTCAGATTGTTTGACCTGATAAATGAAATATTGC
ATTTCATCAAGCGTTTCACTCTTTATAAACTCAATTGATCAGTGCAAAGG
AGAGTGAAACTATAATACGAAACCCCATATATAAAAGTCAGACACCCTCC
CTTCGAGAGGTTTCATATATCATATAAGTTAAAGTAGATAGCCCAGGTGA
CAAAGTTCTA Coding sequence (CDS) from alignment at sc0000117:542021..544030 >TCONS_00010856 ID=TCONS_00010856|Name=TCONS_00010856|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000117:542021..544030 (Clytia hemisphaerica)
TTACCACGCACTTCTCAACTTTTGCCGTAACTTTTTGATTCGTTCTTTCA
AATTCTCACCAGTCAGCACAATCTTTTGTTgctctttttcttctttacat
ttttctttaatCTGGTTCAAACAAAACTCATAGACTTCTTTTCTGGTCAA
CGTCGCGTGGGATTCTTTGCCACATTTTATCAATTGTCGGGCGTACTTAT
GTGCACATGCGCGGTTCTGGATGTACCATAATTCATTATTATTCTTTTCC
AAATTTGAGACGTTTTTCTTTACCGGTTGGCAATAAATGGAACAAATGAG
CCCGAGAAGGACCAAGGTTGCAAGATTCAATGACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010856-exon-sc0000117-1491911889:542021..544030 | TCONS_00010856-exon-sc0000117-1491911889:542021..544030 | Clytia hemisphaerica | exon |
| TCONS_00010856-exon-sc0000117-1510915933:542021..544030 | TCONS_00010856-exon-sc0000117-1510915933:542021..544030 | Clytia hemisphaerica | exon |
| TCONS_00010856-exon-sc0000117-1575043694:542021..544030 | TCONS_00010856-exon-sc0000117-1575043694:542021..544030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:542021..544030 . |
Blast
The following BLAST results are available for this feature:
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