TCONS_00010858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010858
Unique NameTCONS_00010858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010858 ID=TCONS_00010858|Name=TCONS_00010858|organism=Clytia hemisphaerica|type=transcript|length=461bp
ATTTGGTGATGAGTTTCTGTCAACCTTTGCATATGTTTGAAAAGGGTTGC
GAGTGTTTTCTGGTCGATTCCGGTTCTCTTTTGATTTAGATTCTTCAGAG
TCTTCAGAATTTGATGAAGTAAACTTGTTTTTATCAAGGTTGTAGGTAGC
TATGGTCGATCCACTTTTTCCCTTGCTATTGATGCTTGGAGTTGGTGAGG
ATTTGGTTTCATCGTTGATATTGGTGATGGCGTCATCTACGGAAGGAGAT
GAAGATGTTTGATAAAATGGAGCTTTAGTTGTTTTCGGGTTTTGTTCTGA
AGTCTCTGTCTTGTCATTTGTCAAAGGTGTTGTCGTGGAGAGATCTCCGC
CTCTGACGAAAACTGTTCCTTTCCCGAGCTTCCCCGGATTACCGTCCATT
AGATAGTCTGTGTTTGTAAAGGGTTTTCGTCTGATGTCTACCATAGATGT
GTAGTCTAGAG
Run BLAST on NCBI

protein sequence of TCONS_00010858-protein

>TCONS_00010858-protein ID=TCONS_00010858-protein|Name=TCONS_00010858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
LDYTSMVDIRRKPFTNTDYLMDGNPGKLGKGTVFVRGGDLSTTTPLTNDK
TETSEQNPKTTKAPFYQTSSSPSVDDAITNINDETKSSPTPSINSKGKSG
STIATYNLDKNKFTSSNSEDSEESKSKENRNRPENTRNPFQTYAKVDRNS
SPN
Run BLAST on NCBI

transcript from alignment at sc0000117:559562..560022

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010858 ID=TCONS_00010858|Name=TCONS_00010858|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0000117:559562..560022 (Clytia hemisphaerica)
CTCTAGACTACACATCTATGGTAGACATCAGACGAAAACCCTTTACAAAC
ACAGACTATCTAATGGACGGTAATCCGGGGAAGCTCGGGAAAGGAACAGT
TTTCGTCAGAGGCGGAGATCTCTCCACGACAACACCTTTGACAAATGACA
AGACAGAGACTTCAGAACAAAACCCGAAAACAACTAAAGCTCCATTTTAT
CAAACATCTTCATCTCCTTCCGTAGATGACGCCATCACCAATATCAACGA
TGAAACCAAATCCTCACCAACTCCAAGCATCAATAGCAAGGGAAAAAGTG
GATCGACCATAGCTACCTACAACCTTGATAAAAACAAGTTTACTTCATCA
AATTCTGAAGACTCTGAAGAATCTAAATCAAAAGAGAACCGGAATCGACC
AGAAAACACTCGCAACCCTTTTCAAACATATGCAAAGGTTGACAGAAACT
CATCACCAAAT

Coding sequence (CDS) from alignment at sc0000117:559562..560022

>TCONS_00010858 ID=TCONS_00010858|Name=TCONS_00010858|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000117:559562..560022 (Clytia hemisphaerica)
CTAGACTACACATCTATGGTAGACATCAGACGAAAACCCTTTACAAACAC
AGACTATCTAATGGACGGTAATCCGGGGAAGCTCGGGAAAGGAACAGTTT
TCGTCAGAGGCGGAGATCTCTCCACGACAACACCTTTGACAAATGACAAG
ACAGAGACTTCAGAACAAAACCCGAAAACAACTAAAGCTCCATTTTATCA
AACATCTTCATCTCCTTCCGTAGATGACGCCATCACCAATATCAACGATG
AAACCAAATCCTCACCAACTCCAAGCATCAATAGCAAGGGAAAAAGTGGA
TCGACCATAGCTACCTACAACCTTGATAAAAACAAGTTTACTTCATCAAA
TTCTGAAGACTCTGAAGAATCTAAATCAAAAGAGAACCGGAATCGACCAG
AAAACACTCGCAACCCTTTTCAAACATATGCAAAGGTTGACAGAAACTCA
TCACCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006099XLOC_006099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010858-exon-sc0000117-1491911889:559562..560022TCONS_00010858-exon-sc0000117-1491911889:559562..560022Clytia hemisphaericaexon
TCONS_00010858-exon-sc0000117-1510915933:559562..560022TCONS_00010858-exon-sc0000117-1510915933:559562..560022Clytia hemisphaericaexon
TCONS_00010858-exon-sc0000117-1575043694:559562..560022TCONS_00010858-exon-sc0000117-1575043694:559562..560022Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010858-proteinTCONS_00010858-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:559562..560022 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.16255	1.08325	0	0	4.62803	2.98773	0.322842	0.58702	2.26731	1.34902	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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