TCONS_00010869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010869
Unique NameTCONS_00010869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010869 ID=TCONS_00010869|Name=TCONS_00010869|organism=Clytia hemisphaerica|type=transcript|length=2378bp
CGATTACATTCTCGATGCCGAGactattttttggcttttttggcTCGTAA
AAATGAGTTTATCACGCGTAacttgacattaaaatttgacgTAAATTTTC
GTTGGTATTGGGATTGTAATCATGAGGCTATTTTGCTTGATTGGATTTTG
GCTCAGTCTGGGGTgtgtattttgcagaccagatttGTTCCACGAGAATG
ATGATGATGACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGAATGGA
GGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTTGTTTGCCTGG
TTGGATCGGAACCAATTGTGAACGACGGAACGCGTGTTTTCCGAATCCAT
GTCATTACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGTGC
AAAGCTGGATTCAAAGGGAATCTCTGTAATGTACTGGATCATTGCCATCC
GAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGTAC
AATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAATGGAATCA
AAATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGAGAATT
TGTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGTTAATT
GTGAAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGAAA
CAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGTGA
CATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAATCCGT
ATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAAAC
CCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAATGA
AGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGGTG
ACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTACA
TCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGATGA
CCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCATG
AATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTGAATCA
GTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAATGATGA
AGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAATAA
AGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAAACGAA
AAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGATTTACC
ACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaacaaaac
aaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAGAT
GCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGCCC
GAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGACATGT
TAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTAAA
AGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCACA
AGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGGAC
AAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacattttatg
CAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAACGCCAA
ATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGGCG
CTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATGCTTAT
ACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAATCCGGG
AAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTGTC
CGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGATGT
TGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAAAA
GCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTTGCCCG
ATGAAGGTAGGAAGAAGGCTTGAAATAGTGtatatataccctggacaaag
tttCGCGATCacggtgaagaaaaaaagtttttttaatgtggtaccctaat
ggtagcctAGATATCTAAGCCAGTTTTCAGTCACTTGCTATAAAATATGA
aagttaagttgtgactgaaatACTGTTATTCAGCGCTAACTTAAATTTCA
CggatataaaaaaatcattaaagcacCG
Run BLAST on NCBI

transcript from alignment at sc0000118:65468..74995+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010869 ID=TCONS_00010869|Name=TCONS_00010869|organism=Clytia hemisphaerica|type=transcript|length=9528bp|location=Sequence derived from alignment at sc0000118:65468..74995+ (Clytia hemisphaerica)
CGATTACATTCTCGATGCCGAGactattttttggcttttttggcTCGTAA
AAATGAGTTTATCACGCGTAacttgacattaaaatttgacgTAAATTTTC
GTTGGTATTGGGATTGTAATCATGAGGCTATTTTGCTTGATTGGATTTTG
GCTCAGTCTGGGGTgtgtattttgcagaccagatttGTTCCACGAGAATG
ATGATGATGGTAAGATTTTAAAGACCCAGAAAAGGTCTCATATACAACAA
CATCACCATGACGACACGCAAAAACACAAACGACAGCAAATGACCAATCA
TAACGCACGACGCAATACACAACACAAAAGACACTAcatgacaaaaaata
acaatGTTAAGGAGCTTAATACCAAACGACACGCAATTATAAACAACGTT
AAATCAAGCCACAAAACGACGGCTTCAAAGCGACACACGATCACGTCAAA
ACAACATAGAACAGTCACAAAATACCATCCACTACGATCACAACATAACG
ACAAACGTTCCAAAACGCGACAACAAAAACACAAACACTTTACACGACAT
ACAATCACTCATCCACAACAGGCACAACACGTGTCAACAAAAAAAGACAG
TCTCACAACACACCAAAAAATCACTAAACCAACAAATTTCACCAAAGATG
AAAACCATAAAAAAGCGGAAGTCTTTTTACTGGATGCATCGAAAATTGAT
GAAGATGGGGTCGTCAGAGGTCGAGACACAACCTCCAGTGCTGTCGGTAA
CATTATAGCTCCTGAAGAAGATGTGTTAGCAAGtaagaaagaaaatatca
atAACCTTCTTACCAATGCTGATGGTAAGAATCCAGAATCATTGGAGCAG
AATCTGATGATGAACCAAGATTCAGCTAAAGGAAGCATTGTTCCGATGTC
TGTATCCTTTGGTGGTTTCAAATCACTCGACGATGCTGTGTTGCAATCGA
ATATACCAGCTGAAGTTGATTATCTGAAAGGGAGTTATAATGGGAACAAG
GATTTCATGAAGAGCTTGCAGACGCCAACAGATGGACCTGAAGAGCAAGC
AGTTAGTCGACAATTAGCAGGGGTCGAAGGACAGAAGACAGAATCGTTGT
CCAAATTTATAGAGAGTAATGATCCACAGGGGGAATTATCAAAGATCGGT
GATTCCTTGACGATGTCAAAAATTGAACCAGGAGAGCTTCAAACTGGGGA
ATCTTCAAAGATTAGTGATTCCTTAACCACATCTAAACTTGATTCAGGTG
ACCCTTCAAAAATGATGGATTCTATTTTAGAACCAATCAAGACATCAGCG
AAATATTCACCAACAAGTTTTATGAATACAGAAACAGCCATTAAAGGTGA
CCCTGCCTTCTCACAAGCCGTAACCCAAGACaatttactggacaactcag
tCAAAGAAGCTATAAATgcagaaatgaaaaaagatattgaTCTAGCCACG
GGTGAAGAGAAACAAACGGATACACGTTCGTCTGCTTATGAATATAAACC
CAAggaatcttctttttcaaatgtCAAGGAATTCCCTTCTTCTATGGTGG
GTGATATCGCGACTGTAGCGGAGGCGGTTGATAAAGCAGCCGTCAGTCGC
TCACATAAAATGAAATATAAGAAACAGCGCGAGAAAGTTGGGAAGTCCAA
GAAACTAGTCAAACAGAGGTCTTCGAATAAACATCATAAAACATCGACAC
GTTCGAAATCCTTACACTCGCTGCCGACAGTTCCAAAAGTCAAAACAACA
GCTCAACAAAAAGTAGAGGAATCCCCGAAACAAATGACAGGGGAAGCACC
ATCTATAGAAGAGCAGCATGTGATTCCCCAATTATCCGATTCCCTGGACG
TCAATACACATCCTTCGGCACTGACCGCGAGTGAACAGAATCTGATCGCG
TCTATCGACCGCGCGGCCCGAAAGAAGGACGTGGCGAACGAAATGGTTAA
CCGTATCATGATGCCGACTAAAAGTGATCCTTTCTCAGACCAAGCTCTCA
CTCCACCTGAACAACTCCTCGACATGCTCTCCAATGGAAAATTCAACGAC
CCCTTACCTGAAAGCGTACTCGACCGCTTATCCAATCTTGATCCGAACAA
AGCTATGTTACCTGATTCAAACGCTTTCATgcaaccaaaacaaaaaagcc
CTACTTCAGGTTTAATGCAAGTTGGGTCTGAATTACTACCAGTCAAAAGC
GTCGCTTTAAACCAGCCGCAAGTTACACCACAACCGCTTCTAGACACAAG
AGAGTTAGCGAGAGCTGAgaaacaaatgaaaacaaaccCATATTACCTAG
CCCAGAATAACATGCTGTTAGACGCAAACAATTTCAAAAGCATGCAAGAT
CTTTCTAATATTGGAGAAGCGATGTTTTCTAAGAACGTTATCGACTTAAA
ACAGCCGATGATGATGGGCGGAAACGAATTGGCTGAGGGTGGTTTTAATG
ATAACACCCTTTCTTTCGGGGCGTCATTAGGTGAACCGTCTTCCACAAGT
AGCACGGCAGTTGCAAGAAACCAGATGAATAATAATAAAAACCTTCAATC
GGTTACCGGTAAAACAAGATGTCCCAATTGCGTCACCGGTGGACAATATG
GTAGCCAAGCTGCAGGATTTTCTCCACAGCGTTTACTACACAAAGAATCC
CACTTTGTACATAATGATATCGATCCTTTAGTGTTGGAGCAGATCCGACA
TCTACCGACAGTGAATATGAAGAAATTGATAGAAACACACAGGAAGAAGA
CTGGACACAACAAACACAAAGGGAAAACAACTTTCCAAGATGCAATGTCT
GATACGAGTGTCTCACATAACACGGACGATGAATTCGTACCTGAGAAAAT
TGTCACTCTTCCTGAAGAGCACGTCAATCGTAAGTCGGTGTTCTTTAAGA
CCTATTCGCACTTTGATACAGTATAGAAAACGCCCTTGCCGCGCAGCCCT
GGCTTACTATTCCCCATAAGTAGTGAGTTAAAAAttcctatcgaaatccc
aatagaatagggatagaaattttattgttcccaGCTCAAAAAAcccaatg
gggatggttttggagtgcaattttttatatcaaaattttgaatggggata
aAATGAAAGTCCATTTTCAGTTGGCTGAAACtgtagggtatttttttcaa
ccggatatgaaattttggtcaatttttttagTTACCGGGTCTGTAACACA
GAGAGGTGTGTTCGTAGCCTCTCTAATCAGTAACCAGACCTTACAACATA
ACTGTGACTTTGACGCTGACGTTGACGGTATCGACCACGTctttaaataa
aacaaaaatttcacatATTCACAGTTTTCATATTATTAAACTAAAGaacg
tttttcttttgaatggTAGGAAAAAGTTTCCATAAAAAGTAGGCCCTTGT
TAAACATATTTATTTCTGAATGCTACCTTTCGGCTAACCATTTTTGGTCC
TCAATCACAAACAACTATCCATACAGACTTTCGAACGTCACGTGATCTAT
TTTTAGCAATCTGATTCGTCGAAAACTGTGACGTAACGTATGAAAATCCA
TCCCATCTCACTAGTCTGTCCAGCCCGCCTCAATATAAACAGCACCTAAT
GGATTCTTTTGTTCCGATTCTCAAAATACCAGCCCCTGCCCAACTGGCAC
Acgacgtcgtttcaacgttcatttaacgttatatggacgttgtgaacgtt
agataaacgtctaaaaaacgttgtgtgccagctgggtgacTATAAGCAAG
AAATGTACCCATATGGCTATAGGcaatttcacagtcgcaaagcgtaatgg
gtaatcaggaccactgtgCGCTAACGACGatttactattggtccaaagtt
ttgaaatttttttaagatttttgcgtcCAGCCAACGGGAGGCCGTTAAAG
ATGCGCAaacagtcctgattacccatgatccatttcgactgtgaaatggc
ctataagCAAGAAATGTACCCATATGAACCATCACTgacttaaaaaaact
ttattctcTTTGTTCACAGACGGGTACGCAGTTTGCAAGTATGGACCTTG
TTTGAATGGAGGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTT
GTTTGCCTGGTTGGATCGGAACCAATTGTGAACGTAAGAAGCTCATTTGA
TGAAATAAATTTGTTCTTAGTATGCAATCTCTTAATCACTAGAATCTGAT
GGGTTCTTGAGATTGCAATCTTCTCCATATTTGCACNGCTTAGTATGTAG
TCTCTTAATCACTAGAATCTGATGGGTTCTTGAGATTACAATCTTCTCCA
TATTTGCACGATTCATTTATATTATATTTGCTTATTCCCGAGGTATCATA
GAAAATCTTTCTAGCTAGCAACTATTGATTCAATTTCTGAATTAATTCAC
TtgtggtgtaaatgcatcgagatcGCTGGAGGATAGAAAGCCCATGTTCC
GAATCACGAGACCCTAGGTTTGGCTCCCACTACATAATAGTCTAGAACAT
TTCACATTCTCTTAAAGGACGGAACGCGTGTTTTCCGAATCCATGTCATT
ACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGTGCAAAGCT
GGATTCAAAGGGAATCTCTGTAATGGTGAgttctttttttctgttttacg
TTTTGACGATCACGTGGAACATTCATTTTCTCGGCCGAATACCTAATTAC
ACGAATCTTACTAGTCAAGTATTCAACGGCTTtaaaattaacacgcaaaa
aaacaacacgaattttatttgctttttcaaggacaccacagctggtttta
attaaaggGGTTTTAAATAACACGAAATTTCTTAATTCGTGTTAATTACA
TGTCTACTtattttcgtgtaataaggtaactTTAGAGTTTCATTTCATGA
GCAAATTTTCTCAGTCAAAACGTTCTCTTTTCAAATTTGGGAATAGAGTT
GAACTGTCTTTGACAAGTTATTTTATTGGCTAATAGTGATTTTTGATCAT
GTTTTGTTTAGTTACGTAATAATAATTACATATATAACATAACATATATA
ACATGAAAGACCTCTATTTTCACGGCAAATAACTTCCAAGCTTGAATTCC
ATCACACCAGCtaatcttttaaaatgtttaataACCTGATGGATCAGGTC
GGGTTATCGTGGTACATTGGTATAACCCGGGCAGTGAAATCCACTGTCCT
GCTTCTTACCCAAACTAGAATTATGCAACACCCATCCACTGTCCCGTTTC
GTACTCAAACTAGAATTATACCACACCCGTCCACTGTGGATGGGCGTAGT
gctgttccaattttttttgcgaagcgggacagtcaAGAAAAGTCGTTTTG
GGTGCGATGCGGGACAGTCAGAAGTGACGGAGAATtgttttggtctgtaa
aatttatgttGGGCACGAAGTTGCTTTCAGTGTCCGGGTCATACCCATGT
ACCACGCTAACCCGACCTGATCACAACAGTCAAACTAACAAGTCACTGTT
TTGCAAACTAAGATCAAAATAATAATTAGTGCAGTGAAAATAATTCCACT
CAATCATTTCTTCCTACAGTACTGGATCATTGCCATCCGAATCCATGCCA
TAACAACGGTTTGTGTACAGAAACACAACATGGTGTACAATGTGAATGTT
CACCTGGTTTCAAGGGAAGGCTCTGTGAAAGTAAGTATCATCTTGTTCAA
TCCCTCTAATTTAGCCAACAACCAAGCGGTTACATTAAGACTCTCGCTGT
AGCCAAGTTGAAACCGTAGATAAGTCGGGTCAAAAACTTAAAAGTAAGAT
CTGACCGTACTGAATATTTTCAAGATTCCGATTTCCAACCTAATTTGGAT
TGTATTCGTTTGGATTNTTGTACGTGCAAAGCTGGATTCAAAGGGAATCT
CTGTAATGGTGAGTTCTTTTTCTGTTTTACGTTTTGACGATCACGTGGAA
CATTCATTTTCTCGGCCGAATACCTAATTACACGAATCTTACTAGTCAAG
TATTCAACGGTTTtaaaattaacacgcaaaaaaacaacacgaattttatt
tgctttttcaaggacaccacagctggttttaattaaaggGGTTTTAAATA
ACACGAAATTTCTTAATTCGTGTTAATTACATGTCTACTtattttcgtgt
aataaggtaactTTAGAGTTTCATTTCATGAGCAAATTTTCTCAGTCAAA
ACGTTCTCTTTTCAAATTTGGGAATAGAGTTGAACTGTCTTTGACAAGTT
ATTTTATTGGCTAATAGTGATTTTTGATCATGTTTTGTTTAGTTACGTAA
TAATAATTACATATATAACATAACATATATAACATGAAAGACCTCTATTT
TCACGGCAAATAACTTCCAAGCTTGAATTCCATCACACCAGCtaatcttt
taaaatgtttaataACCTGATGGATCAGGTCGGGTTATCGTGGTACATTG
GTATAACCCGGGCAGTGAAATCCACTGTCCTGCTTCTTACCCAAACTAGA
ATTATGCAACACCCATCCACTGTCCCGTTTCGTACTCAAACTAGAATTAT
ACCACACCCGTCCACTGTGGATGGGCGTAGTgctgttccaattttttttg
cgaagcgggacagtcaAGAAAAGTCGTTTTGGGTGCGATGCGGGACAGTC
AGAAGTGACGGAGAATtgttttggtctgtaaaatttatgttGGGCACGAA
GTTGCTTTCAGTGTCCGGGTCATACCCATGTACCACGCTAACCCGACCTG
ATCACAACAGTCAAACTAACAAGTCACTGTTTTGCAAACTAAGATCAAAA
TAATAATTAGTGCAGTGAAAATAATTCCACTCAATCATTTCTTCCTACAG
TACTGGATCATTGCCATCCGAATCCATGCCATAACAACGGTTTGTGTACA
GAAACACAACATGGTGTACAATGTGAATGTTCACCTGGTTTCAAGGGAAG
GCTCTGTGAAAGTAAGTATCATCTTGTTCAATCCCTCTAATTTAGCCAAC
AACCAAGCGGTTACATTAAGACTCTCGCTGTAGCCAAGTTGAAACCGTAG
ATAAGTCGGGTCAAAAACTTAAAAGTAAGATCTGACCGTACTGAATATTT
TCAAGATTCCGATTTCCAACCTAATTTGGATTGTATtcgtttggattttt
ttttgaacGTATCGGCAAGTATACAAGCTTAATCCTCTCTGGCGATCACA
CGCCAACTTTTTCGGACGGCACTAAATcttagaaaagtcaaaaaagaatC
GCATAATAGATCAGCTAAAGATTAGATTTGGTGTTCACGTGCTCGTAGAT
AGGAAGTAACAAACCCTGACTCCGTTTAAGTCAACTCTTTTCTTTTACTA
AACGTTTTAGTGGAATCAAAATGCGAGCCGATCAATCCATGCTTGAATGG
AGGGACGTGTCGAGAATTTGTGGATCATTATTACTGCGCATGTCCGTTGA
GTTTCCGAGGTGTTAATTGTGAAGGTTCGTATTAGAGGAATTACTTTACA
AATAGTTTTTTGTAATTCCAGAGCAAAGCTCAGTTTAAATGCAGTCACCC
CAAGGTTTAAGAAGATATAATCAAAGCTAGTGGCAAAGCTAAAAGAAAAT
AGGAAGTGGTCTTTTTATGACCTCATCGCACGAAACCAAGAAAATCCAGA
AACTACAATctaaaaaagacgaaaaaactaTGCACAAAAGTCACCAAATT
AGTACAATCTAGTTGGAATGTAACTATTAGCATCtagtcaaaatacaaaa
tagcCAGTCTCAAAACAAAACTGCTCAACCAGTAACATTTCACCTTTTCC
TCATAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGAAA
CAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGTGA
CATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAATCCGT
ATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAAAC
CCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAATGA
AGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGGTG
ACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTACA
TCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGATGA
CCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCATG
AATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTGAATCA
GTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAATGATGA
AGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAATAA
AGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAAACGAA
AAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGATTTACC
ACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaacaaaac
aaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAGAT
GCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGCCC
GAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGACATGT
TAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTAAA
AGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCACA
AGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGGAC
AAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacattttatg
CAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAACGCCAA
ATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGGCG
CTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATGCTTAT
ACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAATCCGGG
AAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTGTC
CGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGATGT
TGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAAAA
GCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTTGCCCG
ATGAAGGTAGGAAGAAGGCTTGAAATAGTGtatatataccctggacaaag
tttCGCGATCacggtgaagaaaaaaagtttttttaatgtggtaccctaat
ggtagcctAGATATCTAAGCCAGTTTTCAGTCACTTGCTATAAAATATGA
aagttaagttgtgactgaaatACTGTTATTCAGCGCTAACTTAAATTTCA
CggatataaaaaaatcattaaagcacCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006107XLOC_006107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010869-exon-sc0000118-1491911889:65468..65676TCONS_00010869-exon-sc0000118-1491911889:65468..65676Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1510915933:65468..65676TCONS_00010869-exon-sc0000118-1510915933:65468..65676Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1575043694:65468..65676TCONS_00010869-exon-sc0000118-1575043694:65468..65676Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1491911889:69487..69600TCONS_00010869-exon-sc0000118-1491911889:69487..69600Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1510915933:69487..69600TCONS_00010869-exon-sc0000118-1510915933:69487..69600Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1575043694:69487..69600TCONS_00010869-exon-sc0000118-1575043694:69487..69600Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1491911889:69985..70092TCONS_00010869-exon-sc0000118-1491911889:69985..70092Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1510915933:69985..70092TCONS_00010869-exon-sc0000118-1510915933:69985..70092Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1575043694:69985..70092TCONS_00010869-exon-sc0000118-1575043694:69985..70092Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1491911889:72318..72428TCONS_00010869-exon-sc0000118-1491911889:72318..72428Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1510915933:72318..72428TCONS_00010869-exon-sc0000118-1510915933:72318..72428Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1575043694:72318..72428TCONS_00010869-exon-sc0000118-1575043694:72318..72428Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1491911889:72828..72941TCONS_00010869-exon-sc0000118-1491911889:72828..72941Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1510915933:72828..72941TCONS_00010869-exon-sc0000118-1510915933:72828..72941Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1575043694:72828..72941TCONS_00010869-exon-sc0000118-1575043694:72828..72941Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1491911889:73274..74995TCONS_00010869-exon-sc0000118-1491911889:73274..74995Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1510915933:73274..74995TCONS_00010869-exon-sc0000118-1510915933:73274..74995Clytia hemisphaericaexon
TCONS_00010869-exon-sc0000118-1575043694:73274..74995TCONS_00010869-exon-sc0000118-1575043694:73274..74995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:65468..74995 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.075551	0.0402199	0.487334	0.670034	13.9684	15.0441	1.94133	1.56528	10.0711	6.59544	7.52354	4.54327	2.67336	6.76638	5.08627	5.06071	0.152756	0	1.95686	1.43627	0.331053	0.000100452	2.36307	4.46215	0	0	0.018414	0
Blast
[Close]
BLAST of TCONS_00010869 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 3.158e-28
Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 2 
Query:  224 CKYGPCLNGGVC---------------------TAHP-DKYYCSCLPGWIGTNCERR-NACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNV-LDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCE 655
            C +GPC NGG C                        P   + C CLPG+ G+ CE   + C P+PCH G  C   + GF+C+C  GF G  C   ++ C  +PC N  +C        C C  G+ G++CE        NPC NGG+C+  VD YYC CP    G +CE
Sbjct: 3806 CVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCE 3974

HSP 2 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 42/112 (37.50%), Postives = 54/112 (48.21%), Query Frame = 2 
Query:  224 CKYGPCLNGGVCTAHPDKYYCSCLPGWIGTNCERR-NACFPNPCHYGICSPNMDG-FTCTCKAGFKGNLC-NVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMES 550
            C   PC +GG C      + CSC  G+ G  CER  N C  +PC  G    N  G F C CK G+ G +C + +++C  NPC N G C        C C  G  G+ CE+ S
Sbjct: 3866 CLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELNS 3977
The following BLAST results are available for this feature:
BLAST of TCONS_00010869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT43.158e-2835.50Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
back to top