TCONS_00010871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010871
Unique NameTCONS_00010871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010871 ID=TCONS_00010871|Name=TCONS_00010871|organism=Clytia hemisphaerica|type=transcript|length=4574bp
CGGCTTCAAAGCGACACACGATCACGTCAAAACAACATAGAACAGTCACA
AAATACCATCCACTACGATCACAACATAACGACAAACGTTCCAAAACGCG
ACAACAAAAACACAAACACTTTACACGACATACAATCACTCATCCACAAC
AGGCACAACACGTGTCAACAAAAAAAGACAGTCTCACAACACACCAAAAA
ATCACTAAACCAACAAATTTCACCAAAGATGAAAACCATAAAAAAGCGGA
AGTCTTTTTACTGGATGCATCGAAAATTGATGAAGATGGGGTCGTCAGAG
GTCGAGACACAACCTCCAGTGCTGTCGGTAACATTATAGCTCCTGAAGAA
GATGTGTTAGCAAGtaagaaagaaaatatcaatAACCTTCTTACCAATGC
TGATGGTAAGAATCCAGAATCATTGGAGCAGAATCTGATGATGAACCAAG
ATTCAGCTAAAGGAAGCATTGTTCCGATGTCTGTATCCTTTGGTGGTTTC
AAATCACTCGACGATGCTGTGTTGCAATCGAATATACCAGCTGAAGTTGA
TTATCTGAAAGGGAGTTATAATGGGAACAAGGATTTCATGAAGAGCTTGC
AGACGCCAACAGATGGACCTGAAGAGCAAGCAGTTAGTCGACAATTAGCA
GGGGTCGAAGGACAGAAGACAGAATCGTTGTCCAAATTTATAGAGAGTAA
TGATCCACAGGGGGAATTATCAAAGATCGGTGATTCCTTGACGATGTCAA
AAATTGAACCAGGAGAGCTTCAAACTGGGGAATCTTCAAAGATTAGTGAT
TCCTTAACCACATCTAAACTTGATTCAGGTGACCCTTCAAAAATGATGGA
TTCTATTTTAGAACCAATCAAGACATCAGCGAAATATTCACCAACAAGTT
TTATGAATACAGAAACAGCCATTAAAGGTGACCCTGCCTTCTCACAAGCC
GTAACCCAAGACaatttactggacaactcagtCAAAGAAGCTATAAATgc
agaaatgaaaaaagatattgaTCTAGCCACGGGTGAAGAGAAACAAACGG
ATACACGTTCGTCTGCTTATGAATATAAACCCAAggaatcttctttttca
aatgtCAAGGAATTCCCTTCTTCTATGGTGGGTGATATCGCGACTGTAGC
GGAGGCGGTTGATAAAGCAGCCGTCAGTCGCTCACATAAAATGAAATATA
AGAAACAGCGCGAGAAAGTTGGGAAGTCCAAGAAACTAGTCAAACAGAGG
TCTTCGAATAAACATCATAAAACATCGACACGTTCGAAATCCTTACACTC
GCTGCCGACAGTTCCAAAAGTCAAAACAACAGCTCAACAAAAAGTAGAGG
AATCCCCGAAACAAATGACAGGGGAAGCACCATCTATAGAAGAGCAGCAT
GTGATTCCCCAATTATCCGATTCCCTGGACGTCAATACACATCCTTCGGC
ACTGACCGCGAGTGAACAGAATCTGATCGCGTCTATCGACCGCGCGGCCC
GAAAGAAGGACGTGGCGAACGAAATGGTTAACCGTATCATGATGCCGACT
AAAAGTGATCCTTTCTCAGACCAAGCTCTCACTCCACCTGAACAACTCCT
CGACATGCTCTCCAATGGAAAATTCAACGACCCCTTACCTGAAAGCGTAC
TCGACCGCTTATCCAATCTTGATCCGAACAAAGCTATGTTACCTGATTCA
AACGCTTTCATgcaaccaaaacaaaaaagccCTACTTCAGGTTTAATGCA
AGTTGGGTCTGAATTACTACCAGTCAAAAGCGTCGCTTTAAACCAGCCGC
AAGTTACACCACAACCGCTTCTAGACACAAGAGAGTTAGCGAGAGCTGAg
aaacaaatgaaaacaaaccCATATTACCTAGCCCAGAATAACATGCTGTT
AGACGCAAACAATTTCAAAAGCATGCAAGATCTTTCTAATATTGGAGAAG
CGATGTTTTCTAAGAACGTTATCGACTTAAAACAGCCGATGATGATGGGC
GGAAACGAATTGGCTGAGGGTGGTTTTAATGATAACACCCTTTCTTTCGG
GGCGTCATTAGGTGAACCGTCTTCCACAAGTAGCACGGCAGTTGCAAGAA
ACCAGATGAATAATAATAAAAACCTTCAATCGGTTACCGGTAAAACAAGA
TGTCCCAATTGCGTCACCGGTGGACAATATGGTAGCCAAGCTGCAGGATT
TTCTCCACAGCGTTTACTACACAAAGAATCCCACTTTGTACATAATGATA
TCGATCCTTTAGTGTTGGAGCAGATCCGACATCTACCGACAGTGAATATG
AAGAAATTGATAGAAACACACAGGAAGAAGACTGGACACAACAAACACAA
AGGGAAAACAACTTTCCAAGATGCAATGTCTGATACGAGTGTCTCACATA
ACACGGACGATGAATTCGTACCTGAGAAAATTGTCACTCTTCCTGAAGAG
CACGTCAATCACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGAATGG
AGGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTTGTTTGCCTG
GTTGGATCGGAACCAATTGTGAACGACGGAACGCGTGTTTTCCGAATCCA
TGTCATTACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGTG
CAAAGCTGGATTCAAAGGGAATCTCTGTAATGTACTGGATCATTGCCATC
CGAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGTA
CAATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAATGGAATC
AAAATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGAGAAT
TTGTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGTTAAT
TGTGAAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGAA
ACAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGTG
ACATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAATCCG
TATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAAA
CCCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAATG
AAGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGGT
GACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTAC
ATCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGATG
ACCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCAT
GAATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTGAATC
AGTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAATGATG
AAGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAATA
AAGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAAACGA
AAAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGATTTAC
CACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaacaaaa
caaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAGA
TGCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGCC
CGAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGACATG
TTAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTAA
AAGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCAC
AAGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGGA
CAAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacattttat
gCAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAACGCCA
AATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGGC
GCTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATGCTTA
TACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAATCCGG
GAAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTGT
CCGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGATG
TTGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAAA
AGCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTTGCCC
GATGAAGTCGAAGAAAACGTACAGACGACAAAACGACAACATAATAACGA
CAATGACGTCACTTTAACACGACAACCGACGGCGACAAATAACGAGACTT
TAAACGACAATTGTCGGAAATGTAACGAGAATGCAGACTGTGTACAGGGG
AGTGAACAGAAAGGTTGTGTCTGT
Run BLAST on NCBI

transcript from alignment at sc0000118:65887..75963+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010871 ID=TCONS_00010871|Name=TCONS_00010871|organism=Clytia hemisphaerica|type=transcript|length=10077bp|location=Sequence derived from alignment at sc0000118:65887..75963+ (Clytia hemisphaerica)
CGGCTTCAAAGCGACACACGATCACGTCAAAACAACATAGAACAGTCACA
AAATACCATCCACTACGATCACAACATAACGACAAACGTTCCAAAACGCG
ACAACAAAAACACAAACACTTTACACGACATACAATCACTCATCCACAAC
AGGCACAACACGTGTCAACAAAAAAAGACAGTCTCACAACACACCAAAAA
ATCACTAAACCAACAAATTTCACCAAAGATGAAAACCATAAAAAAGCGGA
AGTCTTTTTACTGGATGCATCGAAAATTGATGAAGATGGGGTCGTCAGAG
GTCGAGACACAACCTCCAGTGCTGTCGGTAACATTATAGCTCCTGAAGAA
GATGTGTTAGCAAGtaagaaagaaaatatcaatAACCTTCTTACCAATGC
TGATGGTAAGAATCCAGAATCATTGGAGCAGAATCTGATGATGAACCAAG
ATTCAGCTAAAGGAAGCATTGTTCCGATGTCTGTATCCTTTGGTGGTTTC
AAATCACTCGACGATGCTGTGTTGCAATCGAATATACCAGCTGAAGTTGA
TTATCTGAAAGGGAGTTATAATGGGAACAAGGATTTCATGAAGAGCTTGC
AGACGCCAACAGATGGACCTGAAGAGCAAGCAGTTAGTCGACAATTAGCA
GGGGTCGAAGGACAGAAGACAGAATCGTTGTCCAAATTTATAGAGAGTAA
TGATCCACAGGGGGAATTATCAAAGATCGGTGATTCCTTGACGATGTCAA
AAATTGAACCAGGAGAGCTTCAAACTGGGGAATCTTCAAAGATTAGTGAT
TCCTTAACCACATCTAAACTTGATTCAGGTGACCCTTCAAAAATGATGGA
TTCTATTTTAGAACCAATCAAGACATCAGCGAAATATTCACCAACAAGTT
TTATGAATACAGAAACAGCCATTAAAGGTGACCCTGCCTTCTCACAAGCC
GTAACCCAAGACaatttactggacaactcagtCAAAGAAGCTATAAATgc
agaaatgaaaaaagatattgaTCTAGCCACGGGTGAAGAGAAACAAACGG
ATACACGTTCGTCTGCTTATGAATATAAACCCAAggaatcttctttttca
aatgtCAAGGAATTCCCTTCTTCTATGGTGGGTGATATCGCGACTGTAGC
GGAGGCGGTTGATAAAGCAGCCGTCAGTCGCTCACATAAAATGAAATATA
AGAAACAGCGCGAGAAAGTTGGGAAGTCCAAGAAACTAGTCAAACAGAGG
TCTTCGAATAAACATCATAAAACATCGACACGTTCGAAATCCTTACACTC
GCTGCCGACAGTTCCAAAAGTCAAAACAACAGCTCAACAAAAAGTAGAGG
AATCCCCGAAACAAATGACAGGGGAAGCACCATCTATAGAAGAGCAGCAT
GTGATTCCCCAATTATCCGATTCCCTGGACGTCAATACACATCCTTCGGC
ACTGACCGCGAGTGAACAGAATCTGATCGCGTCTATCGACCGCGCGGCCC
GAAAGAAGGACGTGGCGAACGAAATGGTTAACCGTATCATGATGCCGACT
AAAAGTGATCCTTTCTCAGACCAAGCTCTCACTCCACCTGAACAACTCCT
CGACATGCTCTCCAATGGAAAATTCAACGACCCCTTACCTGAAAGCGTAC
TCGACCGCTTATCCAATCTTGATCCGAACAAAGCTATGTTACCTGATTCA
AACGCTTTCATgcaaccaaaacaaaaaagccCTACTTCAGGTTTAATGCA
AGTTGGGTCTGAATTACTACCAGTCAAAAGCGTCGCTTTAAACCAGCCGC
AAGTTACACCACAACCGCTTCTAGACACAAGAGAGTTAGCGAGAGCTGAg
aaacaaatgaaaacaaaccCATATTACCTAGCCCAGAATAACATGCTGTT
AGACGCAAACAATTTCAAAAGCATGCAAGATCTTTCTAATATTGGAGAAG
CGATGTTTTCTAAGAACGTTATCGACTTAAAACAGCCGATGATGATGGGC
GGAAACGAATTGGCTGAGGGTGGTTTTAATGATAACACCCTTTCTTTCGG
GGCGTCATTAGGTGAACCGTCTTCCACAAGTAGCACGGCAGTTGCAAGAA
ACCAGATGAATAATAATAAAAACCTTCAATCGGTTACCGGTAAAACAAGA
TGTCCCAATTGCGTCACCGGTGGACAATATGGTAGCCAAGCTGCAGGATT
TTCTCCACAGCGTTTACTACACAAAGAATCCCACTTTGTACATAATGATA
TCGATCCTTTAGTGTTGGAGCAGATCCGACATCTACCGACAGTGAATATG
AAGAAATTGATAGAAACACACAGGAAGAAGACTGGACACAACAAACACAA
AGGGAAAACAACTTTCCAAGATGCAATGTCTGATACGAGTGTCTCACATA
ACACGGACGATGAATTCGTACCTGAGAAAATTGTCACTCTTCCTGAAGAG
CACGTCAATCGTAAGTCGGTGTTCTTTAAGACCTATTCGCACTTTGATAC
AGTATAGAAAACGCCCTTGCCGCGCAGCCCTGGCTTACTATTCCCCATAA
GTAGTGAGTTAAAAAttcctatcgaaatcccaatagaatagggatagaaa
ttttattgttcccaGCTCAAAAAAcccaatggggatggttttggagtgca
attttttatatcaaaattttgaatggggataaAATGAAAGTCCATTTTCA
GTTGGCTGAAACtgtagggtatttttttcaaccggatatgaaattttggt
caatttttttagTTACCGGGTCTGTAACACAGAGAGGTGTGTTCGTAGCC
TCTCTAATCAGTAACCAGACCTTACAACATAACTGTGACTTTGACGCTGA
CGTTGACGGTATCGACCACGTctttaaataaaacaaaaatttcacatATT
CACAGTTTTCATATTATTAAACTAAAGaacgtttttcttttgaatggTAG
GAAAAAGTTTCCATAAAAAGTAGGCCCTTGTTAAACATATTTATTTCTGA
ATGCTACCTTTCGGCTAACCATTTTTGGTCCTCAATCACAAACAACTATC
CATACAGACTTTCGAACGTCACGTGATCTATTTTTAGCAATCTGATTCGT
CGAAAACTGTGACGTAACGTATGAAAATCCATCCCATCTCACTAGTCTGT
CCAGCCCGCCTCAATATAAACAGCACCTAATGGATTCTTTTGTTCCGATT
CTCAAAATACCAGCCCCTGCCCAACTGGCACAcgacgtcgtttcaacgtt
catttaacgttatatggacgttgtgaacgttagataaacgtctaaaaaac
gttgtgtgccagctgggtgacTATAAGCAAGAAATGTACCCATATGGCTA
TAGGcaatttcacagtcgcaaagcgtaatgggtaatcaggaccactgtgC
GCTAACGACGatttactattggtccaaagttttgaaatttttttaagatt
tttgcgtcCAGCCAACGGGAGGCCGTTAAAGATGCGCAaacagtcctgat
tacccatgatccatttcgactgtgaaatggcctataagCAAGAAATGTAC
CCATATGAACCATCACTgacttaaaaaaactttattctcTTTGTTCACAG
ACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGAATGGAGGTGTTTGT
ACAGCGCATCCAGATAAATATTATTGCAGTTGTTTGCCTGGTTGGATCGG
AACCAATTGTGAACGTAAGAAGCTCATTTGATGAAATAAATTTGTTCTTA
GTATGCAATCTCTTAATCACTAGAATCTGATGGGTTCTTGAGATTGCAAT
CTTCTCCATATTTGCACNGCTTAGTATGTAGTCTCTTAATCACTAGAATC
TGATGGGTTCTTGAGATTACAATCTTCTCCATATTTGCACGATTCATTTA
TATTATATTTGCTTATTCCCGAGGTATCATAGAAAATCTTTCTAGCTAGC
AACTATTGATTCAATTTCTGAATTAATTCACTtgtggtgtaaatgcatcg
agatcGCTGGAGGATAGAAAGCCCATGTTCCGAATCACGAGACCCTAGGT
TTGGCTCCCACTACATAATAGTCTAGAACATTTCACATTCTCTTAAAGGA
CGGAACGCGTGTTTTCCGAATCCATGTCATTACGGAATTTGTTCACCGAA
TATGGACGGGTTCACATGCACGTGCAAAGCTGGATTCAAAGGGAATCTCT
GTAATGGTGAgttctttttttctgttttacgTTTTGACGATCACGTGGAA
CATTCATTTTCTCGGCCGAATACCTAATTACACGAATCTTACTAGTCAAG
TATTCAACGGCTTtaaaattaacacgcaaaaaaacaacacgaattttatt
tgctttttcaaggacaccacagctggttttaattaaaggGGTTTTAAATA
ACACGAAATTTCTTAATTCGTGTTAATTACATGTCTACTtattttcgtgt
aataaggtaactTTAGAGTTTCATTTCATGAGCAAATTTTCTCAGTCAAA
ACGTTCTCTTTTCAAATTTGGGAATAGAGTTGAACTGTCTTTGACAAGTT
ATTTTATTGGCTAATAGTGATTTTTGATCATGTTTTGTTTAGTTACGTAA
TAATAATTACATATATAACATAACATATATAACATGAAAGACCTCTATTT
TCACGGCAAATAACTTCCAAGCTTGAATTCCATCACACCAGCtaatcttt
taaaatgtttaataACCTGATGGATCAGGTCGGGTTATCGTGGTACATTG
GTATAACCCGGGCAGTGAAATCCACTGTCCTGCTTCTTACCCAAACTAGA
ATTATGCAACACCCATCCACTGTCCCGTTTCGTACTCAAACTAGAATTAT
ACCACACCCGTCCACTGTGGATGGGCGTAGTgctgttccaattttttttg
cgaagcgggacagtcaAGAAAAGTCGTTTTGGGTGCGATGCGGGACAGTC
AGAAGTGACGGAGAATtgttttggtctgtaaaatttatgttGGGCACGAA
GTTGCTTTCAGTGTCCGGGTCATACCCATGTACCACGCTAACCCGACCTG
ATCACAACAGTCAAACTAACAAGTCACTGTTTTGCAAACTAAGATCAAAA
TAATAATTAGTGCAGTGAAAATAATTCCACTCAATCATTTCTTCCTACAG
TACTGGATCATTGCCATCCGAATCCATGCCATAACAACGGTTTGTGTACA
GAAACACAACATGGTGTACAATGTGAATGTTCACCTGGTTTCAAGGGAAG
GCTCTGTGAAAGTAAGTATCATCTTGTTCAATCCCTCTAATTTAGCCAAC
AACCAAGCGGTTACATTAAGACTCTCGCTGTAGCCAAGTTGAAACCGTAG
ATAAGTCGGGTCAAAAACTTAAAAGTAAGATCTGACCGTACTGAATATTT
TCAAGATTCCGATTTCCAACCTAATTTGGATTGTATTCGTTTGGATTNTT
GTACGTGCAAAGCTGGATTCAAAGGGAATCTCTGTAATGGTGAGTTCTTT
TTCTGTTTTACGTTTTGACGATCACGTGGAACATTCATTTTCTCGGCCGA
ATACCTAATTACACGAATCTTACTAGTCAAGTATTCAACGGTTTtaaaat
taacacgcaaaaaaacaacacgaattttatttgctttttcaaggacacca
cagctggttttaattaaaggGGTTTTAAATAACACGAAATTTCTTAATTC
GTGTTAATTACATGTCTACTtattttcgtgtaataaggtaactTTAGAGT
TTCATTTCATGAGCAAATTTTCTCAGTCAAAACGTTCTCTTTTCAAATTT
GGGAATAGAGTTGAACTGTCTTTGACAAGTTATTTTATTGGCTAATAGTG
ATTTTTGATCATGTTTTGTTTAGTTACGTAATAATAATTACATATATAAC
ATAACATATATAACATGAAAGACCTCTATTTTCACGGCAAATAACTTCCA
AGCTTGAATTCCATCACACCAGCtaatcttttaaaatgtttaataACCTG
ATGGATCAGGTCGGGTTATCGTGGTACATTGGTATAACCCGGGCAGTGAA
ATCCACTGTCCTGCTTCTTACCCAAACTAGAATTATGCAACACCCATCCA
CTGTCCCGTTTCGTACTCAAACTAGAATTATACCACACCCGTCCACTGTG
GATGGGCGTAGTgctgttccaattttttttgcgaagcgggacagtcaAGA
AAAGTCGTTTTGGGTGCGATGCGGGACAGTCAGAAGTGACGGAGAATtgt
tttggtctgtaaaatttatgttGGGCACGAAGTTGCTTTCAGTGTCCGGG
TCATACCCATGTACCACGCTAACCCGACCTGATCACAACAGTCAAACTAA
CAAGTCACTGTTTTGCAAACTAAGATCAAAATAATAATTAGTGCAGTGAA
AATAATTCCACTCAATCATTTCTTCCTACAGTACTGGATCATTGCCATCC
GAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGTAC
AATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAAGTAAGTAT
CATCTTGTTCAATCCCTCTAATTTAGCCAACAACCAAGCGGTTACATTAA
GACTCTCGCTGTAGCCAAGTTGAAACCGTAGATAAGTCGGGTCAAAAACT
TAAAAGTAAGATCTGACCGTACTGAATATTTTCAAGATTCCGATTTCCAA
CCTAATTTGGATTGTATtcgtttggatttttttttgaacGTATCGGCAAG
TATACAAGCTTAATCCTCTCTGGCGATCACACGCCAACTTTTTCGGACGG
CACTAAATcttagaaaagtcaaaaaagaatCGCATAATAGATCAGCTAAA
GATTAGATTTGGTGTTCACGTGCTCGTAGATAGGAAGTAACAAACCCTGA
CTCCGTTTAAGTCAACTCTTTTCTTTTACTAAACGTTTTAGTGGAATCAA
AATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGAGAATTT
GTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGTTAATTG
TGAAGGTTCGTATTAGAGGAATTACTTTACAAATAGTTTTTTGTAATTCC
AGAGCAAAGCTCAGTTTAAATGCAGTCACCCCAAGGTTTAAGAAGATATA
ATCAAAGCTAGTGGCAAAGCTAAAAGAAAATAGGAAGTGGTCTTTTTATG
ACCTCATCGCACGAAACCAAGAAAATCCAGAAACTACAATctaaaaaaga
cgaaaaaactaTGCACAAAAGTCACCAAATTAGTACAATCTAGTTGGAAT
GTAACTATTAGCATCtagtcaaaatacaaaatagcCAGTCTCAAAACAAA
ACTGCTCAACCAGTAACATTTCACCTTTTCCTCATAGATTACATCAGCCC
GACAAAGCCACCGCCTACCATTCCATTGAAACAAGTTGGTCCACAGGCTA
TTCCCGCCCCAATGAACGCCCCAAATAGTGACATCCGTGATGTTTTCACA
TACCGGTCTACGGATCAATACGGAAATCCGTATTCGGAAACCCACGAAGA
GATACGGAAAGGGCCGCAAGGGTTAGTAAACCCAGGCGCTAGTTTAGTTC
CGCATCCAGTTGCGCTTGCTGCAATGAATGAAGCTCCAGGTACCCATTTT
GTCGGAGCACCGAATCTTGCAGAACACGGTGACGTCATCATGCATTCATC
CCGGGAAGACGATAAAGCGGTTGTCAGTACATCAACAAGCGAAGACGAAA
TTAAAAATCTTCCGGAAAACATCAAAGATGACCGGTATCAAACACATTTC
GTAGAAGTTGATAAGGATAATGAAGGTCATGAATACAAACATAAATCATT
AAGTCATAACCATCTCCATGTGGGTGAATCAGTGGGCGTTGGTGAATACG
CCCAACAAAAACACGCCCCTAATAATGATGAAGAGGCGGGGAAAGTGATT
TCGGATGTAGAAAAACATCATGAAGAAATAAAGGAGAATTCGCATCAGCA
ACATGACCACGATGAACACATTTCAAACGAAAAACACGTCCCACAGAATG
TTTTTGTAGATCATTCATACCTCGATTTACCACACCACGCTCGTCAACAT
GAACAATCgagcaaaacgttcgaaacaaaacaaactatCGAGGCACAAGC
AAGCGAAAGATCAAAACTCGATCGACCAGATGCAGAAACATCAGAAATGA
GCAAACAGAATTTAAATCGAAATGGTAGCCCGAGTAGTGATGATGATAAT
AAAAGCAATATCAAAACAATAGGGGACATGTTAAAAATGTTTGACCAAGC
TACAAAAACTCTTTCTACAAAGATCATTAAAAGTGCTAATAAAGTCATGC
TCAGAGAGGGAAAAGCACCTTACATACCACAAGTAGAAAAGTCGGGAAAA
TCAAACAGCAATCATCAATCCCGATCGGGACAAATCGGGAACGCAACACA
ATCCCCGTTTTCAgaaatgaaacattttatgCAGAATTTATATAATTTAA
CCAATAAAATCACAAACATTAACAACGCCAAATCGGGTGTTGGGGCGTCG
ATGAAGGGCGTTAAGAAACACGCCCTAGGCGCTACTGACGATCTATACAA
ACATTTTACAGACCATCAGAAAAATGCTTATACAAGCTGGAGACGGCAAG
CATTGATCAACTACCATGCCCGTAATCCGGGAAAACCGGTTCCCCGCAAT
ACGGTCTCTTTGTCCGAGAATTCATTGTGTCCGAAATTCTGCAGGTTATT
TTGTGATCCGTGGTGCGTGAAGATTGGATGTTGTAAACTTTCACAGGAGA
AGTTGAACATTTATAAAGAGATAGAGGAAAAGCAAGAagcacatttaaaa
aatacgAAACCGTCTGGACTTTTGTTGCCCGATGAAGGTAGGAAGAAGGC
TTGAAATAGTGtatatataccctggacaaagtttCGCGATCacggtgaag
aaaaaaagtttttttaatgtggtaccctaatggtagcctAGATATCTAAG
CCAGTTTTCAGTCACTTGCTATAAAATATGAaagttaagttgtgactgaa
atACTGTTATTCAGCGCTAACTTAAATTTCACggatataaaaaaatcatt
aaagcacCGAAAACGCTATACATCTTTATACAGTATATCGCGCGCTGTAA
TATCTGGCTTCATTAATCAGGccaccctaatggtagcacttaTCAAAGTT
AGTGaacaattttaaacttttatttaaTTATAAACTGACCCACATCGAGT
Agcgctaccattagggtaccacttttaaaaaaacttcgatcaaagattgc
CGATATAGCTTGGTCAAAGTAATACTGACCTTAGTGGGTTTTCCATGTTT
tactaagttacgtaatttacacCATTACGGAAGCGTTCGAATATGCAGAG
GCGATAACTTgctttcataatggcggaaattacgtaacttaatgAAACAT
AGAAAACCTATAAAGTGAACAAATCTTCACAACCTCCGCGAGGCCGTTTT
CTAACGAAttggaaaaattacaaaaaagtattttaattTACCTCATTTTG
TTATGTAAATACGTCGTAATGAGAGAATTCTTCTGTCAATTATAACTTCC
AACATGCCTGAAAATATGAATTTATTATTGAAGTAACAACATTTAGGAAA
AAAACTTActacgttatatggacgttatgaacatttagataaacgttgaa
actaCGCTTCAACGCTTCAACGTGTCCATTTTTAATTATTGGCCAGAAGT
TcatggagttatcaaaacagtACAAAATATAAGTTGCTTGTTGGAAATTT
AgtccatttttgttttatttttcaatataatCCTTTATTATAATCTTAAT
ATATGATGAAAATTATGTcaacaaataaagaaaaaatcaaattttgaata
tattttacaGTCGAAGAAAACGTACAGACGACAAAACGACAACATAATAA
CGACAATGACGTCACTTTAACACGACAACCGACGGCGACAAATAACGAGA
CTTTAAACGACAATTGTCGGAAATGTAACGAGAATGCAGACTGTGTACAG
GGGAGTGAACAGAAAGGTTGTGTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006107XLOC_006107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010871-exon-sc0000118-1491911889:65887..68346TCONS_00010871-exon-sc0000118-1491911889:65887..68346Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:65887..68346TCONS_00010871-exon-sc0000118-1510915933:65887..68346Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:65887..68346TCONS_00010871-exon-sc0000118-1575043694:65887..68346Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:69487..69600TCONS_00010871-exon-sc0000118-1491911889:69487..69600Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:69487..69600TCONS_00010871-exon-sc0000118-1510915933:69487..69600Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:69487..69600TCONS_00010871-exon-sc0000118-1575043694:69487..69600Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:69985..70092TCONS_00010871-exon-sc0000118-1491911889:69985..70092Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:69985..70092TCONS_00010871-exon-sc0000118-1510915933:69985..70092Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:69985..70092TCONS_00010871-exon-sc0000118-1575043694:69985..70092Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:71037..71096TCONS_00010871-exon-sc0000118-1491911889:71037..71096Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:71037..71096TCONS_00010871-exon-sc0000118-1510915933:71037..71096Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:71037..71096TCONS_00010871-exon-sc0000118-1575043694:71037..71096Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:72378..72428TCONS_00010871-exon-sc0000118-1491911889:72378..72428Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:72378..72428TCONS_00010871-exon-sc0000118-1510915933:72378..72428Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:72378..72428TCONS_00010871-exon-sc0000118-1575043694:72378..72428Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:72828..72941TCONS_00010871-exon-sc0000118-1491911889:72828..72941Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:72828..72941TCONS_00010871-exon-sc0000118-1510915933:72828..72941Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:72828..72941TCONS_00010871-exon-sc0000118-1575043694:72828..72941Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:73274..74773TCONS_00010871-exon-sc0000118-1491911889:73274..74773Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:73274..74773TCONS_00010871-exon-sc0000118-1510915933:73274..74773Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:73274..74773TCONS_00010871-exon-sc0000118-1575043694:73274..74773Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1491911889:75797..75963TCONS_00010871-exon-sc0000118-1491911889:75797..75963Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1510915933:75797..75963TCONS_00010871-exon-sc0000118-1510915933:75797..75963Clytia hemisphaericaexon
TCONS_00010871-exon-sc0000118-1575043694:75797..75963TCONS_00010871-exon-sc0000118-1575043694:75797..75963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:65887..75963 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.158528	0	1.32307	2.66707	1.07387	0.82762	2.01361	0.620481	2.55197	3.02632	2.82357	8.66786	4.00269	3.78674	4.87693e-08	0	1.34329	1.81532	0.882735	1.31371	1.70513	3.14933	0.384664	0	0	0
Blast
[Close]
BLAST of TCONS_00010871 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.553e-25
Identity = 58/148 (39.19%), Postives = 75/148 (50.68%), Query Frame = 3 
Query: 2475 CKYGPCLNGGVCTAHP-DKYYCSCLPGWIGTNCE-RRNACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCED 2909
            C   PC NGGVC   P   YYC C   +IGT+CE   N C   PC YG  C  +  GF C C+  + G  C +  +C   PC N G C ++  G  C+C  GF+G  C+ +      NPCL+G  C      Y+C C   +RG +CED
Sbjct: 4017 CASNPCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNPCSSKPCLYGGTCVVDNGGFVCQCRGLYTGQRCQLSPYCKDEPCKNGGTCFDSLDGAVCQCDSGFRGERCQSDIDECSGNPCLHGALCENTHGSYHCNCSHEYRGRHCED 4164
The following BLAST results are available for this feature:
BLAST of TCONS_00010871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT11.553e-2539.19Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 S... [more]
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