TCONS_00010876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010876
Unique NameTCONS_00010876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010876 ID=TCONS_00010876|Name=TCONS_00010876|organism=Clytia hemisphaerica|type=transcript|length=2292bp
Ttaatttacacttttttttataagcatacgggaaaatcgggtcgaggctc
catatgcttagcaaaatctcagATTTTTTagccttaatttatgcttattt
atgCTTAGGCTTtgctttgttgattttctttgggttcgtaaaaatttcGA
ATTTTAAGTCGTAACATTGATTCGGCTCAAAGAATTacagttttttttgt
aatttggcgCCGCAGACGAAAATATTTGGtctaagaaaggtcaaacagct
ttaaaagtaaccctaaaaaggtcagcgttttattttaaaaaagttgCACA
AAgtgtttttgcatttcagcttaTATTAGAGGTATGCTTTGCATTATGCC
TATTTTTTACCgaatttgagcctaagtatgcttataaacgttatgcttat
aaaaaagtgcatTCTTTTGAAGGTGGTTTCCTCATAGTAGCACAAAAAGA
GTTTAGACATTTTAAGAAGAATTTGTAAGAAGGGATGATGTTATCAAACA
ATAGTGGAGGCAGTATTATTGACGATGATATATTTTGCGATGAATTCGAA
CCATCGACAACTTGCACCTATATATTCTCGGTGGTGTTGAGTTTGATTGC
TTTGATCGCATGCATCGGAAACTTGTTGACGATCATTGTGGTTATATTGG
ATCCTTTGAAATGTTTGAGATCTCCTTTCACATCATTCGTGGTCAATCTC
TCCATAGCTGATGCTCTTCAAGGAGCTATTGCCGTTCCATTTGTGGTTTA
TCATCTGTTAGATCATGAAAAAGGACTTCGGTTGACATCGAAAACAGTAC
ATTGTCTGACATGCATTTCCCTTCTCAGTGTTTTCTTCAGTACAGTCATC
ATCTCAGTTGACCGCTATATCGGTATCACGCGGCCGCTCAAGTATCGCGT
ACACTTGTCGCACGGTCGGTGTTTAAAAATCGCATCCGCAATATGGGTTA
TATCGATTGGATCAGGTTTTTTGATCACGTATCGGCCCTATGAAACGATA
TCGTTCATGGTTTACAATTATTTTATGCTTGTAACTGGCATTATTGTTAT
GTTTATAACTTTCGTTCTCATTTACCGATTCTTGAAACAAAACGAACGAC
AATTTTGCGAGAAACTACGAAGCGCATCGATAACATCGACGTCTTCTCGA
TACAATGCAGAAAAGCGAGTCACAATTGTTTTGTTAATCGTGTTATCGAT
TTTCATGGGAACGTATATTCCCGCACTCGTTATGTTGAATTTGTCGCAGT
ATTGTTTCGAATGTAGCTGTGAAACTCGATACGATTTATACGTTATAAGA
TACATTCTACTCGTCTCGAACAGCGCGATCAACCCGTTTGTTTATTCGAT
ACGAATGAAAGATTTTCGAAACTCGATTCAATCTTTATTTGTGAGGAAAA
CGAATCGAAAAACTCGATATCGATTGATAACCGATACATCATCAGACGGT
GTATCGAATTTGGAAAAATCGGCTGCTATGTGATTTAGATGAAAGGTTAC
AAATGCACGTAGAGTTGACTCCATGACCAAGAATTTgcttcgaattacag
aaagcattttatactaatttctagctgaaGGACCAATATCTTAGTTCGAA
TTATCGAAAGATTTGagtagtagaggttcgaattagagagagttgattgT
ATCAACCCTTAGCGGAGTGGTTGGTTTCAGGGACTGGTAACGAATTTACa
aggaaatgacgtcaaaattcttCGTTTTATGAGAATGTTAATACAATGAC
TTAATACATATTTTGATGTCATTCCTGGTAGACTTGAATTCAGTCTTATC
CATtatagatatcttatataaaacactagatagagctgctctgtatttcc
caagcaacggtaggtgaagcaaaataatccgccatctttgctgaaagtag
ctCACAATAGGTCACAGTTTGGTACCGGTACAATTTGTtcaaccaagcaa
aaaaaaccTGAATGGCGCGAGGCAACGAGGCGAAAAATAGGCTTGATcga
tcaaattgccggcaccgaactatggtctacttatcaaagatggcggatta
tttAGATTCAAATAGGGacggagtagctctatctagtgtcttatataaga
tatctgtgagtCTTATCACGTTTTAAAGGATGGTAGATATATACTGAAGA
CAAATACTGATGAGACACAGATGAAATgcacactttttttaaaagaatat
cttctataagaatatcagggtgaaaattggccaaatcgtaagaataccct
aagaattcCCTTtagggtgagtttcacagaatttgataagaa
Run BLAST on NCBI

protein sequence of TCONS_00010876-protein

>TCONS_00010876-protein ID=TCONS_00010876-protein|Name=TCONS_00010876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MMLSNNSGGSIIDDDIFCDEFEPSTTCTYIFSVVLSLIALIACIGNLLTI
IVVILDPLKCLRSPFTSFVVNLSIADALQGAIAVPFVVYHLLDHEKGLRL
TSKTVHCLTCISLLSVFFSTVIISVDRYIGITRPLKYRVHLSHGRCLKIA
SAIWVISIGSGFLITYRPYETISFMVYNYFMLVTGIIVMFITFVLIYRFL
KQNERQFCEKLRSASITSTSSRYNAEKRVTIVLLIVLSIFMGTYIPALVM
LNLSQYCFECSCETRYDLYVIRYILLVSNSAINPFVYSIRMKDFRNSIQS
LFVRKTNRKTRYRLITDTSSDGVSNLEKSAAM
Run BLAST on NCBI

transcript from alignment at sc0000118:80773..85257+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010876 ID=TCONS_00010876|Name=TCONS_00010876|organism=Clytia hemisphaerica|type=transcript|length=4485bp|location=Sequence derived from alignment at sc0000118:80773..85257+ (Clytia hemisphaerica)
Ttaatttacacttttttttataagcatacgggaaaatcgggtcgaggctc
catatgcttagcaaaatctcagATTTTTTagccttaatttatgcttattt
atgCTTAGGCTTtgctttgttgattttctttgggttcgtaaaaatttcGA
ATTTTAAGTCGTAACATTGATTCGGCTCAAAGAATTacagttttttttgt
aatttggcgCCGCAGACGAAAATATTTGGtctaagaaaggtcaaacagct
ttaaaagtaaccctaaaaaggtcagcgttttattttaaaaaagttgCACA
AAgtgtttttgcatttcagcttaTATTAGAGGTATGCTTTGCATTATGCC
TATTTTTTACCgaatttgagcctaagtatgcttataaacgttatgcttat
aaaaaagtgcatTCTTTTGAAGGTGGTTTCCTCATAGTAGCACAAAAAGA
GTTTAGACATTTTAAGAAGAATTTGTAAGAAGGGATGATGTTATCAAACA
ATAGTGGAGGCAGTATTATTGACGATGATATATTTTGCGATGAATTCGAA
CCATCGACAACTTGCACCTATATATTCTCGGTGGTGTTGAGTTTGATTGC
TTTGATCGCATGCATCGGTGAGTactttatttttcagattttgattTACA
CACAACATTTTGAATAGAAATTAGACAAGTTGGGACAAGACTTTACTCTC
AGGTGCccaataaagggggggggggggttggaaaatttgcCCTAATTGGA
TCTAATTGTCAAGCGGGGTTGTTGGAGATTGTACCTCTAAATACAACTCA
AAACAAGGTAATTAGAGACAAAATAGCAAGAGGGTATAATAAGGGCTTCt
tcttttgacagctgaaaatatttttaaaaaaatccttataataaggtcgg
ggggggggggttggaaaatttgcCCTAATTGGATCTAATTGTCAAGCGGG
GTTGTTGGAGATTGTACCTCTAAATACAACTCAAAACAAGGTAATTAGAG
ACAAAATAGCAAGAGGGTATAATAAGGGCTTCttcttttgacagctgaaa
atatttttaaaaaaatccttataataaggtcggggggggggggttggaaa
atttgcCCTAATTGGATCTAATTGTCAAGCGGGGTTGTTGGAGATTGTAC
CTCTAAATACAACTCAAAACAAGGTAATTAGAGACAAAATAGCAAGAGGG
TATAATAAGGGCTTCttcttttgacagctgaaaatatttttaaaaaaatc
cttataataaggtcggggggggggggttggaaaatttgcCCTAATTGGAT
CTAATTGTCAAGCGGGGTTGTTGGAGATTGTACCTCTAAATACAACTCAA
AACAAGGTAATTAGAGACAAAATAGCAAGAGGGTATAATAAGGGCTTCtt
cttttgacagctgaaaatatttttaaaaaaatccttataataaggtcggg
gggggggggttggaaaatttgcCCTAATTGGATCTAATTGTCAAGCGGGG
TTGTTGGAGATTGTACCTCTAAATACAACTCAAAACAAGGTAATTAGAGA
CAAAATAGCAAGAGGGTATAATAAGGGCTTCttcttttgacagctgaaaa
tatttttaaaaaaatccttataataaggtcggggggggggggttgagaAA
AACCGAAAATTTAACGGGGAGGGGCGTTAGGCACTTGAGGAGGGTAGCCA
CTTTTGATTCAACCTTGATTGAAGGTTTCCCTTTTTTACAAATACATCCT
GATTTTATATTATAGGAAACTTGTTGACGATCATTGTGGTTATATTGGAT
CCTTTGAAATGTTTGAGATCTCCTTTCACATCATTCGTGGTCAATCTCTC
CATAGCTGATGCTCTTCAAGGAGCTATTGCCGTTCCATTTGTGGTTTATC
ATCTGTTAGATCATGAAAAAGGTGTGTTTTCATTTTGGGATCTTATTACT
TCAAAGGTTACATTTGAGCTAACTTTTGATCCTtttatactttaggcgta
caaactttcgcggcagaaactttcgcgattttcgcgaattttggtccttt
ttttcgcgaaagtaaatgtcttaaaaaattctaggaaggaccattcgcga
aagtttatgctcgcgaaaaattcttgacaaaacagaaaatctgtaaaacc
tcaaactttgaataaaatgtaactgttacggcactttttagcctgctaaa
agactaataagtcaaatgacaaatgtttcaagccaatccaagaagtatct
gtccctctaagccattttttcatgtgaaaattatcaattttacgtcttga
ttcgcgaaagtttatgctcgcgaaaaagatttttttcgttaaattcgcga
aagtaaatgtcgtgaatttcgcgatttttcgtcctcgcgaaagtttctgt
tcgcgaaagtttgtacgcctaaagtaacaTGTAGATCAACTTCATTACGG
CAGAAAGTAATATCCCTATGGTCAGATAATTCTTATGACTCAGCCTAGGC
TgttggcatccactaacggattcttGCTCCAAAAATACTACCAtcggttt
tgtagaggtttgcgattcagactaggctCATGCATGAATTAATAAAAACT
GATGTTTAGCATAATAATCTCTAGTCTGAATACTATAAAGTCATACTAAA
TTTATACATACAAATTATGTATGACAAACAACCCTCTACGTCTACGTCCA
AGTCTAACTCTAAGCAGCGACAGCGATTGGGTATATTGGAATAACAACtg
actgatttttgccaatttctcaaaTGCAAGCCTAGTCCGCAGTAAAGTCT
CTGTGAACAAATTTTGAGTAACTTTCAgaaatcagaaaagctgttacATT
TTACCtaattaataattttctttttctttccttttgacAGGACTTCGGTT
GACATCGAAGNTGTTACATAATGTAATAATGtaattaatatttttcttta
tctttccTTTTGACAGGACTTCGGTTGACATCGAAAACAGTACATTGTCT
GACATGCATTTCCCTTCTCAGTGTTTTCTTCAGTACAGTCATCATCTCAG
TTGACCGCTATATCGGTATCACGCGGCCGCTCAAGTATCGCGTACACTTG
TCGCACGGTCGGTGTTTAAAAATCGCATCCGCAATATGGGTTATATCGAT
TGGATCAGGTTTTTTGATCACGTATCGGCCCTATGAAACGATATCGTTCA
TGGTTTACAATTATTTTATGCTTGTAACTGGCATTATTGTTATGTTTATA
ACTTTCGTTCTCATTTACCGATTCTTGAAACAAAACGAACGACAATTTTG
CGAGAAACTACGAAGCGCATCGATAACATCGACGTCTTCTCGATACAATG
CAGAAAAGCGAGTCACAATTGTTTTGTTAATCGTGTTATCGATTTTCATG
GGAACGTATATTCCCGCACTCGTTATGTTGAATTTGTCGCAGTATTGTTT
CGAATGTAGCTGTGAAACTCGATACGATTTATACGTTATAAGATACATTC
TACTCGTCTCGAACAGCGCGATCAACCCGTTTGTTTATTCGATACGAATG
AAAGATTTTCGAAACTCGATTCAATCTTTATTTGTGAGGAAAACGAATCG
AAAAACTCGATATCGATTGATAACCGATACATCATCAGACGGTGTATCGA
ATTTGGAAAAATCGGCTGCTATGTGATTTAGATGAAAGGTTACAAATGCA
CGTAGAGTTGACTCCATGACCAAGAATTTgcttcgaattacagaaagcat
tttatactaatttctagctgaaGGACCAATATCTTAGTTCGAATTATCGA
AAGATTTGagtagtagaggttcgaattagagagagttgattgTATCAACC
CTTAGCGGAGTGGTTGGTTTCAGGGACTGGTAACGAATTTACaaggaaat
gacgtcaaaattcttCGTTTTATGAGAATGTTAATACAATGACTTAATAC
ATATTTTGATGTCATTCCTGGTAGACTTGAATTCAGTCTTATCCATtata
gatatcttatataaaacactagatagagctgctctgtatttcccaagcaa
cggtaggtgaagcaaaataatccgccatctttgctgaaagtagctCACAA
TAGGTCACAGTTTGGTACCGGTACAATTTGTtcaaccaagcaaaaaaaac
cTGAATGGCGCGAGGCAACGAGGCGAAAAATAGGCTTGATcgatcaaatt
gccggcaccgaactatggtctacttatcaaagatggcggattatttAGAT
TCAAATAGGGacggagtagctctatctagtgtcttatataagatatctgt
gagtCTTATCACGTTTTAAAGGATGGTAGATATATACTGAAGACAAATAC
TGATGAGACACAGATGAAATgcacactttttttaaaagaatatcttctat
aagaatatcagggtgaaaattggccaaatcgtaagaataccctaagaatt
cCCTTtagggtgagtttcacagaatttgataagaa

Coding sequence (CDS) from alignment at sc0000118:80773..85257+

>TCONS_00010876 ID=TCONS_00010876|Name=TCONS_00010876|organism=Clytia hemisphaerica|type=CDS|length=3996bp|location=Sequence derived from alignment at sc0000118:80773..85257+ (Clytia hemisphaerica)
ATGATGTTATCAAACAATAGTGGAGGCAGTATTATTGACGATGATATATT
TTGCGATGAATTCGAACCATCGACAACTTGCACCTATATATTCTCGGTGG
TGTTGAGTTTGATTGCTTTGATCGCATGCATCGGAAACTTGTTGACGATC
ATTGTGGTTATATTGGATCCTTTGAAATGTTTGAGATCTCCTTTCACATC
ATTCGTGGTCAATCTCTCCATAGCTGATGCTCTTCAAGGAGCTATTGCCG
TTCCATTTGTGGTTTATCATCTGTTAGATCATGAAAAAGGACTTCGGTTG
ACATCGAAAACAGTACATTGTCTGACATGCATTTCCCTTCTCAGTGTTTT
CTTCAGTACAGTCATCATCTCAGTTGACCGCTATATCGGTATCACGCGGC
CGCTCAAGTATCGCGTACACTTGTCGCACGGTCGGTGTTTAAAAATCGCA
TCCGCAATATGGGTTATATCGATTGGATCAGGTTTTTTGATCACGTATCG
GCCCTATGAAACGATATCGTTCATGGTTTACAATTATTTTATGCTTGTAA
CTGGCATTATTGTTATGTTTATAACTTTCGTTCTCATTTACCGATTCTTG
AAACAAAACGAACGACAATTTTGCGAGAAACTACGAAGCGCATCGATAAC
ATCGACGTCTTCTCGATACAATGCAGAAAAGCGAGTCACAATTGTTTTGT
TAATCGTGTTATCGATTTTCATGGGAACGTATATTCCCGCACTCGTTATG
TTGAATTTGTCGCAGTATTGTTTCGAATGTAGCTGTGAAACTCGATACGA
TTTATACGTTATAAGATACATTCTACTCGTCTCGAACAGCGCGATCAACC
CGTTTGTTTATTCGATACGAATGAAAGATTTTCGAAACTCGATTCAATCT
TTATTTGTGAGGAAAACGAATCGAAAAACTCGATATCGATTGATAACCGA
TACATCATCAGACGGTGTATCGAATTTGGAAAAATCGGCTGCTATGTGAA
TGATGTTATCAAACAATAGTGGAGGCAGTATTATTGACGATGATATATTT
TGCGATGAATTCGAACCATCGACAACTTGCACCTATATATTCTCGGTGGT
GTTGAGTTTGATTGCTTTGATCGCATGCATCGGAAACTTGTTGACGATCA
TTGTGGTTATATTGGATCCTTTGAAATGTTTGAGATCTCCTTTCACATCA
TTCGTGGTCAATCTCTCCATAGCTGATGCTCTTCAAGGAGCTATTGCCGT
TCCATTTGTGGTTTATCATCTGTTAGATCATGAAAAAGGACTTCGGTTGA
CATCGAAAACAGTACATTGTCTGACATGCATTTCCCTTCTCAGTGTTTTC
TTCAGTACAGTCATCATCTCAGTTGACCGCTATATCGGTATCACGCGGCC
GCTCAAGTATCGCGTACACTTGTCGCACGGTCGGTGTTTAAAAATCGCAT
CCGCAATATGGGTTATATCGATTGGATCAGGTTTTTTGATCACGTATCGG
CCCTATGAAACGATATCGTTCATGGTTTACAATTATTTTATGCTTGTAAC
TGGCATTATTGTTATGTTTATAACTTTCGTTCTCATTTACCGATTCTTGA
AACAAAACGAACGACAATTTTGCGAGAAACTACGAAGCGCATCGATAACA
TCGACGTCTTCTCGATACAATGCAGAAAAGCGAGTCACAATTGTTTTGTT
AATCGTGTTATCGATTTTCATGGGAACGTATATTCCCGCACTCGTTATGT
TGAATTTGTCGCAGTATTGTTTCGAATGTAGCTGTGAAACTCGATACGAT
TTATACGTTATAAGATACATTCTACTCGTCTCGAACAGCGCGATCAACCC
GTTTGTTTATTCGATACGAATGAAAGATTTTCGAAACTCGATTCAATCTT
TATTTGTGAGGAAAACGAATCGAAAAACTCGATATCGATTGATAACCGAT
ACATCATCAGACGGTGTATCGAATTTGGAAAAATCGGCTGCTATGTGAAT
GATGTTATCAAACAATAGTGGAGGCAGTATTATTGACGATGATATATTTT
GCGATGAATTCGAACCATCGACAACTTGCACCTATATATTCTCGGTGGTG
TTGAGTTTGATTGCTTTGATCGCATGCATCGGAAACTTGTTGACGATCAT
TGTGGTTATATTGGATCCTTTGAAATGTTTGAGATCTCCTTTCACATCAT
TCGTGGTCAATCTCTCCATAGCTGATGCTCTTCAAGGAGCTATTGCCGTT
CCATTTGTGGTTTATCATCTGTTAGATCATGAAAAAGGACTTCGGTTGAC
ATCGAAAACAGTACATTGTCTGACATGCATTTCCCTTCTCAGTGTTTTCT
TCAGTACAGTCATCATCTCAGTTGACCGCTATATCGGTATCACGCGGCCG
CTCAAGTATCGCGTACACTTGTCGCACGGTCGGTGTTTAAAAATCGCATC
CGCAATATGGGTTATATCGATTGGATCAGGTTTTTTGATCACGTATCGGC
CCTATGAAACGATATCGTTCATGGTTTACAATTATTTTATGCTTGTAACT
GGCATTATTGTTATGTTTATAACTTTCGTTCTCATTTACCGATTCTTGAA
ACAAAACGAACGACAATTTTGCGAGAAACTACGAAGCGCATCGATAACAT
CGACGTCTTCTCGATACAATGCAGAAAAGCGAGTCACAATTGTTTTGTTA
ATCGTGTTATCGATTTTCATGGGAACGTATATTCCCGCACTCGTTATGTT
GAATTTGTCGCAGTATTGTTTCGAATGTAGCTGTGAAACTCGATACGATT
TATACGTTATAAGATACATTCTACTCGTCTCGAACAGCGCGATCAACCCG
TTTGTTTATTCGATACGAATGAAAGATTTTCGAAACTCGATTCAATCTTT
ATTTGTGAGGAAAACGAATCGAAAAACTCGATATCGATTGATAACCGATA
CATCATCAGACGGTGTATCGAATTTGGAAAAATCGGCTGCTATGTGAATG
ATGTTATCAAACAATAGTGGAGGCAGTATTATTGACGATGATATATTTTG
CGATGAATTCGAACCATCGACAACTTGCACCTATATATTCTCGGTGGTGT
TGAGTTTGATTGCTTTGATCGCATGCATCGGAAACTTGTTGACGATCATT
GTGGTTATATTGGATCCTTTGAAATGTTTGAGATCTCCTTTCACATCATT
CGTGGTCAATCTCTCCATAGCTGATGCTCTTCAAGGAGCTATTGCCGTTC
CATTTGTGGTTTATCATCTGTTAGATCATGAAAAAGGACTTCGGTTGACA
TCGAAAACAGTACATTGTCTGACATGCATTTCCCTTCTCAGTGTTTTCTT
CAGTACAGTCATCATCTCAGTTGACCGCTATATCGGTATCACGCGGCCGC
TCAAGTATCGCGTACACTTGTCGCACGGTCGGTGTTTAAAAATCGCATCC
GCAATATGGGTTATATCGATTGGATCAGGTTTTTTGATCACGTATCGGCC
CTATGAAACGATATCGTTCATGGTTTACAATTATTTTATGCTTGTAACTG
GCATTATTGTTATGTTTATAACTTTCGTTCTCATTTACCGATTCTTGAAA
CAAAACGAACGACAATTTTGCGAGAAACTACGAAGCGCATCGATAACATC
GACGTCTTCTCGATACAATGCAGAAAAGCGAGTCACAATTGTTTTGTTAA
TCGTGTTATCGATTTTCATGGGAACGTATATTCCCGCACTCGTTATGTTG
AATTTGTCGCAGTATTGTTTCGAATGTAGCTGTGAAACTCGATACGATTT
ATACGTTATAAGATACATTCTACTCGTCTCGAACAGCGCGATCAACCCGT
TTGTTTATTCGATACGAATGAAAGATTTTCGAAACTCGATTCAATCTTTA
TTTGTGAGGAAAACGAATCGAAAAACTCGATATCGATTGATAACCGATAC
ATCATCAGACGGTGTATCGAATTTGGAAAAATCGGCTGCTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006108XLOC_006108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010876-exon-sc0000118-1491911889:80773..81389TCONS_00010876-exon-sc0000118-1491911889:80773..81389Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1510915933:80773..81389TCONS_00010876-exon-sc0000118-1510915933:80773..81389Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1575043694:80773..81389TCONS_00010876-exon-sc0000118-1575043694:80773..81389Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1491911889:82538..82693TCONS_00010876-exon-sc0000118-1491911889:82538..82693Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1510915933:82538..82693TCONS_00010876-exon-sc0000118-1510915933:82538..82693Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1575043694:82538..82693TCONS_00010876-exon-sc0000118-1575043694:82538..82693Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1491911889:83663..83675TCONS_00010876-exon-sc0000118-1491911889:83663..83675Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1510915933:83663..83675TCONS_00010876-exon-sc0000118-1510915933:83663..83675Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1575043694:83663..83675TCONS_00010876-exon-sc0000118-1575043694:83663..83675Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1491911889:83752..85257TCONS_00010876-exon-sc0000118-1491911889:83752..85257Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1510915933:83752..85257TCONS_00010876-exon-sc0000118-1510915933:83752..85257Clytia hemisphaericaexon
TCONS_00010876-exon-sc0000118-1575043694:83752..85257TCONS_00010876-exon-sc0000118-1575043694:83752..85257Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010876-proteinTCONS_00010876-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:80773..85257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128054	0.0737533	0.477503	0.675952	0.167915	0.133316	0.210857	0.209353	0.117628	0.117074	0.228161	0.203196	0.951063	0.616712	0.510279	0.690247	0.456978	0.398219	0.601789	0.695387	0.355339	0.459787	0.31511	0.218232	3.23321	1.76525	0.262481	0.147934	0.178547	0.268954
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00010876 vs. Swiss-Prot (Human)
Match: AA2AR (Adenosine receptor A2a OS=Homo sapiens GN=ADORA2A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.163e-16
Identity = 83/334 (24.85%), Postives = 149/334 (44.61%), Query Frame = 2 
Query:  596 IALIACIGNLLTIIVVILDPLKCLRSPFTSFVVNLSIADALQGAIAVPFVVYHLLDHEKGLRLTSKTVHCLTCISLL-----------SVFFSTVIISVDRYIGITRPLKYRVHLSHGRCLKIASAIWVISIGSGF--LITY----RPYE---------------------TISFMVY-NYFMLVTGIIVMFITFVLIYRFLKQNERQFCEKLRSASITSTSSRYNAEKRVTIV--LLIVLSIFMGTYIPALVMLNLSQYCFECSCETRYDLYVIRYILLVSNSAINPFVYSIRMKDFRNS----IQSLFVRKTN----RKTRYRLITDTSSDG 1450
            IA++A +GN+L    V L+    L++    FVV+L+ AD   G +A+PF +            T  T  C  C   L           S  FS + I++DRYI I  PL+Y   ++  R   I +  WV+S   G   ++ +    +P E                      +++MVY N+F  V  ++ + +   +  R      RQ  +++ S  +    +R   +K V     L I++ +F   ++P  ++   + +C +CS    + +Y +  +L  +NS +NPF+Y+ R+++FR +    I+S  +R+        T  R++    SDG
Sbjct:   16 IAVLAILGNVLVCWAVWLN--SNLQNVTNYFVVSLAAADIAVGVLAIPFAI------------TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV--LVPLLLMLGVYLRIFLAARRQL-KQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMY-LAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAGTSARVLAAHGSDG 331
The following BLAST results are available for this feature:
BLAST of TCONS_00010876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AA2AR7.163e-1624.85Adenosine receptor A2a OS=Homo sapiens GN=ADORA2A ... [more]
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