TCONS_00010954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010954
Unique NameTCONS_00010954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010954 ID=TCONS_00010954|Name=TCONS_00010954|organism=Clytia hemisphaerica|type=transcript|length=1487bp
CAACTGCATTTTTAACTTCGATGAGACCAATTTTGCCAACAACATCAACA
CTGGGAAGGTGATTGTGAAGCGTGGTATGCGGCGAGTGGAGAAAGTTGTG
GACACCAGCAAACAAAACATATCCGTTATGTTTTGTGGTGACGCGGATGG
CAATTTCCTCCCCCCAATGGTGGTATATAAATCCAAATGGGTTTGGGACA
AATGGACGGAAGGCGGTCCTAGAGgaaCTGTTTATTCACACTCCGCAAAA
GGCTGGTTCGAGACCCGTACGTTCGGGCAATGGTTCAAGTTGGTCCTGCT
ACCACACTTGCAAAAATTACCACCCGGAAAAAAAGTCATCATTGGCGACA
ATCTAGGATGTCATTTTTCTGCTGAGGTCATTTCGCTATGTAAGGAAAAT
GCGATCAGTTTCTTACCTCTCGTGCCAAACTCTACCCATCTTTGCCAGCC
GTTGGATGTGGCAGTATTCAAGCCACTGAAGCAAGTTTGGAGCGGTGTGC
TAAGCAAGTGGCGCTCGGAGACAGGCATGAAAAAAGAAATCCCCAAGACA
TCGTTTCCCCTGCTGTTAAGGCGGACGTGCATGAACCTCACACCAAAGAA
CTTGAAGTCCGGATTTCGTACATGTGGTATCGCTCCTGTGAACAAggatg
aaatcctgaaaaaaatcCCCCCCGAGGAAAGAAATGTTACGGACGTTCTC
AACCAGGGGACGGTAGAACTCTTGAAAGAAATGTACCCGAAAAACACAAC
TCAGACACAGAAAAGAGGCCGTAAAGTCGAACCCGGCCGTAACGTGGCAG
ATATGAGCACGGACGAGGAAGACAGCGAAAGTGACACCGTGTTggaagag
gaagaagaagaggaagaagaagaagtaaCGGACTGGTCCGACGAAGAAAG
TGAAGACGAAGAACTGGACAATGAAGAGGATAATGAAGATCTTGGTGACC
GACATGACTATTTTATCACGACTGAACATCAGGAAGAGCTAGATGAGGAC
ATAGATTATGCTGTTGACTACGAGTTCGACGAGAACGTTTCACCTTATGA
GGAAGACGACGAAGACGACGAGCTGTCAGAGGGTGTTTGCACGGTGGAGA
TCAACAGGCCAAAACGACAAGAGCCATCGGCATGTCAAGTACACAACGAA
CAAaatgatgatgaagaagaagcAGAAGGACAATGGAATTGTTTCAAGTG
TAAAAAAGATTATGACGATGCCAATGAAGAAATATGGGTTGAATGCGAGT
TTCACAAATGTCGGAAACGCTTCCACGTGGAATGCAGCGGAATTCGTGGT
GGGCCCTACACCTGCGAAGAACAACTGAAAGATGTCAACTTCCGGTGTCG
ACATTGTCGTCGAatgaaatgatttattttcGGCCATCCATGCATTTGTA
TTTGTAAACTATTTTTTCGTTTGTCAATATTCGTCAATAATATCTTCATT
GCAAAGGAATCTTAAACGTTACAGACCTCTGTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00010954-protein

>TCONS_00010954-protein ID=TCONS_00010954-protein|Name=TCONS_00010954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
NCIFNFDETNFANNINTGKVIVKRGMRRVEKVVDTSKQNISVMFCGDADG
NFLPPMVVYKSKWVWDKWTEGGPRGTVYSHSAKGWFETRTFGQWFKLVLL
PHLQKLPPGKKVIIGDNLGCHFSAEVISLCKENAISFLPLVPNSTHLCQP
LDVAVFKPLKQVWSGVLSKWRSETGMKKEIPKTSFPLLLRRTCMNLTPKN
LKSGFRTCGIAPVNKDEILKKIPPEERNVTDVLNQGTVELLKEMYPKNTT
QTQKRGRKVEPGRNVADMSTDEEDSESDTVLEEEEEEEEEEVTDWSDEES
EDEELDNEEDNEDLGDRHDYFITTEHQEELDEDIDYAVDYEFDENVSPYE
EDDEDDELSEGVCTVEINRPKRQEPSACQVHNEQNDDEEEAEGQWNCFKC
KKDYDDANEEIWVECEFHKCRKRFHVECSGIRGGPYTCEEQLKDVNFRCR
HCRRMK
Run BLAST on NCBI

transcript from alignment at sc0000119:146668..150081+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010954 ID=TCONS_00010954|Name=TCONS_00010954|organism=Clytia hemisphaerica|type=transcript|length=3414bp|location=Sequence derived from alignment at sc0000119:146668..150081+ (Clytia hemisphaerica)
CAACTGCATTTTTAACTTCGATGAGACCAATTTTGCCAACAACATCAACA
CTGGGAAGGTATATGTCCAAATTAcgtgtatttttttattttgatagcgA
AACTGTGCGCAATGGAGGGGTAGCACAAGCCTGCTTACACTGAATATGGC
TAGATCATAAGTTCATTATTTTAAACGTTGCCAAAAATGTATGTTTATCC
AAGCGAAGAGAcgttttttctaaatttgtttgatttcaATAGGGTTTTAA
CACCGAGCTTTATATGGACCCTAGTGAGGCAGTAATTATTTTGGTCAACT
GCAAAGTCTTTTATCAGATTTTCTATAAGCGTGGTGCTCTAAGCACTACT
GAATACCGTTGTAGATGCAATTTAAGCACTAGGTCaggtttttcttgaat
aattGTGATGACATTGCGCCCGTTGACGTAAATTTTGACAATGGCATTGC
TTTTTCCTGTGGATACAACTTGAAATATAAGCCACTTACGGTGAATCTCG
TGGTTGAATATGGGTTAATAACTTGAGGCCCTCTCTTTATATTGTAAGGT
GATTGTGAAGCGTGGTATGCGGCGAGTGGAGAAAGTTGTGGACACCAGCA
AACAAAACATATCCGTTATGTTTTGTGGTGACGCGGATGGCAATTTCCTC
CCCCCAATGGTGGTATATAAATCCAAATGGGTTTGGGACAAATGGACGGA
AGGCGGTCCTAGAGGTGAGATATGCCATTTCTTGTAATTAGCTCATTAAC
CTTGTCGCTTTTGCATTGTACTGATAGACAGAAGGTATTACCATTGTGTT
GCTCTAATGGTAAAGTCGGACATTTTTCCACCCGTTTGTTCGGAGGTTAG
GCAGAATTTCCGGAAATGTAACCCTTTTTAGACGTACTTGAACAGGCTAG
GGGCACAACCTACATGTTTGATGAGagaacttttttatatttttaggaaC
TGTTTATTCACACTCCGCAAAAGGCTGGTTCGAGACCCGTACGTTCGGGC
AATGGTTCAAGTTGGTCCTGCTACCACACTTGCAAAAATTACCACCCGGA
AAAAAAGTCATCATTGGCGACAATCTAGGATGTCATTTTTCTGCTGAGGT
GTGTTATATTTGTGCGACACAAAACAAATCGGTTTTTTACTAAACTTTTC
GCAATAAAACATGCTTGAAAGTGTCTCCGCTGAAAGTTTACATATCCACA
CAATTTCTTAACCCGACAGCAGTGAGCGTCATATAATAGCTATCTATCTT
CTCTTAAACACAGGTCATTTCGCTATGTAAGGAAAATGCGATCAGTTTCT
TACCTCTCGTGCCAAACTCTACCCATCTTTGCCAGCCGTTGGATGTGGCA
GTATTCAAGCCACTGAAGCAAGTTTGGAGCGGTGTGCTAAGCAAGTGGCG
CTCGGAGACAGGCATGAAAAAAGAAATCCCCAAGACATCGTTTCCCCTGC
TGTTAAGGCGGACGTGCATGAACCTCACACCAAAGAACTTGAAGTCCGGT
ACGTTTTTTTACCACCATTCGCTTTGTTTACCACAAAGTGGGAGACATAA
GGAGTATGTTGCCATCAATATTCGCTTTATGGGTAGGACATGTTTGCCCG
TGATATAAAAGCATTTCTCCCTCAATTGAAAGATAATCCTTTTGATAAGA
AAAGTTTCCCAAATTCGAAGAAAGAAAACAATGACGGTCGGCTTTCAAAA
CAGGGGTTTAAAAGTGAATAGTTGGGCTATTTACCAAAGCATTAAACTAA
TAGCTAGCTATTCTTTATAATTTTTAGGATTTCGTACATGTGGTATCGCT
CCTGTGAACAAggatgaaatcctgaaaaaaatcCCCCCCGAGGAAAGAAA
TGTTACGGACGTTCTCAACCAGGGGACGGTAGAACTCTTGAAAGAAATGT
ACCCGAAAAACACAAGTAAGGCCACGttatttaaaaagaacaatTCTGTG
TGCTTGAGTATACATAGAATCGATTCTAAagtataccttaagtggataaa
ttttgacGTTCATTTAATTTGGCGACTGGACAAAATGCGattttttggcg
gggatttaatttggtgaattttgttaaaattcgccaaatttccCTATTTT
AATTCCCTCTAAAATTTATCCATTTGTGGTAATTATCGGTGAATTTAGTT
TCCCAATATACCAATTATATATAATTGAAATATTACATTTCACAGCTCAG
ACACAGAAAAGAGGCCGTAAAGTCGAACCCGGCCGTAACGTGGCAGATAT
GAGCACGGACGAGGAAGACAGCGAAAGTGACACCGTGTTggaagaggaag
aagaagaggaagaagaagaagtaaCGGACTGGTCCGACGAAGAAAGTGAA
GACGAAGAACTGGACAATGAAGAGGATAATGAAGATCTTGGTGACCGACA
TGACTATTTTATCACGACTGAACATCAGGAAGAGCTAGATGAGGACATAG
TAAGTGACATTCACTGCGGTATATAACTATAACCATTTGGGGCTATTTTT
ATCATGTCACCCTACATTTGCGAGGATATCGGAAGACCATAGGGATTATT
CGACAATATCTTATTTATATAACCTCTATTATCAAATGGGTATGCGATTA
GGCCGTCCCGGCCATCTTTGGAAAAGGACATAAAATGACACGCATGGTTG
TGTACAAGTTTTAACCTCGATAATTTGCCCTTAAAGGATTATGCTGTTGA
CTACGAGTTCGACGAGAACGTTTCACCTTATGAGGAAGACGACGAAGACG
ACGAGCTGTCAGAGGGTGTTTGCACGGTGGAGATCAACAGGCCAAAACGA
CAAGAGCCATCGGCATGTCAAGTACACAACGAACAAaatgatgatgaaga
agaagcAGAAGGACAATGGAATTGTTTCAAGTGTAAAAAAGATTATGACG
ATGCCAATGAAGAAATGTAAGACTTTTTAATAGCATCTGCCGGTATATAT
TACATTCTTGATTGCCGTTGGAAGCATAGCAACATAGAACCAAAGGAAAT
TAGTCTCAGTTTTTAACACAAGACGACACAAGATTGGCTAAATAAGTTAC
TCATATCATGCTAAGGCTTACTCGTGGCCAGTGAAAAGCTCATAGGCACC
AAAATAAGATCTAACATGTTAGCCTGAGTTTACAAGAGAAAAGTTATCGT
TATTTCATAGATGGGTTGAATGCGAGTTTCACAAATGTCGGAAACGCTTC
CACGTGGAATGCAGCGGAATTCGTGGTGGGCCCTACACCTGCGAAGAACA
ACTGAAAGATGTCAACTTCCGGTGTCGACATTGTCGTCGAatgaaatgat
ttattttcGGCCATCCATGCATTTGTATTTGTAAACTATTTTTTCGTTTG
TCAATATTCGTCAATAATATCTTCATTGCAAAGGAATCTTAAACGTTACA
GACCTCTGTTTTTC

Coding sequence (CDS) from alignment at sc0000119:146668..150081+

>TCONS_00010954 ID=TCONS_00010954|Name=TCONS_00010954|organism=Clytia hemisphaerica|type=CDS|length=1371bp|location=Sequence derived from alignment at sc0000119:146668..150081+ (Clytia hemisphaerica)
AACTGCATTTTTAACTTCGATGAGACCAATTTTGCCAACAACATCAACAC
TGGGAAGGTGATTGTGAAGCGTGGTATGCGGCGAGTGGAGAAAGTTGTGG
ACACCAGCAAACAAAACATATCCGTTATGTTTTGTGGTGACGCGGATGGC
AATTTCCTCCCCCCAATGGTGGTATATAAATCCAAATGGGTTTGGGACAA
ATGGACGGAAGGCGGTCCTAGAGgaaCTGTTTATTCACACTCCGCAAAAG
GCTGGTTCGAGACCCGTACGTTCGGGCAATGGTTCAAGTTGGTCCTGCTA
CCACACTTGCAAAAATTACCACCCGGAAAAAAAGTCATCATTGGCGACAA
TCTAGGATGTCATTTTTCTGCTGAGGTCATTTCGCTATGTAAGGAAAATG
CGATCAGTTTCTTACCTCTCGTGCCAAACTCTACCCATCTTTGCCAGCCG
TTGGATGTGGCAGTATTCAAGCCACTGAAGCAAGTTTGGAGCGGTGTGCT
AAGCAAGTGGCGCTCGGAGACAGGCATGAAAAAAGAAATCCCCAAGACAT
CGTTTCCCCTGCTGTTAAGGCGGACGTGCATGAACCTCACACCAAAGAAC
TTGAAGTCCGGATTTCGTACATGTGGTATCGCTCCTGTGAACAAggatga
aatcctgaaaaaaatcCCCCCCGAGGAAAGAAATGTTACGGACGTTCTCA
ACCAGGGGACGGTAGAACTCTTGAAAGAAATGTACCCGAAAAACACAACT
CAGACACAGAAAAGAGGCCGTAAAGTCGAACCCGGCCGTAACGTGGCAGA
TATGAGCACGGACGAGGAAGACAGCGAAAGTGACACCGTGTTggaagagg
aagaagaagaggaagaagaagaagtaaCGGACTGGTCCGACGAAGAAAGT
GAAGACGAAGAACTGGACAATGAAGAGGATAATGAAGATCTTGGTGACCG
ACATGACTATTTTATCACGACTGAACATCAGGAAGAGCTAGATGAGGACA
TAGATTATGCTGTTGACTACGAGTTCGACGAGAACGTTTCACCTTATGAG
GAAGACGACGAAGACGACGAGCTGTCAGAGGGTGTTTGCACGGTGGAGAT
CAACAGGCCAAAACGACAAGAGCCATCGGCATGTCAAGTACACAACGAAC
AAaatgatgatgaagaagaagcAGAAGGACAATGGAATTGTTTCAAGTGT
AAAAAAGATTATGACGATGCCAATGAAGAAATATGGGTTGAATGCGAGTT
TCACAAATGTCGGAAACGCTTCCACGTGGAATGCAGCGGAATTCGTGGTG
GGCCCTACACCTGCGAAGAACAACTGAAAGATGTCAACTTCCGGTGTCGA
CATTGTCGTCGAatgaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006157XLOC_006157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010954-exon-sc0000119-1491911889:146668..146725TCONS_00010954-exon-sc0000119-1491911889:146668..146725Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:146668..146725TCONS_00010954-exon-sc0000119-1510915933:146668..146725Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:146668..146725TCONS_00010954-exon-sc0000119-1575043694:146668..146725Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:147216..147381TCONS_00010954-exon-sc0000119-1491911889:147216..147381Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:147216..147381TCONS_00010954-exon-sc0000119-1510915933:147216..147381Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:147216..147381TCONS_00010954-exon-sc0000119-1575043694:147216..147381Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:147614..147765TCONS_00010954-exon-sc0000119-1491911889:147614..147765Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:147614..147765TCONS_00010954-exon-sc0000119-1510915933:147614..147765Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:147614..147765TCONS_00010954-exon-sc0000119-1575043694:147614..147765Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:147931..148165TCONS_00010954-exon-sc0000119-1491911889:147931..148165Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:147931..148165TCONS_00010954-exon-sc0000119-1510915933:147931..148165Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:147931..148165TCONS_00010954-exon-sc0000119-1575043694:147931..148165Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:148445..148582TCONS_00010954-exon-sc0000119-1491911889:148445..148582Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:148445..148582TCONS_00010954-exon-sc0000119-1510915933:148445..148582Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:148445..148582TCONS_00010954-exon-sc0000119-1575043694:148445..148582Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:148863..149116TCONS_00010954-exon-sc0000119-1491911889:148863..149116Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:148863..149116TCONS_00010954-exon-sc0000119-1510915933:148863..149116Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:148863..149116TCONS_00010954-exon-sc0000119-1575043694:148863..149116Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:149354..149583TCONS_00010954-exon-sc0000119-1491911889:149354..149583Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:149354..149583TCONS_00010954-exon-sc0000119-1510915933:149354..149583Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:149354..149583TCONS_00010954-exon-sc0000119-1575043694:149354..149583Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1491911889:149828..150081TCONS_00010954-exon-sc0000119-1491911889:149828..150081Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1510915933:149828..150081TCONS_00010954-exon-sc0000119-1510915933:149828..150081Clytia hemisphaericaexon
TCONS_00010954-exon-sc0000119-1575043694:149828..150081TCONS_00010954-exon-sc0000119-1575043694:149828..150081Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010954-proteinTCONS_00010954-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:146668..150081 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138802	0.216566	0.0628634	0.092253	0.338766	0.0817163	0.134278	0.167064	0.350897	0.433424	0.759374	0.462206	0.166163	0.134215	0.0315265	0.0526264	0	0	0.0590198	0.03088	0.0268403	0	0.197462	0.0868129	0.596101	0.638408	0	0.040624	0.0359566	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR004875DDE_SF_endonuclease_dom
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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