TCONS_00011010 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011010
Unique Name	TCONS_00011010
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2717

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000119:424658..431670+
coding sequence from alignment at sc0000119:424658..431670+

transcript sequence

>TCONS_00011010 ID=TCONS_00011010|Name=TCONS_00011010|organism=Clytia hemisphaerica|type=transcript|length=2717bp
GAAAAAACTCTATTTGTTTTAGGATAATAGATAGAAAAATTGTTAGCGCA
TGGCTATTCGTCAGCGTAAAGGAAAGGAGAATTCCTCCCCTCCTTCAGGA
ACTTCTCAAACTTCTCAAACCTCATCCAAAAAGAAATCTGGCAAGAATAA
AACGCATCAATTTGCTATCATCTTTGGAAGTGTGGTATTTGCAGTTGTGG
CAAGCTATGTATGGAGCTATATGAAAACCATTCGTGCTTACACACCGTTG
AACGCACCCAAAGCTGTTGAATTAATCAGAGATCATAATGATGACTTACA
CAGACTCTGGGGCACCTACAGATCGCATCTTTATTTTGGTGTACGCGCAC
GGGCGCCAGATTCATTGCTATTCGGCTTGCTTTGGTTCGCTCAATATCCT
CAGGATGGACAACTAAAAGTCAGgtattcatgCGAGCAAGGTGACAACCT
GCCGAAATACGGTTGGCTACAACACGACGGCTCAACTTACGGTGCGCAAG
AGATTGTAGATGAAGACTTCATTCTAACCACTGAGTACATCAAACGTCCT
AATCATGGATCGAAAGGTGGTGATTGGACGGCAAGAGTTAAAGGGAAATC
AAGAAACGGTGATAAGAAGTCCATACAAGCAGTGTCGTTGATGTTTGCTG
TGTCGAACGAAGGAGCGGGAAAGCTCACCAGGATTGTGAATGGTGAGAGA
ATGGCTGAGATCAGAGGTCGATCACCACTCCTTGGTGAATTCAAGTTGAA
GTTCCGCAATCCAGCTGGTTCAGTGAAACTCAACAGTTATTTGACAACAC
ACACTGACGATATTTACAACCCAAAAGATACAATTATGAAGAAACTCCAT
TataaaacaaaaccaaaaagtCGTGATCAAACACCGTTAATCGGATTACC
GGGTGACGTTCCAAACCCGAACGGGAAACCGAATAATTTGTTTGTGCACC
AAGTCACATTGCAATTACCGTTTCAGATCGATGCCGTGTTTGAATCAGAG
GACGGCGATAATGACCGGAAAGAGTCATTAGCCGGTGACGTCTTCGCTCG
TGAAGTCAAACAAAAACGGAAAGATTTTAACGAACATTTTGAAAACACTT
TCCAACTCTCTGAGAAAGGTTTTACTGACGAACAAATCAGTTTCGCGAAG
GCAGCTTTCAGTAATTGCATCGGTGGAATAACATATCTTCATGGGAAATC
TAAAGTCACGTCACGGCGTTTGAAGGAACCTGTTGATTACTGGGAGACTG
GGCTCTACACAGGGGTGCCTTCGCGATCCTTCTTTCCGCGTGGTTTTTTA
TGGGACGAAGGCTTCCATCAAATCATGATACAAAAATGGGATGCTGGTAT
CACAAGACAGATTCTTTCACACTGGCTTGATCTTCTCAATCAAGATGGTT
GGATCCCGCGCGAACAAATCCTTGGAATCGAAGCCCGCCGTAAAGTACCG
GACGAATTTGTGGTTCAACATAATGAGAACGCCAACCCGCCCACTTTCTT
TATCACCATAGAAACACTGATTCGAACGGAGAAAGCGGAACATGGTCACG
TGACGCCAGAAACATTAAAGTTCCTTAaaagtgtattttacagactcgAT
CAATGGTACCAATGGTATAATAAAACGCAGACCGGACCTTTACCCGGCGC
CTATCGATGGCACGGGCGTGACGCGACCACAGATCGTGAATACAATCCTA
AAACTTTGACATCAGGTCTTGATGATTATCCCCGCGCGTCACACCCTTCG
GACGATGAACGCCATGTTGATTTAAGATGTTGGATTGCGTTAGCTTCAGG
TATTCTTGCGGATATTGCAGATATTGTTGGAATTAAAAGTACGAAATATC
GAGAAACTGAAAGCTATTTGAAAGACAATCGACTTTTAGATCAGATGCAT
TGGTCTGATAAACTGAAGACGTACGCTGATTATGGAAACCATACCAAGCT
TGTTAAGTTAGAATGGGTTCCTGTACGGTACGAACCGCACGCGCCCAAAC
GGTTGGCACGTGTCGTCAAATCAAAGAAAGGACCTTCCCCAAAATTCGTC
GATGAATTCGGATATGTATCCATGTTTCCTTTTCTATTAAAAATCTTGAA
ACCAGACTCGTCCAAATTACGAATTCTACTCGATGATATCCGCAGTCCTG
AGAAACTGTGGACACAGTACGGTTTAAGATCACTATCGCGCACCGCTCCC
TCGTATAATAAACACAACACGGAACACGACAAACCATACTGGAGAGGTCC
GATCTGGATCAACATCAATTTCCTTACCTGTAAAGCGCTCCATTATTACG
CGCACATTGAGGGGCCGCATCAAGGACACGCAAAGATGATCTATGAAGAA
TTACGTCATAATCTTGTTAATAATGTCTATAAACAGTACCAGAAAACAGG
ATACATATGGGAACAGTATGATGATAAAACGGGGAAAGGACAAGGCTGTT
ATCCGTTCACTGGATGGTCAGCTCTTATTAATCTCATAATGGCTGAAAAG
TATTAATGAATTCGTCCCATACTCTTGAATGAAACTttctattttagatt
ttttcttttaatttctagGTAATTTTTAAGTGACCAGTCTGGTtacattt
ttgacaattttataGGTAGAATTTTTCAACTAGGTTTATAATTCAAACAT
ACACAAAATATTAAAGCGAATTCAAATTATGTTCGCTGTCACTTGATCGC
ATTTTTCTGGCATTCcc

Run BLAST on NCBI

protein sequence of TCONS_00011010-protein

>TCONS_00011010-protein ID=TCONS_00011010-protein|Name=TCONS_00011010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=818bp
MAIRQRKGKENSSPPSGTSQTSQTSSKKKSGKNKTHQFAIIFGSVVFAVV
ASYVWSYMKTIRAYTPLNAPKAVELIRDHNDDLHRLWGTYRSHLYFGVRA
RAPDSLLFGLLWFAQYPQDGQLKVRYSCEQGDNLPKYGWLQHDGSTYGAQ
EIVDEDFILTTEYIKRPNHGSKGGDWTARVKGKSRNGDKKSIQAVSLMFA
VSNEGAGKLTRIVNGERMAEIRGRSPLLGEFKLKFRNPAGSVKLNSYLTT
HTDDIYNPKDTIMKKLHYKTKPKSRDQTPLIGLPGDVPNPNGKPNNLFVH
QVTLQLPFQIDAVFESEDGDNDRKESLAGDVFAREVKQKRKDFNEHFENT
FQLSEKGFTDEQISFAKAAFSNCIGGITYLHGKSKVTSRRLKEPVDYWET
GLYTGVPSRSFFPRGFLWDEGFHQIMIQKWDAGITRQILSHWLDLLNQDG
WIPREQILGIEARRKVPDEFVVQHNENANPPTFFITIETLIRTEKAEHGH
VTPETLKFLKSVFYRLDQWYQWYNKTQTGPLPGAYRWHGRDATTDREYNP
KTLTSGLDDYPRASHPSDDERHVDLRCWIALASGILADIADIVGIKSTKY
RETESYLKDNRLLDQMHWSDKLKTYADYGNHTKLVKLEWVPVRYEPHAPK
RLARVVKSKKGPSPKFVDEFGYVSMFPFLLKILKPDSSKLRILLDDIRSP
EKLWTQYGLRSLSRTAPSYNKHNTEHDKPYWRGPIWININFLTCKALHYY
AHIEGPHQGHAKMIYEELRHNLVNNVYKQYQKTGYIWEQYDDKTGKGQGC
YPFTGWSALINLIMAEKY

Run BLAST on NCBI

transcript from alignment at sc0000119:424658..431670+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011010 ID=TCONS_00011010|Name=TCONS_00011010|organism=Clytia hemisphaerica|type=transcript|length=7013bp|location=Sequence derived from alignment at sc0000119:424658..431670+ (Clytia hemisphaerica)
GAAAAAACTCTATTTGTTTTAGGATAATAGATAGAAAAATTGTTAGCGCA
TGGCTATTCGTCAGCGTAAAGGAAAGGAGAATTCCTCCCCTCCTTCAGGA
ACTTCTCAAACTTCTCAAACCTCATCCAAAAAGAAATCTGGCAAGAATAA
AACGCATCAATTTGCTATCATCTTTGGAAGTGTGGTATTTGCAGTTGTGG
CAAGCTATGTATGGAGCTATATGAAAACCATTCGTGCTTACACACCGTTG
AACGCACCCAAAGCTGTTGAATTAATCAGAGATCATAATGATGACTTACA
CAGACTCTGGGGCACCTACAGGTAGGCATTTTGCCTTTTCCATTCAATCT
ATACGGAAGAGATTAATATAATCAAATGATGAGATTTTTGGCCTGTCTAT
CTCTACTTTGGTAGGGCCAAACTTCTATTATCCTAAGTATGACTTCCAAA
ACCCTTGCCTACATATTAGTATTGTTCACTAAATCTTGATTCGTCAAACA
AAAATGGGTTCTTACCACAGTaattgaatttctattgttttccttgaatt
gattttgagaaatagattttgatgatttaCTCGTGATGTTTTACTGAGga
taatttgaaagaatttctcAAACCAAATGTCTCAAACTATATCTGGTTAC
CGTTTCAAAGCTTTTTAACGAACCAATCtttcgttgttgttatttttcat
tgctattttatttcaatgttcaGTCCAATTTTGTAAATTGTAATTTTCAT
AGACATTTTAAAATGAATTGACTGGAATCTAGGGATTGAAAGTGCAATAT
GGTACAAAGGCTTATGCCGGCCTCTTTTTGTAAGGCCTAGAACTCTAGAT
GGGGATGTGGGAAGAAAATTGCacagaaaaataatcaaataccaAGGTTC
GGGAAATATATGAATACATATGTGGAAAAAACTATAATTACCTAACTGAT
CACTAAATAGGGATCGTGCTAACTGTCCCTAGGTTGGGATTCGGGATATC
ACTAACACATTATCCAGATGTAGATTAATGGTAAACATGATCTGGATGTT
TGTTTTAACTAACtggtgaaattgaaatttcaacatCAAGAAAATGCNTG
GATGTTTGTTTTAACGAAGTagtgaaattgaaatttcaccATCAAGAAAT
TGCTAttcctgaattttcaaaataaagatcagtttGTGTTTCTGCTGAAA
ACATCATTCACGAATTAAATCCTGATTTATAGAAAGCTGGTAAAATAGTT
AAATGTATCATTCTGTGAGCATTGGTTCGATAGCTCTCATTCGTTCTGac
atgtacttgcgctacttttcaaatcccggcacttttgtcacaacagtgga
GCTGCACTAGAAAGCCAACTCAATGACCTCAAACCCGTGtcaccgatcca
ctgagcccttgcgacgcaagtccattgcgaacgaatgaggccgccctggc
gggacgcctcacctttagCGTTGTGTTGCACACTGATCGAATACATCCTT
ATGATGGTTTGCTTTACATACGACTCGAAcacttttgagtgaaaaatcac
ttgtggttttttcACGCGCATGCATAATAGAAGTTAGATTTCCCTaacct
gaaaataattttcccgAACTTAGGCTCTAATTTGTGacagtttaaaattt
ttgattgaattgtcttatttgaaggtttgaaaaataagttctgATTTAAT
TAATTGTTTAAAGGATACACTCAAATTAAAGAGTTCGGGAAATCGAATTT
TCCAATCTGGGAAATTTTATTTCCCTAATTCGAGAAATCACATTTCCCGA
TCCGGAAAAAGAATAGAATAAAGCAAGCAAGGTCACAATTCGTGATATTT
CCTATCCCtaaaggggaactcaacaaatttgacatttttatttttttact
gatttttggtaatattaagtataaaaatgagaaagaaagtatATAAGTCC
GATctctcaaataaaaatcatgaaaaatctctcttaacttcagttaaaaa
tatgttaaaaaaatcaccccctttcttttaaaaaaagatcgACTTCTCTt
ttgattatgacgtcactgcATTCAGAAAACAGAACAAATTCAGTTATGAT
TACAGTATGTTTTCAGAGTtctgttttaaataagaaataaatacatAGAA
AAGTATTCCTGGTAAATTGTGGGTGATTTAGCcgaataacaataaaaaat
ccaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGATGTAATCTATTTTTCACGAtgtgatttctaatt
tttcctaGTTTCTTTATGAATTAGATTACCAAACTTGTGAATTTGTATTT
TCGGATaggtttctttttttcatttagaaagaATTTTAGTGGTTGGTGTT
ATATTGTTTCCCTTCCTTGGTCAcaacttttacctatttcaaaaatttta
tgtttaTGATTTAGGTTTTGCCATAGAGGATTTTATTGATCCCGAATATG
CCAAACAGATTTGGGAAATGATTTCCAGAATGGTAAAAACAAATACCCAA
TGCTCCAAAGAATCCTAAGTTAACATTCCCTAATCCTAAAAGAAATGGGT
TGAAATTCCCaatctgttttcaattttcactagtttgggatttaaagatt
ttttcctgtgttggTGGTATTTAAGCTTCCTGGTTCATTCGTTTATTCCT
TCATTTCTGAATCAATTCATTCTTCGCTGTTTTTGTTTAATCATGcatca
attttttgttttaagacTTCACTTTTCTTATTTGAGTTTTGACTATTTGC
CTAGCGGAGGGTAGAACATGGACGTGAACATATTTCATTCTAAAAGTTTC
CAAATTTTATGTAGAATGGAAAAATTCGCTCGGAATGGATTTTGGACAAT
TATTGACATTTAACCATATAATCTCAACATTTATTATATTgagaaatcat
actaatctttCAGTGCTTACACTCTGTTACTATCTAAATCTCTCaattat
ttgaaaaagtactgGCATTAGCGcaaaaatgcttaaaatgagcatttttg
gtcaaaaaagggtcaaaacaaaAGTGTCCAGTGTCAAAATCTAATAATCT
CAACGAACTACCTGATAGTGGAAATATCAATATCAATGTAATCATTTATA
ACGTAATTTGGGCCTTTTGAGTCCAAGATTGGCCCATTCCGTGCTAACAT
GGAAATTCATattttgcacgtttttttataagaatagtgtttttttgTCT
GAGGGTAAGTATTATTCttattttctattgttctaaacaataggcatATT
GTTCTCTTAAATGTCACCCTTATATTCTTaaagaagttattcttatataa
GAAAGCGTgtatatcaaatttaaaaacaaacttttggtTTATAATATATC
CACAACTTTCTAATATATTGAAACTGCAAGCACTGTTGGTTTTTTGTGGG
TGAGTAGTGTTTGGGGATGAGAGGCTAAAGTTTCAAGAGTCAATTGTGAA
ATCatgtgattttctctttttctcagATCGCATCTTTATTTTGGTGTACG
CGCACGGGCGCCAGATTCATTGCTATTCGGCTTGCTTTGGTTCGCTCAAT
ATCCTCAGGATGGACAACTAAAAGTCAGGTGAGACAACACCCTTATTATT
CTACCATGAAATATTGATGCATAATAATATGATTTTACCTTACTAAAGCT
AGTTTCTTAGAGTTTTCTGTCGACAGAAAAATTTTATCGTCTAAATGTCT
CTAAGAATTTCGCTTatacttttcaggtattcatgCGAGCAAGGTGACAA
CCTGCCGAAATACGGTTGGCTACAACACGACGGCTCAACTTACGGTGCGC
AAGAGATTGTAGATGAAGACTTCATTCTAACCACTGAGTACATCAAACGT
CCTAATCATGGATCGAAAGGTGGTGATTGGACGGCAAGAGTTAAAGGGAA
ATCAAGAAACGGTGATGTAAGGAAATAGTGAATTCCCCTCGAAACAAAAA
ACTGTTTTGAACCTGATTTTGTTTTGTAGCACAAGGCTGTACTTTTTGAT
GCAACTAACCATATCAACAAGAGAAATGATCTTAGTAAAGTTAAAGATTA
AAAATGTCAAAGCCTATGCTAAGTGTTAGTGTTGCTATTTTTATAGAAAA
CGGAAGGGTCgcttaatttgaaattttgaaaataatgtttaaaaatctca
attttaagTTATGCTGTCGATTTTCGTTAGAGCACAAAAATGACGTTGAC
ACTGTCTTTCTTAGAAGAAGTCCATACAAGCAGTGTCGTTGATGTTTGCT
GTGTCGAACGAAGGAGCGGGAAAGCTCACCAGGATTGTGAATGGTGAGAG
AATGGCTGAGATCAGAGGTACGGCTTCAGGACATAATTTTTAGACCTTTT
TATATCAAACTCCAAATGAGCTTAATCGCAATAAACAATATTTACGATGC
ATGTAAAATATGTTGGTACAAAATATGATTATGTATACTTTTGGCGaact
ttcgcgaacagaaactttcgcgagtctGGCCGTTTCAATTTTGCTTCAAC
TCGCTCACTCCTTCTTGTGGGTGCTATTTTCTCATTAAAAACCCAAAATC
TCGTCTGatacacattgtttttataatcagctcatggcgttctaaatcta
cagATTTAAATCTGTAGATTTAGAACGCAATGAATcagctccaattttcg
ggtcaaggcttgggttgcttagcattctagctcattttctgaaaaataag
cTTCAACCAACCATGCAGAACCATGATGTTTACTTTTTACGATAGTGAAA
TAAATTGGCTAATTTCAGGGCTCGAGCCTTAGCAACCTGAttacttattt
aaaaaaatgtgtagacaACAACATTATTTAATGTGAAAATCCTTAACGTC
AATCTTCTTGCTCTGCCAAATACACTAAATTACTTTTTTAAATGCATCTT
TAAATCCTACAGGTCGATCACCACTCCTTGGTGAATTCAAGTTGAAGTTC
CGCAATCCAGCTGGTTCAGTGAAACTCAACAGTTATTTGACAACACACAC
TGACGATATTTACAACCCAAAAGATACAATTATGAAGAAACTCCATTata
aaacaaaaccaaaaagtCGTGATCAAACACCGTTAATCGGATTACCGGGT
GACGTTCCAAACCCGAACGGGAAACCGAATAATTTGTTTGTGCACCAAGT
CACATTGCAATTACCGTTTCAGATCGATGCCGTGTTTGAATCAGAGGACG
GCGATAATGACCGGAAAGAGTCATTAGCCGGTGACGTCTTCGCTCGTGAA
GTCAAACAAAAACGGAAAGATTTTAACGAACATTTTGAAAACACTTTCCA
ACTCTCTGAGAAAGGTTTTACTGACGAACAAATCAGTTTCGCGAAGGCAG
CTTTCAGTAATTGCATCGGTGGAATAACATATCTTCATGGGAAATCTAAA
GTCACGTCACGGCGTTTGAAGGAACCTGTTGATTACTGGGAGACTGGGCT
CTACACAGGGGTGCCTTCGCGATCCTTCTTTCCGCGTGGTTTTTTATGGG
ACGAAGGCTTCCATCAAATCATGATACAAAAATGGGATGCTGGTATCACA
AGACAGATTCTTTCACACTGGCTTGATCTTCTCAATCAAGATGGTTGGAT
CCCGCGCGAACAAATCCTTGGAATCGAAGCCCGCCGTAAAGTACCGGACG
AATTTGTGGTTCAACATAATGAGAACGCCAACCCGCCCACTTTCTTTATC
ACCATAGAAACACTGATTCGAACGGAGAAAGCGGAACATGGTCACGTGAC
GCCAGAAACATTAAAGTTCCTTAaaagtgtattttacagactcgATCAAT
GGTACCAATGGTATAATAAAACGCAGACCGGACCTTTACCCGGCGCCTAT
CGATGGCACGGGCGTGACGCGACCACAGATCGTGAATACAATCCTAAAAC
TTTGACATCAGGTCTTGATGATTATCCCCGCGCGTCACACCCTTCGGACG
ATGAACGCCATGTTGATTTAAGATGTTGGATTGCGTTAGCTTCAGGTATT
CTTGCGGATATTGCAGATATTGTTGGAATTAAAAGTACGAAATATCGAGA
AACTGAAAGCTATTTGAAAGACAATCGACTTTTAGATCAGATGCATTGGT
CTGATAAACTGAAGACGTACGCTGATTATGGAAACCATACCAAGCTTGTT
AAGTTAGAATGGGTTCCTGTACGGTACGAACCGCACGCGCCCAAACGGTT
GGCACGTGTCGTCAAATCAAAGAAAGGACCTTCCCCAAAATTCGTCGATG
AATTCGGATATGTATCCATGTTTCCTTTTCTATTAAAAATCTTGAAACCA
GACTCGTCCAAATTACGAATTCTACTCGATGATATCCGCAGTCCTGAGAA
ACTGTGGACACAGTACGGTTTAAGATCACTATCGCGCACCGCTCCCTCGT
ATAATAAACACAACACGGAACACGACAAACCATACTGGAGAGGTCCGATC
TGGATCAACATCAATTTCCTTACCTGTAAAGCGCTCCATTATTACGCGCA
CATTGAGGGGCCGCATCAAGGACACGCAAAGATGATCTATGAAGAATTAC
GTCATAATCTTGTTAATAATGTCTATAAACAGTACCAGAAAACAGGATAC
ATATGGGAACAGTATGATGATAAAACGGGGAAAGGACAAGGCTGTTATCC
GTTCACTGGATGGTCAGCTCTTATTAATCTCATAATGGCTGAAAAGTATT
AATGAATTCGTCCCATACTCTTGAATGAAACTttctattttagatttttt
cttttaatttctagGTAATTTTTAAGTGACCAGTCTGGTtacatttttga
caattttataGGTAGAATTTTTCAACTAGGTTTATAATTCAAACATACAC
AAAATATTAAAGCGAATTCAAATTATGTTCGCTGTCACTTGATCGCATTT
TTCTGGCATTCcc

Coding sequence (CDS) from alignment at sc0000119:424658..431670+

>TCONS_00011010 ID=TCONS_00011010|Name=TCONS_00011010|organism=Clytia hemisphaerica|type=CDS|length=2457bp|location=Sequence derived from alignment at sc0000119:424658..431670+ (Clytia hemisphaerica)
ATGGCTATTCGTCAGCGTAAAGGAAAGGAGAATTCCTCCCCTCCTTCAGG
AACTTCTCAAACTTCTCAAACCTCATCCAAAAAGAAATCTGGCAAGAATA
AAACGCATCAATTTGCTATCATCTTTGGAAGTGTGGTATTTGCAGTTGTG
GCAAGCTATGTATGGAGCTATATGAAAACCATTCGTGCTTACACACCGTT
GAACGCACCCAAAGCTGTTGAATTAATCAGAGATCATAATGATGACTTAC
ACAGACTCTGGGGCACCTACAGATCGCATCTTTATTTTGGTGTACGCGCA
CGGGCGCCAGATTCATTGCTATTCGGCTTGCTTTGGTTCGCTCAATATCC
TCAGGATGGACAACTAAAAGTCAGgtattcatgCGAGCAAGGTGACAACC
TGCCGAAATACGGTTGGCTACAACACGACGGCTCAACTTACGGTGCGCAA
GAGATTGTAGATGAAGACTTCATTCTAACCACTGAGTACATCAAACGTCC
TAATCATGGATCGAAAGGTGGTGATTGGACGGCAAGAGTTAAAGGGAAAT
CAAGAAACGGTGATAAGAAGTCCATACAAGCAGTGTCGTTGATGTTTGCT
GTGTCGAACGAAGGAGCGGGAAAGCTCACCAGGATTGTGAATGGTGAGAG
AATGGCTGAGATCAGAGGTCGATCACCACTCCTTGGTGAATTCAAGTTGA
AGTTCCGCAATCCAGCTGGTTCAGTGAAACTCAACAGTTATTTGACAACA
CACACTGACGATATTTACAACCCAAAAGATACAATTATGAAGAAACTCCA
TTataaaacaaaaccaaaaagtCGTGATCAAACACCGTTAATCGGATTAC
CGGGTGACGTTCCAAACCCGAACGGGAAACCGAATAATTTGTTTGTGCAC
CAAGTCACATTGCAATTACCGTTTCAGATCGATGCCGTGTTTGAATCAGA
GGACGGCGATAATGACCGGAAAGAGTCATTAGCCGGTGACGTCTTCGCTC
GTGAAGTCAAACAAAAACGGAAAGATTTTAACGAACATTTTGAAAACACT
TTCCAACTCTCTGAGAAAGGTTTTACTGACGAACAAATCAGTTTCGCGAA
GGCAGCTTTCAGTAATTGCATCGGTGGAATAACATATCTTCATGGGAAAT
CTAAAGTCACGTCACGGCGTTTGAAGGAACCTGTTGATTACTGGGAGACT
GGGCTCTACACAGGGGTGCCTTCGCGATCCTTCTTTCCGCGTGGTTTTTT
ATGGGACGAAGGCTTCCATCAAATCATGATACAAAAATGGGATGCTGGTA
TCACAAGACAGATTCTTTCACACTGGCTTGATCTTCTCAATCAAGATGGT
TGGATCCCGCGCGAACAAATCCTTGGAATCGAAGCCCGCCGTAAAGTACC
GGACGAATTTGTGGTTCAACATAATGAGAACGCCAACCCGCCCACTTTCT
TTATCACCATAGAAACACTGATTCGAACGGAGAAAGCGGAACATGGTCAC
GTGACGCCAGAAACATTAAAGTTCCTTAaaagtgtattttacagactcgA
TCAATGGTACCAATGGTATAATAAAACGCAGACCGGACCTTTACCCGGCG
CCTATCGATGGCACGGGCGTGACGCGACCACAGATCGTGAATACAATCCT
AAAACTTTGACATCAGGTCTTGATGATTATCCCCGCGCGTCACACCCTTC
GGACGATGAACGCCATGTTGATTTAAGATGTTGGATTGCGTTAGCTTCAG
GTATTCTTGCGGATATTGCAGATATTGTTGGAATTAAAAGTACGAAATAT
CGAGAAACTGAAAGCTATTTGAAAGACAATCGACTTTTAGATCAGATGCA
TTGGTCTGATAAACTGAAGACGTACGCTGATTATGGAAACCATACCAAGC
TTGTTAAGTTAGAATGGGTTCCTGTACGGTACGAACCGCACGCGCCCAAA
CGGTTGGCACGTGTCGTCAAATCAAAGAAAGGACCTTCCCCAAAATTCGT
CGATGAATTCGGATATGTATCCATGTTTCCTTTTCTATTAAAAATCTTGA
AACCAGACTCGTCCAAATTACGAATTCTACTCGATGATATCCGCAGTCCT
GAGAAACTGTGGACACAGTACGGTTTAAGATCACTATCGCGCACCGCTCC
CTCGTATAATAAACACAACACGGAACACGACAAACCATACTGGAGAGGTC
CGATCTGGATCAACATCAATTTCCTTACCTGTAAAGCGCTCCATTATTAC
GCGCACATTGAGGGGCCGCATCAAGGACACGCAAAGATGATCTATGAAGA
ATTACGTCATAATCTTGTTAATAATGTCTATAAACAGTACCAGAAAACAG
GATACATATGGGAACAGTATGATGATAAAACGGGGAAAGGACAAGGCTGT
TATCCGTTCACTGGATGGTCAGCTCTTATTAATCTCATAATGGCTGAAAA
GTATTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006170	XLOC_006170	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011010-protein	TCONS_00011010-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000119	supercontig	sc0000119:424658..431670 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4585	16.1179	4.53271	2.66386	16.9477	13.6428	19.8666	19.4609	11.1942	12.1424	12.2535	5.88929	6.53487	4.9191	8.97466	12.7678	15.2149	9.3697	3.7272	10.7473	7.42661	7.46502	39.6998	32.3999	9.20378	8.03296	7.91602	5.54128	26.6381	25.4484

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR031335	Glyco_hydro_63_C
IPR031631	Glyco_hydro_63N
IPR008928	6-hairpin_glycosidase-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

Blast

[Close]

BLAST of TCONS_00011010 vs. Swiss-Prot (Human)
Match: MOGS (Mannosyl-oligosaccharide glucosidase OS=Homo sapiens GN=MOGS PE=1 SV=5)

HSP 1 Score: 620.542 bits (1599), Expect = 0.000e+0
Identity = 335/808 (41.46%), Postives = 473/808 (58.54%), Query Frame = 2

Query:  161 FAIIFGSVVFAVVASYVWSYMKTIRAYTPLNAPKAVELIRDHNDDLHRL-WGTYRSHLYFGVRARAPDSLLFGLLWFAQYPQDGQLKVRYSCEQGDNLPKYGWLQHDGSTYGAQEIVDEDFILTTEYIKRPNHGSKGGDWTARVKGKSRNGDKKSIQAVSLMFAVSNEGAGKLTRIVNGE-RMAEIRGRSPLLGEFKLKFRNPAG----SVKLNSYLTTHTDDIYNPKDTIMKKLH----YKTKPKSRDQTPLIGLPGDVP----NPNGKPNNLF-VHQVTLQLPFQIDAVFES---EDGDNDRKESLAGDVFAREVKQKRKDFNEHFENTFQLSEKGFTDEQISFAKAAFSNCIGGITYLHGKSKVT-------SRRLKEPVDYWETGLYTGVPSRSFFPRGFLWDEGFHQIMIQKWDAGITRQILSHWLDLLNQDGWIPREQILGIEARRKVPDEFVVQHNENANPPTFFITIETLIRTEKAEHGHVTPETLKFLKSVFYRLDQWYQWYNKTQTGPLPGAYRWHGRDATTDREYNPKTLTSGLDDYPRASHPSDDERHVDLRCWIALASGILADIADIVGIK--STKYRETESYLKDNRLLDQMHWSDKLKTYADYGNHTKLVKLEWVPVRYEPHAPKRLARVVKSKKGPSPKFVDEFGYVSMFPFLLKILKPDSSKLRILLDDIRSPEKLWTQYGLRSLSRTAPSYNKHNTEHDKPYWRGPIWININFLTCKALHYYAHIEGPHQGHAKMIYEELRHNLVNNVYKQYQKTGYIWEQYDDKTGKGQGCYPFTGWSALINLIMAEKY 2503
             A++  S+   +   +V ++ +  RA T  +AP  +            L WGTYR H+YFG++ R+P  LL GL+W  Q    G  K+R++CEQGD +  YGW  HDG ++G Q I D    LTTE++KRP  G  GGDW+ RV  + ++    ++  VSL F V  +G   L   V  + ++  I G +  LG+F+     P      + K  SY    T +   P  T M K      ++ +P        +GLPG +      P+G+    F + QVTL++P  I+ VFES   + G N     LAG +  + ++   + F E FE TFQL EKG +  +    +AA S  +GGI Y +G+  V        S +  +P  +    L+T VPSRSFFPRGFLWDEGFHQ+++Q+WD  +TR+ L HWL LLN DGWI REQILG EAR +VP EF+VQ   +ANPPT  + +  ++           P+ L FL+    RL  W+ W +++Q GPLP +YRW GRD       NPKTL SGLDDYPRASHPS  ERH+DLRCW+AL + +L  +A+ +G    + +     + L+    LD++HW+ +L  +AD+GNHTK V+L+       P  P+ L RVV  +  P  ++VD  GYVS+FP LL++L P SS+L  LLD +     LW+ +GLRSL+ ++  Y + N+EHD PYWRG +W+N+N+L   ALH+Y H+EGPHQ  A  ++ ELR N+V NV++QYQ TG++WEQY D+ G+G GC PF GW++L+ L MAE Y
Sbjct:   46 LAVVVLSLALGMSGRWVLAWYRARRAVTLHSAPPVLPADSSSPAVAPDLFWGTYRPHVYFGMKTRSPKPLLTGLMWAQQGTTPGTPKLRHTCEQGDGVGPYGWEFHDGLSFGRQHIQDGALRLTTEFVKRPG-GQHGGDWSWRVTVEPQDSGTSALPLVSLFFYVVTDGKEVLLPEVGAKGQLKFISGHTSELGDFRFTLLPPTSPGDTAPKYGSYNVFWTSNPGLPLLTEMVKSRLNSWFQHRPPGAPPERYLGLPGSLKWEDRGPSGQGQGQFLIQQVTLKIPISIEFVFESGSAQAGGNQALPRLAGSLLTQALESHAEGFRERFEKTFQLKEKGLSSGEQVLGQAALSGLLGGIGYFYGQGLVLPDIGVEGSEQKVDPALFPPVPLFTAVPSRSFFPRGFLWDEGFHQLVVQRWDPSLTREALGHWLGLLNADGWIGREQILGDEARARVPPEFLVQRAVHANPPTLLLPVAHMLEVGD-------PDDLAFLRKALPRLHAWFSWLHQSQAGPLPLSYRWRGRDPALPTLLNPKTLPSGLDDYPRASHPSVTERHLDLRCWVALGARVLTRLAEHLGEAEVAAELGPLAASLEAAESLDELHWAPELGVFADFGNHTKAVQLK-------PRPPQGLVRVV-GRPQPQLQYVDALGYVSLFPLLLRLLDPTSSRLGPLLDILADSRHLWSPFGLRSLAASSSFYGQRNSEHDPPYWRGAVWLNVNYLALGALHHYGHLEGPHQARAAKLHGELRANVVGNVWRQYQATGFLWEQYSDRDGRGMGCRPFHGWTSLVLLAMAEDY 837

The following BLAST results are available for this feature:

BLAST of TCONS_00011010 vs. Swiss-Prot (Human)

BLAST of TCONS_00011010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MOGS	0.000e+0	41.46	Mannosyl-oligosaccharide glucosidase OS=Homo sapie...	[more]

You are here

TCONS_00011010 (transcript) - C. hemisphaerica