TCONS_00011027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011027
Unique NameTCONS_00011027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011027 ID=TCONS_00011027|Name=TCONS_00011027|organism=Clytia hemisphaerica|type=transcript|length=863bp
AATTATCTTTACAAAGAGAAAGTTCGGTTGGATGAGCTCATCACCAgctt
aaaattgaaaaacaaaaaacagAAAAGAGAATTCAAAGAGTGGAGGTCAG
TATATGGGAAAGAAATGTCTCGCCAAATGGCCAGGATGGAAGCAGAATTA
GTTGGCGTCACAAAGGAAAATGATGTGCTCAGAGAAGCTGTTCATTGTCT
CACTGGAGAAGCTCAAGCTAAGGACGTAATGATCGAAGAACTTTTGGCAG
AAGAAATGGCATCAGTTGTTATCCCCAGCGAGGAAAAAGATATGGACATC
AagctaaaagaagaaaaatttgagaTCAATTCAAACCCATCAGAAACAAA
ATTACTATTCGTTATGGGTGATGTGAAGGCCCTTGCTGCTTATAATTTTG
ACGGCACATTGAAAGAAAACGACCTGATTGTCGATAAAGCCGACGTCCCA
GATGAGCCTGTTTCAATAATTGCCACCAAAAAGACCGACTTAATAAATGA
CGGCATCGAAAAAACCGTCGTAATAATGAAGGCTGGTGCAGCAGAGAGTT
CAGCAGAAACCCTCGCTATGCTCTATGAAACAGGTTATCAccaagaaatc
aaacaaaaacgaaaaaataagaaacaaaagCGTCGCAAGCgacgaaaaca
atagaaaaatactAATTCTCTGCCCGTatatacaaaacaaaacaaaaaat
tttcaacttggtttttatataatttattcccccaaaaaaatattttgaat
taggagtttattttatttgttagGAATTATTTGATTTAGGACtttattta
ttgatttgatttgtgTATATATCCACCATTGTAAATAATTATATGAAAAA
TTTTAATACCggg
Run BLAST on NCBI

protein sequence of TCONS_00011027-protein

>TCONS_00011027-protein ID=TCONS_00011027-protein|Name=TCONS_00011027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
NYLYKEKVRLDELITSLKLKNKKQKREFKEWRSVYGKEMSRQMARMEAEL
VGVTKENDVLREAVHCLTGEAQAKDVMIEELLAEEMASVVIPSEEKDMDI
KLKEEKFEINSNPSETKLLFVMGDVKALAAYNFDGTLKENDLIVDKADVP
DEPVSIIATKKTDLINDGIEKTVVIMKAGAAESSAETLAMLYETGYHQEI
KQKRKNKKQKRRKRRKQ
Run BLAST on NCBI

transcript from alignment at sc0000119:217720..220079-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011027 ID=TCONS_00011027|Name=TCONS_00011027|organism=Clytia hemisphaerica|type=transcript|length=2360bp|location=Sequence derived from alignment at sc0000119:217720..220079- (Clytia hemisphaerica)
AATTATCTTTACAAAGAGAAAGTTCGGTTGGATGAGCTCATCACCAGCTT
AAAATTGAAAAACAAAAAACAGGTAAAAATTCAAATGTGTAATTTTATTT
TTCATTTTCCGTCTTCATTTTCAATATTTTACACAAAAGCAAAGGGCTAT
TCCAAAAATAGTCTGTAGCCCCTATGTTGAGGAGGTGTGATGTTCAGAGT
GGTCTGGAAAATAGAAAATCCAGAGTGGTCTGGTTTTTTAAATGATAAAA
TCCAGGGTGGTCAGTAAAATGGGAGAAGAAAATCCAGGGGGTCACCTTTT
TAAAAGAAGATCTCCTCAACATAGCGGGTACAACTTTTATCTGGAATAAC
CCAAACCACTGCTAACTTATTATACCATATTACGCTGCTTCTTGTTTATA
TGGCACCAATTATCATTCTAAACATTTTTATATTAGAAAAGAGAATTCAA
AGAGTGGAGGTCAGTATATGGGAAAGAAATGTCTCGCCAAATGGTAAGTG
CTTACTTGCAACCTAATCTTTTCAGCTTGGCCGGTGGATCAAAATCGCCA
ATTTCGATACGCCTTTTACACAGAAACAAGAGGTTTTTGGAACCTTTCGA
AGCTAACTGAGCAAGAAAGATATCGTGTCAACGATACTGTCAATTTTTTC
CTCAAGAGAAATTTTTAGCGTGTTATATTTTTGTGTAGGGAGGGTAAATC
TGCTGAATGATTTAAAAACTTAAAATCTTTCACGCTGAAAATAATGACAA
TTTGCTTTGATTCTAAATTTCCAGGCCAGGATGGAAGCAGAATTAGTTGG
CGTCACAAAGGAAAATGATGTGCTCAGAGAAGCTGTTCATTGTCTCACTG
GAGAAGCTCAAGTAGGTTGAATTTTCCTGGGCATGTTAAATAGGACGGGG
GGCGTGAAGGCGGTCGCTAACACCGAAATACCGAAACACGTTTTAAAATC
AGTGACAAAACCCATAGTACACGTTTTTTATAAAAAAATGAGGCTGAAAA
TTGTCCAAACCTTAGAACTGATTAAGAACAATCTGAGTCTCAGAGCTCGG
AGATTACTAAGGCAAGTACTGATTTTAGCAGATTTTAACCCATTTTTAAT
TTTTAAGTAAAGAAACTAAGCGTATTAAGAACATCGTAAGAACATACAAG
CCAAAGCTTAATACTTACTATTATCAATCTACACCATCAAGAAATACGAC
ATACTTTTATGTGATTTCCAGGCTAAGGACGTAATGATCGAAGAACTTTT
GGCAGAAGAAATGGCATCAGTTGTTGTAAGTTCTTTACTTTTTTGCACTC
CTTACCCTGGTCCTCTCAAGTTTAAGGGAGATCATTTTCAAGCAAATCAC
AGGATTAAAATTGGGGAATATTTCTTATTCACGCGAACCATTACTACACC
AAGGATTATTAATCATCTTAGACTACTGAAGAAATACTGACCGGCCCTCC
TTGAAGAGGCCTTAGNATTATTAATCATCTTAGACTACTGAAGAAATACT
GACCGGCCATCCTTGAAGAGGCCTTACCTCAGAAATTACACCTTATTTTT
AGCCAAAATGGGCTACTTTTTTAGAAAGCGTGGTCGAAAGCTGTCCAACG
GGGCCGAAGTGCCTAAATCATCATTTTCCACCCGTCCCGCTTCGTCAAAC
CTTTGTCTACTTAAAAGTACCTCCCAAAATTATCCAATAAGGTGAAAACA
GTGCATAAAACGAATGTTTAGAAAAACAGTCTAGAATAGTTCAAATATTC
TAAGAATTCTTTTCCAGATCCCCAGCGAGGAAAAAGATATGGACATCAAG
CTAAAAGAAGAAAAATTTGAGATCAATTCAAACCCATCAGAAACAAAATT
ACTATTCGTTATGGGTGATGTGAAGGCCCTTGCTGCTTATAATTTTGACG
GCACATTGAAAGAAAACGACCTGATTGTCGATAAAGCCGACGTCCCAGAT
GAGCCTGTTTCAATAATTGCCACCAAAAAGACCGACTTAATAAATGACGG
CATCGAAAAAACCGTCGTAATAATGAAGGCTGGTGCAGCAGAGAGTTCAG
CAGAAACCCTCGCTATGCTCTATGAAACAGGTTATCACCAAGAAATCAAA
CAAAAACGAAAAAATAAGAAACAAAAGCGTCGCAAGCGACGAAAACAATA
GAAAAATACTAATTCTCTGCCCGTATATACAAAACAAAACAAAAAATTTT
CAACTTGGTTTTTATATAATTTATTCCCCCAAAAAAATATTTTGAATTAG
GAGTTTATTTTATTTGTTAGGAATTATTTGATTTAGGACTTTATTTATTG
ATTTGATTTGTGTATATATCCACCATTGTAAATAATTATATGAAAAATTT
TAATACCGGG

Coding sequence (CDS) from alignment at sc0000119:217720..220079-

>TCONS_00011027 ID=TCONS_00011027|Name=TCONS_00011027|organism=Clytia hemisphaerica|type=CDS|length=3270bp|location=Sequence derived from alignment at sc0000119:217720..220079- (Clytia hemisphaerica)
ATCCCCAGCGAGGAAAAAGATATGGACATCAAGCTAAAAGAAGAAAAATT
TGAGATCAATTCAAACCCATCAGAAACAAAATTACTATTCGTTATGGGTG
ATGTGAAGGCCCTTGCTGCTTATAATTTTGACGGCACATTGAAAGAAAAC
GACCTGATTGTCGATAAAGCCGACGTCCCAGATGAGCCTGTTTCAATAAT
TGCCACCAAAAAGACCGACTTAATAAATGACGGCATCGAAAAAACCGTCG
TAATAATGAAGGCTGGTGCAGCAGAGAGTTCAGCAGAAACCCTCGCTATG
CTCTATGAAACAGGTTATCACCAAGAAATCAAACAAAAACGAAAAAATAA
GAAACAAAAGCGTCGCAAGCGACGAAAACAATAGGCTAAGGACGTAATGA
TCGAAGAACTTTTGGCAGAAGAAATGGCATCAGTTGTTGCCAGGATGGAA
GCAGAATTAGTTGGCGTCACAAAGGAAAATGATGTGCTCAGAGAAGCTGT
TCATTGTCTCACTGGAGAAGCTCAAAAAAGAGAATTCAAAGAGTGGAGGT
CAGTATATGGGAAAGAAATGTCTCGCCAAATGAATTATCTTTACAAAGAG
AAAGTTCGGTTGGATGAGCTCATCACCAGCTTAAAATTGAAAAACAAAAA
ACAGATCCCCAGCGAGGAAAAAGATATGGACATCAAGCTAAAAGAAGAAA
AATTTGAGATCAATTCAAACCCATCAGAAACAAAATTACTATTCGTTATG
GGTGATGTGAAGGCCCTTGCTGCTTATAATTTTGACGGCACATTGAAAGA
AAACGACCTGATTGTCGATAAAGCCGACGTCCCAGATGAGCCTGTTTCAA
TAATTGCCACCAAAAAGACCGACTTAATAAATGACGGCATCGAAAAAACC
GTCGTAATAATGAAGGCTGGTGCAGCAGAGAGTTCAGCAGAAACCCTCGC
TATGCTCTATGAAACAGGTTATCACCAAGAAATCAAACAAAAACGAAAAA
ATAAGAAACAAAAGCGTCGCAAGCGACGAAAACAATAGGCTAAGGACGTA
ATGATCGAAGAACTTTTGGCAGAAGAAATGGCATCAGTTGTTGCCAGGAT
GGAAGCAGAATTAGTTGGCGTCACAAAGGAAAATGATGTGCTCAGAGAAG
CTGTTCATTGTCTCACTGGAGAAGCTCAAAAAAGAGAATTCAAAGAGTGG
AGGTCAGTATATGGGAAAGAAATGTCTCGCCAAATGAATTATCTTTACAA
AGAGAAAGTTCGGTTGGATGAGCTCATCACCAGCTTAAAATTGAAAAACA
AAAAACAGATCCCCAGCGAGGAAAAAGATATGGACATCAAGCTAAAAGAA
GAAAAATTTGAGATCAATTCAAACCCATCAGAAACAAAATTACTATTCGT
TATGGGTGATGTGAAGGCCCTTGCTGCTTATAATTTTGACGGCACATTGA
AAGAAAACGACCTGATTGTCGATAAAGCCGACGTCCCAGATGAGCCTGTT
TCAATAATTGCCACCAAAAAGACCGACTTAATAAATGACGGCATCGAAAA
AACCGTCGTAATAATGAAGGCTGGTGCAGCAGAGAGTTCAGCAGAAACCC
TCGCTATGCTCTATGAAACAGGTTATCACCAAGAAATCAAACAAAAACGA
AAAAATAAGAAACAAAAGCGTCGCAAGCGACGAAAACAATAGGCTAAGGA
CGTAATGATCGAAGAACTTTTGGCAGAAGAAATGGCATCAGTTGTTGCCA
GGATGGAAGCAGAATTAGTTGGCGTCACAAAGGAAAATGATGTGCTCAGA
GAAGCTGTTCATTGTCTCACTGGAGAAGCTCAAAAAAGAGAATTCAAAGA
GTGGAGGTCAGTATATGGGAAAGAAATGTCTCGCCAAATGAATTATCTTT
ACAAAGAGAAAGTTCGGTTGGATGAGCTCATCACCAGCTTAAAATTGAAA
AACAAAAAACAGATCCCCAGCGAGGAAAAAGATATGGACATCAAGCTAAA
AGAAGAAAAATTTGAGATCAATTCAAACCCATCAGAAACAAAATTACTAT
TCGTTATGGGTGATGTGAAGGCCCTTGCTGCTTATAATTTTGACGGCACA
TTGAAAGAAAACGACCTGATTGTCGATAAAGCCGACGTCCCAGATGAGCC
TGTTTCAATAATTGCCACCAAAAAGACCGACTTAATAAATGACGGCATCG
AAAAAACCGTCGTAATAATGAAGGCTGGTGCAGCAGAGAGTTCAGCAGAA
ACCCTCGCTATGCTCTATGAAACAGGTTATCACCAAGAAATCAAACAAAA
ACGAAAAAATAAGAAACAAAAGCGTCGCAAGCGACGAAAACAATAGGCTA
AGGACGTAATGATCGAAGAACTTTTGGCAGAAGAAATGGCATCAGTTGTT
GCCAGGATGGAAGCAGAATTAGTTGGCGTCACAAAGGAAAATGATGTGCT
CAGAGAAGCTGTTCATTGTCTCACTGGAGAAGCTCAAAAAAGAGAATTCA
AAGAGTGGAGGTCAGTATATGGGAAAGAAATGTCTCGCCAAATGAATTAT
CTTTACAAAGAGAAAGTTCGGTTGGATGAGCTCATCACCAGCTTAAAATT
GAAAAACAAAAAACAGATCCCCAGCGAGGAAAAAGATATGGACATCAAGC
TAAAAGAAGAAAAATTTGAGATCAATTCAAACCCATCAGAAACAAAATTA
CTATTCGTTATGGGTGATGTGAAGGCCCTTGCTGCTTATAATTTTGACGG
CACATTGAAAGAAAACGACCTGATTGTCGATAAAGCCGACGTCCCAGATG
AGCCTGTTTCAATAATTGCCACCAAAAAGACCGACTTAATAAATGACGGC
ATCGAAAAAACCGTCGTAATAATGAAGGCTGGTGCAGCAGAGAGTTCAGC
AGAAACCCTCGCTATGCTCTATGAAACAGGTTATCACCAAGAAATCAAAC
AAAAACGAAAAAATAAGAAACAAAAGCGTCGCAAGCGACGAAAACAATAG
GCTAAGGACGTAATGATCGAAGAACTTTTGGCAGAAGAAATGGCATCAGT
TGTTGCCAGGATGGAAGCAGAATTAGTTGGCGTCACAAAGGAAAATGATG
TGCTCAGAGAAGCTGTTCATTGTCTCACTGGAGAAGCTCAAAAAAGAGAA
TTCAAAGAGTGGAGGTCAGTATATGGGAAAGAAATGTCTCGCCAAATGAA
TTATCTTTACAAAGAGAAAGTTCGGTTGGATGAGCTCATCACCAGCTTAA
AATTGAAAAACAAAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006181XLOC_006181Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011027-proteinTCONS_00011027-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011027-exon-sc0000119-1575043694:220008..220079TCONS_00011027-exon-sc0000119-1575043694:220008..220079Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1575043694:219587..219643TCONS_00011027-exon-sc0000119-1575043694:219587..219643Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1575043694:219219..219305TCONS_00011027-exon-sc0000119-1575043694:219219..219305Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1575043694:218805..218858TCONS_00011027-exon-sc0000119-1575043694:218805..218858Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1575043694:217720..218312TCONS_00011027-exon-sc0000119-1575043694:217720..218312Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1510915933:220008..220079TCONS_00011027-exon-sc0000119-1510915933:220008..220079Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1510915933:219587..219643TCONS_00011027-exon-sc0000119-1510915933:219587..219643Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1510915933:219219..219305TCONS_00011027-exon-sc0000119-1510915933:219219..219305Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1510915933:218805..218858TCONS_00011027-exon-sc0000119-1510915933:218805..218858Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1510915933:217720..218312TCONS_00011027-exon-sc0000119-1510915933:217720..218312Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1491911889:220008..220079TCONS_00011027-exon-sc0000119-1491911889:220008..220079Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1491911889:219587..219643TCONS_00011027-exon-sc0000119-1491911889:219587..219643Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1491911889:219219..219305TCONS_00011027-exon-sc0000119-1491911889:219219..219305Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1491911889:218805..218858TCONS_00011027-exon-sc0000119-1491911889:218805..218858Clytia hemisphaericaexon
TCONS_00011027-exon-sc0000119-1491911889:217720..218312TCONS_00011027-exon-sc0000119-1491911889:217720..218312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:217720..220079 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.59672	0.740595	0.429951	0.781189	2.85307	1.67645	0.20923	0.065293	0.0914263	0.226493	0	0.0722568	0.39686	0.0374675	0	0	0.366509	0.25044	0	0.0603434	0.262247	0.153498	0.124398	0.0565478	0.0582429	0.155941	0	0	0	0.12269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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