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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011050 ID=TCONS_00011050|Name=TCONS_00011050|organism=Clytia hemisphaerica|type=transcript|length=2686bpRun BLAST on NCBI protein sequence of TCONS_00011050-protein >TCONS_00011050-protein ID=TCONS_00011050-protein|Name=TCONS_00011050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp MDFTVVTKNGLNHPKPDIKFTYGTAGFRMKADLLDSVMFRMGLLAVLRSKRun BLAST on NCBI transcript from alignment at sc0000119:443402..457396- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011050 ID=TCONS_00011050|Name=TCONS_00011050|organism=Clytia hemisphaerica|type=transcript|length=13995bp|location=Sequence derived from alignment at sc0000119:443402..457396- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000119:443402..457396- >TCONS_00011050 ID=TCONS_00011050|Name=TCONS_00011050|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at sc0000119:443402..457396- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011050 vs. Swiss-Prot (Human)
Match: AGM1 (Phosphoacetylglucosamine mutase OS=Homo sapiens GN=PGM3 PE=1 SV=1) HSP 1 Score: 519.62 bits (1337), Expect = 5.464e-174 Identity = 265/499 (53.11%), Postives = 348/499 (69.74%), Query Frame = 2
Query: 53 MDFTVVTKNGLNHPKPD-IKFTYGTAGFRMKADLLDSVMFRMGLLAVLRSKCKEGKSIGVMVTASHNPEPDNGVKLVDPYGEMLEQSWEKHATKIAQSSDTDLVQCLQDVVSEENINTSVTANVVVGMDTRPSSTALLSSVREGVESLGGQCKDYGVVSTPQLHYFVTCINTNGSYGEPTEEGYFKKFSNAFIKLHNLIG-SNLTTRPSKLDGANGVGALKGRVLSKYISEYLKIDVFNDGTNGILNKGCGADFVKTNQKAPAGIEMEVNDKCLAYDGDADRVVYFYKNSENKFKLLDGDKIATLIASFIKEKLDIAGIQLDKGLGVVQTAYANGSSTNYLNDKMGVPVTIAKTGVKHLHHKALSYDIGVYFEANGHGTVIYSDNXXXXXXXXXXXXXNDQKRAVEILSAFIDLTNETVGDAMSDMLLVETVLLERQITCESWDREYTDLPNKLSKVAVKDRRVIQPNEDETRVLQPTELQDKIDQVVKLFPKARSFVR 1543
MD +TK H KP+ + YGTAGFR KA+ LD VMFRMGLLAVLRSK + +IGVMVTASHNPE DNGVKLVDP GEML SWE+HAT +A + + D+ + L D+ +E +N A VV+G DTRPSS L SV +GV LGGQ DYG+++TPQLHY V C NT G YG+ T EGY++K S AF++L S R K+D ANG+GALK R + Y S+ L + +FNDG+ G LN CGADFVK++QK P G+E++ N++C ++DGDADR+VY+Y +++ F L+DGDKIATLI+SF+KE L G L+ +GVVQTAYANGSST YL + M VPV KTGVKHLHHKA +DIGVYFEANGHGT ++S + +I +A+ + +++A ++L IDL N+ GDA+SDML++E +L + +T + WD YTDLPN+ KV V DRRVI + E + + P LQ+ I+ +VK + +R+FVR
Sbjct: 1 MDLGAITKYSALHAKPNGLILQYGTAGFRTKAEHLDHVMFRMGLLAVLRSK-QTKSTIGVMVTASHNPEEDNGVKLVDPLGEMLAPSWEEHATCLANAEEQDMQRVLIDISEKEAVNLQQDAFVVIGRDTRPSSEKLSQSVIDGVTVLGGQFHDYGLLTTPQLHYMVYCRNTGGRYGKATIEGYYQKLSKAFVELTKQASCSGDEYRSLKVDCANGIGALKLREMEHYFSQGLSVQLFNDGSKGKLNHLCGADFVKSHQKPPQGMEIKSNERCCSFDGDADRIVYYYHDADGHFHLIDGDKIATLISSFLKELLVEIGESLN--IGVVQTAYANGSSTRYLEEVMKVPVYCTKTGVKHLHHKAQEFDIGVYFEANGHGTALFSTAVEMKIKQSAEQLEDKKRKAAKMLENIIDLFNQAAGDAISDMLVIEAILALKGLTVQQWDALYTDLPNRQLKVQVADRRVISTTDAERQAVTPPGLQEAINDLVKKYKLSRAFVR 496 The following BLAST results are available for this feature:
BLAST of TCONS_00011050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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