TCONS_00011110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011110
Unique NameTCONS_00011110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1126

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011110 ID=TCONS_00011110|Name=TCONS_00011110|organism=Clytia hemisphaerica|type=transcript|length=1126bp
AAAAAAGCTAAGAAAATGACCCCTAAAAGTTATAagaaacccccggaaaa
tttggTCATGCATAATTGATAATAACATCTCATCACGAGTTTCTCgaact
ttttgcaaaaaatccaATCGTTAAGGGAATTCGATATCACGTGATAGTCG
CCTATATAAATCAAGTTGTAAACAAGAAAGTTACAAACAAGAAGAAATCT
CCTGTGCTGCTTCTACAGTGATAGAACATACAAGAGTTTCTGAACTGACA
GATCTTGTACAGTgttgtaaatatattttttatcaaaaacgaaaataata
cttttttcaaACGTTCATTCAAGTATTTCTTACACACTTTACTTTTGAAA
CCTAAACCAAGATGTCTGCTATTCGTCAAAACTACGCTGAAGCAAGTGAA
GCTGCTATCAACAAGCAAATCAACATGGAACTTTATGCCAGCTACGTTTA
CATGTCAATGgCTTACCATTTCGACCGTGATGATGTTGCTTTGGAAGGCT
TCCACAAATTCTTCAAGAAGTCCTCTGATGAAGAACGTGAGCACGCTGAG
AAGTTGATGCAATACCAAAACAAGAGAGGTGGACGAATTGTATTGCAAGA
CATCAAGGCCCCACAAGTCGAATGGGAAAGCCATGTCAAAGCTCTAGAAG
ATGCTCTTGCATTGGAAAGAAAAGTCAACGATTCTCTCCTTAAACTTCAC
GGTATTGCTGGAGAAAACAATGATGCCCACTTGTGCGATTTCTTGGAGGA
GAACTACTTGGCCGAGCAAGTTGATGCCATCAATGAAATCGGCAAGCTCA
TTACCAATGCCAAGAGATGCGGAGATGGCTTGGGTATTTACCAATTTGAC
AAACTCACAATGCAATCATAATTTCGTTCAAATTCACCACAATGGAGTAA
ACTTTACAGATATTATACTCACTCAATAATTGTTATGCACACTTTTTAAC
CACTTGTAGTTTACAGGAATCTTGTAAATTTTAATTCACTATATCATAGT
AATTGGGTAAGAAAAGACATGAATGTTGTCTGAAATTCTTTCGTCACTCT
TCATACTCCACCGTGGcaaattggtcaaaaaatcCTGAAATTTTAATCTA
CCAAGTCTGatccaaaaaaaagttga
Run BLAST on NCBI

protein sequence of TCONS_00011110-protein

>TCONS_00011110-protein ID=TCONS_00011110-protein|Name=TCONS_00011110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MSAIRQNYAEASEAAINKQINMELYASYVYMSMAYHFDRDDVALEGFHKF
FKKSSDEEREHAEKLMQYQNKRGGRIVLQDIKAPQVEWESHVKALEDALA
LERKVNDSLLKLHGIAGENNDAHLCDFLEENYLAEQVDAINEIGKLITNA
KRCGDGLGIYQFDKLTMQS
Run BLAST on NCBI

transcript from alignment at sc0000121:515240..517095+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011110 ID=TCONS_00011110|Name=TCONS_00011110|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at sc0000121:515240..517095+ (Clytia hemisphaerica)
AAAAAAGCTAAGAAAATGACCCCTAAAAGTTATAagaaacccccggaaaa
tttggTCATGCATAATTGATAATAACATCTCATCACGAGTTTCTCgaact
ttttgcaaaaaatccaATCGTTAAGGGAATTCGATATCACGTGATAGTCG
CCTATATAAATCAAGTTGTAAACAAGAAAGTTACAAACAAGAAGAAATCT
CCTGTGCTGCTTCTACAGTGATAGAACATACAAGAGTTTCTGAACTGACA
GATCTTGTACAGTgttgtaaatatattttttatcaaaaacgaaaataata
cttttttcaaACGTTCATTCAAGTATTTCTTACACACTTTACTTTTGAAA
CCTAAACCAAGATGTCTGCTATTCGTCAAAACTACGCTGAAGCAAGTGAA
GCTGCTATCAACAAGCAAATCAACATGGAACTTTATGCCAGCTACGTTTA
CATGTCAATGGtaagttattttttctttaaaggaaACTTTCATTTAAAGC
TGGCTATTAAGGTTTGCATGCCCATTATTGCCGGCAAAAAATATGTGGTA
GCCAACAATGTCCTATTTTTGATTATTCACTTGTTTCTGGCTATGAATTT
CTTCCATATAAATTTATCTCGAGCATAGCTCCTTCCTGTGTGCGCTGTGC
CTAGGCAAATTTGAGTTTTGTGGGTCTTTTCATTTGATCCACATCGTTAA
TTTTGGATGATAAATTCTCGTGAAAATAGAAAGAACCATTTCTTAAATaa
gtttttaatgttttcaggCTTACCATTTCGACCGTGATGATGTTGCTTTG
GAAGGCTTCCACAAATTCTTCAAGAAGTCCTCTGATGAAGAACGTGAGCA
CGCTGAGAAGGTATAACTCCAAAAGGTTACTTTCAAAATAGTTGCAGCCC
TAAAAGAATTTGCCCCagttttgagcaaatttgacaTCTTTCAATTGAGT
GGAAGGAAAACTTCCATAATTGTAAACAGAAATTTGGATGGTTATGGTGC
AGTAGAGTAGCTAAATTTTTGCAAATCGACCCCTTACAGTGTGTTTCTca
aaagtttttggaaaatttgaaataggGTGTTTGTACACCCTTCGTCTTTT
ACCCAGCAATATCTGGGAAGATTCtatgtatttttttaagaaaagggCAA
TAACTAATTTTTATTACCATCTTGCCAGATTCTACTTACAGTGATGAACC
ATGTGTATAAAGACATTTATTACTGTGCTGGTCTCTACTGAAAGTTGTAC
TTGTCTTTcaattctttgttgtttattttataGTTGATGCAATACCAAAA
CAAGAGAGGTGGACGAATTGTATTGCAAGACATCAAGGCCCCACAAGTCG
AATGGGAAAGCCATGTCAAAGCTCTAGAAGATGCTCTTGCATTGGAAAGA
AAAGTCAACGATTCTCTCCTTAAACTTCACGGTATTGCTGGAGAAAACAA
TGATGCCCACTTGTGCGATTTCTTGGAGGAGAACTACTTGGCCGAGCAAG
TTGATGCCATCAATGAAATCGGCAAGCTCATTACCAATGCCAAGAGATGC
GGAGATGGCTTGGGTATTTACCAATTTGACAAACTCACAATGCAATCATA
ATTTCGTTCAAATTCACCACAATGGAGTAAACTTTACAGATATTATACTC
ACTCAATAATTGTTATGCACACTTTTTAACCACTTGTAGTTTACAGGAAT
CTTGTAAATTTTAATTCACTATATCATAGTAATTGGGTAAGAAAAGACAT
GAATGTTGTCTGAAATTCTTTCGTCACTCTTCATACTCCACCGTGGcaaa
ttggtcaaaaaatcCTGAAATTTTAATCTACCAAGTCTGatccaaaaaaa
agttga

Coding sequence (CDS) from alignment at sc0000121:515240..517095+

>TCONS_00011110 ID=TCONS_00011110|Name=TCONS_00011110|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0000121:515240..517095+ (Clytia hemisphaerica)
ATGTCTGCTATTCGTCAAAACTACGCTGAAGCAAGTGAAGCTGCTATCAA
CAAGCAAATCAACATGGAACTTTATGCCAGCTACGTTTACATGTCAATGg
CTTACCATTTCGACCGTGATGATGTTGCTTTGGAAGGCTTCCACAAATTC
TTCAAGAAGTCCTCTGATGAAGAACGTGAGCACGCTGAGAAGTTGATGCA
ATACCAAAACAAGAGAGGTGGACGAATTGTATTGCAAGACATCAAGGCCC
CACAAGTCGAATGGGAAAGCCATGTCAAAGCTCTAGAAGATGCTCTTGCA
TTGGAAAGAAAAGTCAACGATTCTCTCCTTAAACTTCACGGTATTGCTGG
AGAAAACAATGATGCCCACTTGTGCGATTTCTTGGAGGAGAACTACTTGG
CCGAGCAAGTTGATGCCATCAATGAAATCGGCAAGCTCATTACCAATGCC
AAGAGATGCGGAGATGGCTTGGGTATTTACCAATTTGACAAACTCACAAT
GCAATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006221XLOC_006221Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011110-proteinTCONS_00011110-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011110-exon-sc0000121-1491911889:515240..515699TCONS_00011110-exon-sc0000121-1491911889:515240..515699Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1510915933:515240..515699TCONS_00011110-exon-sc0000121-1510915933:515240..515699Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1575043694:515240..515699TCONS_00011110-exon-sc0000121-1575043694:515240..515699Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1491911889:516007..516099TCONS_00011110-exon-sc0000121-1491911889:516007..516099Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1510915933:516007..516099TCONS_00011110-exon-sc0000121-1510915933:516007..516099Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1575043694:516007..516099TCONS_00011110-exon-sc0000121-1575043694:516007..516099Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1491911889:516523..517095TCONS_00011110-exon-sc0000121-1491911889:516523..517095Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1510915933:516523..517095TCONS_00011110-exon-sc0000121-1510915933:516523..517095Clytia hemisphaericaexon
TCONS_00011110-exon-sc0000121-1575043694:516523..517095TCONS_00011110-exon-sc0000121-1575043694:516523..517095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:515240..517095 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3320.01	3209.65	3869.74	3677.42	925.205	651.62	553.564	557.636	2075.96	1020.24	2043.5	2025.41	1547.22	1246.54	1835.3	1857.08	1270.69	1387.02	1677.66	2489.45	3125.55	3241.19	2459.27	2753.02	1022.43	1112.61	3843.38	5761.7	4534.04	3724.29
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008331Ferritin_DPS_dom
IPR012347Ferritin-rel
IPR014034Ferritin_CS
IPR009040Ferritin-like_diiron
IPR009078Ferritin-like_SF
Vocabulary: Biological Process
TermDefinition
GO:0006879cellular iron ion homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0008199ferric iron binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006879 cellular iron ion homeostasis
molecular_function GO:0008199 ferric iron binding
Blast
[Close]
BLAST of TCONS_00011110 vs. Swiss-Prot (Human)
Match: FRIH (Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.216e-64
Identity = 105/175 (60.00%), Postives = 130/175 (74.29%), Query Frame = 2 
Query:  350 T*TKMSAIRQNYAEASEAAINKQINMELYASYVYMSMAYHFDRDDVALEGFHKFFKKSSDEEREHAEKLMQYQNKRGGRIVLQDIKAPQV-EWESHVKALEDALALERKVNDSLLKLHGIAGENNDAHLCDFLEENYLAEQVDAINEIGKLITNAKRCG---DGLGIYQFDKLTM 862
            T    S +RQNY + SEAAIN+QIN+ELYASYVY+SM+Y+FDRDDVAL+ F K+F   S EEREHAEKLM+ QN+RGGRI LQDIK P   +WES + A+E AL LE+ VN SLL+LH +A + ND HLCDF+E +YL EQV AI E+G  +TN ++ G    GL  Y FDK T+
Sbjct:    2 TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTL 176
The following BLAST results are available for this feature:
BLAST of TCONS_00011110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRIH1.216e-6460.00Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=1 ... [more]
back to top