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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011113 ID=TCONS_00011113|Name=TCONS_00011113|organism=Clytia hemisphaerica|type=transcript|length=1482bp
ATTTTTTACCACTATCTTATTATATTTTCAGATgtagaaaaatgaaataa
tagaTAGAAAATAAAATCGACAACACACACGCACATACACCACACATACA
CCTGCACATACACCAGACATTCACAATCTCATTATTACATAGAAAATGAT
CACCTACATTTGGCTTCTCCTGTTATCggtcttcTTTTTTGGCCTTATTG
ATGGAGCTGACATCAAGTTCACAGATTCAAAGAGCTTGGTCACTGTAGAA
TCTGGCAATAATGTCACGTTAATGTGGAACTTGTATAACATTGAGAGGAG
AACAACTATAGCTCTATACTTTGATAACAAAAAAAACGAGATAGGATCAC
TATCAATCTCATCGATCACAAAAAATTACACAGATTGGACACTTGATACA
AAACCTTTGGCAACCAAGATAAAAGACTTCAAGATTGTGCTTAGTGAGGG
AAATGGAACTTTCGGATTTGTTTTGGAAGATTTGAGATATGATGACAGTA
GTGTCTTAATTGTGACCAATGAAGACAGTAGTGGGATTAAAGCACAACAC
AAGTTAACTATAAATGTTGAAGGTGGACCACATGAGTGCGGAGTCAAATC
ATTACCACAAAACATCACTTGCTCACATGACCAAGTCATTACACAAAAAA
TCACTCTCTGTGGAAAGCCTCAACCCGAAGTTACTTGGAAAATCGGGGAC
ACAGAATTTAACGGGACAGTTGGTAAAACTGAAACAGATAAACATCAATA
CATATACACCTTGAAAACGAAACTGACGTCAGACATGTGTGGAAGAAAAC
TTTCGTATGTAGCCAATGGTTATCATCGAAAACGAACCGCTAGTAGTATG
ATACTGGTGAAAGGCTTGGGAATTGAAAACGTATTTCAAAGGTCAAACCA
ATCAGAATCCTTTATAAGTTGGGGCGTGAAAGATTATGGATTATGCGACG
TTGAAGTACAATTTTCATTTCCACGTACCAACATAACCACAAAGCTTGTA
TCGGCTTCGAACAAAACGTTTTCATATCGTGGCCCTCGAGCTGCAGAGGT
CCAGACTCGCTACCGTACTTTTGTTTACGTAAACTTATCACCTGGTGAAA
AAATTCGCATTAGTCAAAGCGGATGGAAAAATGTAACGATCATAAAAGAA
AAGATGACAACAACACAAAAACCGACTCCGACAACGACGACGAAGAATAG
ATGGGGTGACATTGACAATGAAGATTCTGATGATAAAGgaGAAGTGAGCA
TGTTTCTTTTGGTCGGTGATATCATTGGATTTGTGCTCCTCTTTATTTTG
TTGGGTATCTTGTGGAAGTTGGGAAAGGTTGTGCAGCGACACCACCACAA
GAGAAAAGGTTTCTTTACTTAAACTCGATCATCTCAAATTTACCTAGTTA
TAAATCAATGATGTGTCGTTCATTATGATGTAATAaacaacccagctggc
acacaacgttgtttcgacgtttatataacgtt Run BLAST on NCBI protein sequence of TCONS_00011113-protein >TCONS_00011113-protein ID=TCONS_00011113-protein|Name=TCONS_00011113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MITYIWLLLLSVFFFGLIDGADIKFTDSKSLVTVESGNNVTLMWNLYNIE
RRTTIALYFDNKKNEIGSLSISSITKNYTDWTLDTKPLATKIKDFKIVLS
EGNGTFGFVLEDLRYDDSSVLIVTNEDSSGIKAQHKLTINVEGGPHECGV
KSLPQNITCSHDQVITQKITLCGKPQPEVTWKIGDTEFNGTVGKTETDKH
QYIYTLKTKLTSDMCGRKLSYVANGYHRKRTASSMILVKGLGIENVFQRS
NQSESFISWGVKDYGLCDVEVQFSFPRTNITTKLVSASNKTFSYRGPRAA
EVQTRYRTFVYVNLSPGEKIRISQSGWKNVTIIKEKMTTTQKPTPTTTTK
NRWGDIDNEDSDDKGEVSMFLLVGDIIGFVLLFILLGILWKLGKVVQRHH
HKRKGFFT Run BLAST on NCBI transcript from alignment at sc0000121:554063..558776+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011113 ID=TCONS_00011113|Name=TCONS_00011113|organism=Clytia hemisphaerica|type=transcript|length=4714bp|location=Sequence derived from alignment at sc0000121:554063..558776+ (Clytia hemisphaerica)
ATTTTTTACCACTATCTTATTATATTTTCAGATgtagaaaaatgaaataa
tagaTAGAAAATAAAATCGACAACACACACGCACATACACCACACATACA
CCTGCACATACACCAGACATTCACAATCTCATTATTACATAGAAAATGAT
CACCTACATTTGGCTTCTCCTGTTATCggtcttcTTTTTTGGCCTTATTG
GTAGGTTTAAAATTCTTTGCATCCTCGCTTGTTTTTTCGACCAACTAAAG
TGGCTGATGATACGAAACAAATAATCTTTAAATCGAGTGTTGGGTTACCT
TAGCCCACAACCCGTATCCAGTGCCAAAATATATCTAAAAACAAAAGCTT
TTTAACTAAACTAAAAGTTATTAACATTTTGAAGGTTTACTGTGACTTTT
ACAATCGTTTCTATGATGAAGCCTAAATACATTGagaaaatttagaaaca
aaGACGGGATAGATGATAAATTAAGACCATTTCGATacacatttcttttt
ttataaaggaACCCCAATTTTCGGCTCTGACTGCAGTTGCTAAGGATTTT
ccgtttttttgccaaaaagttgCTTATGGGTTTTTTAGCCAAAAATGCAT
AAcaacttcaaattttttggctttttatcTCATCTTTCGTCCAAAATTTG
GTGTTCAAATACCATCAGTACACATTTTAATGCCAAATAATCCTGAAAAT
GCCTCTTTTCAAggtatttttggtatttttggtatttttggtTGCTTATC
AGCTTCATTCTCAGTTTCACGGCTAGGTTGCTAAGGCTAAGTTGCTTAAT
ATTTTTGGCTATTCTCAGGGCTGGACCCTTACCAACTCGGtcgcttataa
aaaaatgtactgTAACTTTCGAGTTCTGTaaactcatttttattttatga
gaacagttttataagaacataaggcttaatTTAGACAAAAATTTAGAACA
AAATAAGTACAATTACAGTCTCATATTTTCAAAGTTGCTTTGTCTTAGTT
TGAGACGAAACATTTTAAGTTACCAGGGACAACTTCTTTTTCCAATATTT
GTGTCAATGCAACTTTGGAATGATCCAGCCAAATATCGCACTATTCGAGT
TTAGCGCTAGTTTTATTGCGATaaatgcaaaaattttcaattctgcTAAC
AATTTAATggtcgaaagaaaaataaatcttttccAGTCGTCTGATTTCAC
GTAACGGTTTACATAAGTTgaagtaaaaaagtaaattgTCTAAAACTGCC
CGATTTCCAGGGCTCTTAAATGCGTGTAAAAATGGCTTCGAAATCCTTTT
TCACTTTGAGTAAACCTAAACGACAATAACGTGAAACCTCTTTTCCAGAT
GGAGCTGACATCAAGTTCACAGATTCAAAGAGCTTGGTCACTGTAGAATC
TGGCAATAATGTCACGTTAATGTGGAACTTGTATAACATTGAGAGGAGAA
CAACTATAGCTCTATACTTTGATAACAAAAAAAACGAGATAGGATCACTA
TCAATCTCATCGATCACAAAAAATTACACAGATTGGACACTTGATACAAA
ACCTTTGGCAACCAAGATAAAAGACTTCAAGATTGTGCTTAGTGAGGGAA
ATGGAACTTTCGGATTTGTTTTGGAAGATTTGAGATATGATGACAGTAGT
GTCTTAATTGTGACCAATGAAGACAGTAGTGGGATTAAAGCACAACACAA
GTTAACTATAAATGTTGAAGGTGGTCGACCTCTTTAATTTCTTTACTTAA
GTGCTGAAGTCCAAAGATACACCTTTTATCTCGAAACTTGAAAGAGTGGA
CACATTAGGTTAAATTCTATTCGCttcaaaaaatacactttttcgacaGG
CATTTTTAAACCAATGCTTCAATGTTAACAGATTATCTACGGTCGATAAA
AGTGACTAGGCCACTATGatttttgagaagaaaaaaattactggttattt
ttttggttttaagtATAAATTAAATGTTGAAGacgaaaaaacctgtttcg
gagatgaattaatttgaaaatttaaaacaaaaactacaTGTCGTTCCCTT
TCTTCGTCATCTCTTTGAATACTTACATTTCTACTCAGGTGGACCACATG
AGTGCGGAGTCAAATCATTACCACAAAACATCACTTGCTCACATGACCAA
GTCATTACACAAAAAATCACTCTCTGTGGAAAGCCTCAACCCGAAGTTAC
TTGGAAAATCGGGGACACAGAATTTAACGGGACAGTTGGTAAAACTGAAA
CAGATAAACATCAATACATATACACCTTGAAAACGAAACTGACGTCAGAC
ATGTGTGGAAGAAAACTTTCGTATGTAGCCAATGGTTATCATCGAAAACG
AACCGCTAGTAGTATGATACTGGTGAAAGGCTGTAAGTTTCATTTTCTTA
CAACATTTACATTCAATCCGTACCATACCTCTTTTGGTTTTATTTAAGAA
ATTTTGGGTCAGTTGGATCTTCCTTTGTTCAAGTAATTTTGCGCTATTTG
TCATTATCTAACATTTCAAACCCGGCCGTTATTTACACCACTTTTCATTA
TGTCCTCCCgcctggattcagggggggggggggggNNNNNNNNNNNNTAA
TTTTCCACCCCGGCCCGTTTTTTCCCCCCTTTTCATTTTGCTCCCCCgcc
tggattcagggggggggggtggatttTGGAGCGAAGATCAAGTATGGTTC
CTTTCAAACCTGTGAATTATCAGTAAAGAGcatcaaaaattacaattttt
taatcaaaatccaaaattgaagGCATTCTGAGGCCATTTGAATAgttttt
agacaattttttgtcaataaaattctTCATGCCCGTAATTTTTCTGAGCG
GGGGGACTCGAAAATTTTTTGGAGCCAGGGTTGGGAAAAATGAGGGGTGG
GGGGTGGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATTTTAGGtattgagggggggggggttggaaccTGAAAGACACTA
CACTGTGCTTTTAGTACCAAACACTTAGTTATAAAGGACTGAAATTATGC
ACTACTAGCGTTAAGATGTTAACTTTAGACTTAGTTCCTTAGCAATTTTA
ACGACTGAAGTTAAAGTCATTGCAATTTTTACTATTTATAAGCCTAAGTA
GCAGTTATTCTAGCGGCGCTAGCTCGCGTTAAGTCAATATTGGCCAGCAG
GTAATACGAGCCGACATTAAAGGTATCGTAGCTTTTTGAGATGACTTTAT
ACCTTCTAACCACCTTGCATTTGCTCTAATGAAATCATTTTGACTTGGCA
GTGGGAATTGAAAACGTATTTCAAAGGTCAAACCAATCAGAATCCTTTAT
AAGTTGGGGCGTGAAAGATTATGGATTATGCGACGTTGAAGTACAATTTT
CATTTCCACGTACCAACATAACCACAAAGCTTGTATCGGCTTCGAACAAA
ACGTTTTCATATCGTGGCCCTCGAGCTGCAGAGGTCCAGACTCGCTACCG
TACTTTTGTTTACGTAAACTTATCACCTGGTGAAAAAATTCGCATTAGTC
AAAGCGGATGGAAAAATGTAACGATCATAAAAGAAAAGATGACAACAACA
CAAAAACCGACTCCGACAACGACGACGAAGAATAGATGGGGTGACATTGA
CAATGAAGATTCTGATGATAAAGGTATACATAATTCTTCACTGTGAATTT
GCTTTATCTTACAGTAaaggcgtacggggtttgcaatttccgaaataccg
aataattttgttaaaatttccgagattctgtaaaaaaatacttgcaattc
cgataccgattgttttgggtattttccctcgttttgactaatttttcatc
aaatttgattattCATGTTTTAATTCcaaaaaagggggataaaaacttaa
taataccgaaattctgaagcaaaaattcataaatttccgATACTGAAACA
ATTTCAGCATTCCGAAAtaaccgaaggaattttgcccgatttccgaaatt
ccgaagaaaaaaggttCGATCTCtacaattccgaaataccgtacgccccc
agTAAGTTTGGTCAGATAATAAAAACACTCGAGGGCAAAGTTTTGTCGAT
TTTCCCTTATCTCTagtttgaagaatttttttaaatctttgttgcACTTT
AATATTTGAAAACTAACCCCTCAAAATCGGTCGAGGGGAGGGGGTCCTAA
TAGCGTTCGTCTTAGGTCTCAATTTCTTATTTCTTATCAGGGAAAGGTac
aaattgcttgaaatttggTCTCTTGGTAAATGTAGATTTGTTTTCTCTTT
ATTGAGATTGTCTTGAGAAACTCTCAAGTTTGATAATAATTCAAACATtt
caattcacttttttttcaaggaGAAGTGAGCATGTTTCTTTTGGTCGGTG
ATATCATTGGATTTGTGCTCCTCTTTATTTTGTTGGGTATCTTGTGGAAG
TTGGGAAAGGTTGTGCAGCGACACCACCACAAGAGAAAAGGTTTCTTTAC
TTAAACTCGATCATCTCAAATTTACCTAGTTATAAATCAATGATGTGTCG
TTCATTATGATGTAATAaacaacccagctggcacacaacgttgtttcgac
gtttatataacgtt Coding sequence (CDS) from alignment at sc0000121:554063..558776+ >TCONS_00011113 ID=TCONS_00011113|Name=TCONS_00011113|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at sc0000121:554063..558776+ (Clytia hemisphaerica)
ATGATCACCTACATTTGGCTTCTCCTGTTATCggtcttcTTTTTTGGCCT
TATTGATGGAGCTGACATCAAGTTCACAGATTCAAAGAGCTTGGTCACTG
TAGAATCTGGCAATAATGTCACGTTAATGTGGAACTTGTATAACATTGAG
AGGAGAACAACTATAGCTCTATACTTTGATAACAAAAAAAACGAGATAGG
ATCACTATCAATCTCATCGATCACAAAAAATTACACAGATTGGACACTTG
ATACAAAACCTTTGGCAACCAAGATAAAAGACTTCAAGATTGTGCTTAGT
GAGGGAAATGGAACTTTCGGATTTGTTTTGGAAGATTTGAGATATGATGA
CAGTAGTGTCTTAATTGTGACCAATGAAGACAGTAGTGGGATTAAAGCAC
AACACAAGTTAACTATAAATGTTGAAGGTGGACCACATGAGTGCGGAGTC
AAATCATTACCACAAAACATCACTTGCTCACATGACCAAGTCATTACACA
AAAAATCACTCTCTGTGGAAAGCCTCAACCCGAAGTTACTTGGAAAATCG
GGGACACAGAATTTAACGGGACAGTTGGTAAAACTGAAACAGATAAACAT
CAATACATATACACCTTGAAAACGAAACTGACGTCAGACATGTGTGGAAG
AAAACTTTCGTATGTAGCCAATGGTTATCATCGAAAACGAACCGCTAGTA
GTATGATACTGGTGAAAGGCTTGGGAATTGAAAACGTATTTCAAAGGTCA
AACCAATCAGAATCCTTTATAAGTTGGGGCGTGAAAGATTATGGATTATG
CGACGTTGAAGTACAATTTTCATTTCCACGTACCAACATAACCACAAAGC
TTGTATCGGCTTCGAACAAAACGTTTTCATATCGTGGCCCTCGAGCTGCA
GAGGTCCAGACTCGCTACCGTACTTTTGTTTACGTAAACTTATCACCTGG
TGAAAAAATTCGCATTAGTCAAAGCGGATGGAAAAATGTAACGATCATAA
AAGAAAAGATGACAACAACACAAAAACCGACTCCGACAACGACGACGAAG
AATAGATGGGGTGACATTGACAATGAAGATTCTGATGATAAAGgaGAAGT
GAGCATGTTTCTTTTGGTCGGTGATATCATTGGATTTGTGCTCCTCTTTA
TTTTGTTGGGTATCTTGTGGAAGTTGGGAAAGGTTGTGCAGCGACACCAC
CACAAGAGAAAAGGTTTCTTTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011113-exon-sc0000121-1491911889:554063..554262 | TCONS_00011113-exon-sc0000121-1491911889:554063..554262 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1510915933:554063..554262 | TCONS_00011113-exon-sc0000121-1510915933:554063..554262 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1575043694:554063..554262 | TCONS_00011113-exon-sc0000121-1575043694:554063..554262 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1491911889:555411..555782 | TCONS_00011113-exon-sc0000121-1491911889:555411..555782 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1510915933:555411..555782 | TCONS_00011113-exon-sc0000121-1510915933:555411..555782 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1575043694:555411..555782 | TCONS_00011113-exon-sc0000121-1575043694:555411..555782 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1491911889:556151..556444 | TCONS_00011113-exon-sc0000121-1491911889:556151..556444 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1510915933:556151..556444 | TCONS_00011113-exon-sc0000121-1510915933:556151..556444 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1575043694:556151..556444 | TCONS_00011113-exon-sc0000121-1575043694:556151..556444 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1491911889:557464..557835 | TCONS_00011113-exon-sc0000121-1491911889:557464..557835 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1510915933:557464..557835 | TCONS_00011113-exon-sc0000121-1510915933:557464..557835 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1575043694:557464..557835 | TCONS_00011113-exon-sc0000121-1575043694:557464..557835 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1491911889:558533..558776 | TCONS_00011113-exon-sc0000121-1491911889:558533..558776 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1510915933:558533..558776 | TCONS_00011113-exon-sc0000121-1510915933:558533..558776 | Clytia hemisphaerica | exon |
| TCONS_00011113-exon-sc0000121-1575043694:558533..558776 | TCONS_00011113-exon-sc0000121-1575043694:558533..558776 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:554063..558776 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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